Wall clock time and date at job start Sat Apr 11 2020 02:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45204 * 109.46942 * 2 1 4 4 C 1.34228 * 116.99629 * 179.97438 * 3 2 1 5 5 O 1.20832 * 120.00063 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00086 * 179.97438 * 4 3 2 7 7 N 1.46901 * 109.47547 * 179.97438 * 6 4 3 8 8 C 1.46900 * 110.99625 * 66.05009 * 7 6 4 9 9 C 1.50704 * 109.47226 * 199.84472 * 8 7 6 10 10 H 1.08000 * 119.99455 * 355.05820 * 9 8 7 11 11 C 1.37875 * 120.00191 * 175.06046 * 9 8 7 12 12 N 1.31516 * 119.99657 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00103 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46785 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46763 * 119.99875 * 13 11 9 16 16 H 1.48499 * 109.47097 * 240.00132 * 13 11 9 17 17 C 1.46899 * 111.00299 * 190.00171 * 7 6 4 18 18 C 1.53003 * 109.47069 * 75.68037 * 17 7 6 19 19 C 1.52998 * 109.47285 * 174.88041 * 18 17 7 20 20 C 1.50694 * 109.47261 * 180.02562 * 19 18 17 21 21 C 1.38388 * 119.92200 * 270.02375 * 20 19 18 22 22 C 1.38343 * 120.30133 * 180.02562 * 21 20 19 23 23 C 1.37969 * 120.15502 * 359.66993 * 22 21 20 24 24 C 1.39611 * 119.84067 * 0.60759 * 23 22 21 25 25 C 1.43201 * 120.14947 * 179.69228 * 24 23 22 26 26 N 9.28477 * 126.20803 * 279.15657 * 6 1 2 27 27 C 1.37923 * 119.92531 * 90.00171 * 20 19 18 28 28 H 1.09001 * 109.47215 * 300.00074 * 1 2 3 29 29 H 1.09001 * 109.46761 * 60.00286 * 1 2 3 30 30 H 1.08999 * 109.46923 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47477 * 239.99409 * 2 1 3 32 32 H 1.09001 * 109.46761 * 119.99714 * 2 1 3 33 33 H 1.09003 * 109.46910 * 60.00359 * 6 4 3 34 34 H 1.08998 * 109.47558 * 300.00550 * 6 4 3 35 35 H 1.09002 * 109.47402 * 319.84098 * 8 7 6 36 36 H 1.08999 * 109.47182 * 79.84246 * 8 7 6 37 37 H 0.97003 * 119.99916 * 179.97438 * 12 11 9 38 38 H 1.09003 * 109.47211 * 315.68302 * 17 7 6 39 39 H 1.08996 * 109.47045 * 195.68082 * 17 7 6 40 40 H 1.09000 * 109.46672 * 54.88348 * 18 17 7 41 41 H 1.08995 * 109.47191 * 294.88305 * 18 17 7 42 42 H 1.09003 * 109.47074 * 59.99976 * 19 18 17 43 43 H 1.09003 * 109.47177 * 300.00594 * 19 18 17 44 44 H 1.07994 * 119.84954 * 359.97438 * 21 20 19 45 45 H 1.07998 * 119.92116 * 180.02562 * 22 21 20 46 46 H 1.08001 * 120.08052 * 180.29607 * 23 22 21 47 47 H 1.07994 * 120.07700 * 0.04367 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 7 5.3878 2.8605 0.0014 8 6 5.8854 2.2761 -1.2511 9 6 7.2881 1.7653 -1.0447 10 1 7.7919 1.9357 -0.1047 11 6 7.9283 1.0806 -2.0558 12 7 7.3146 0.8728 -3.2002 13 14 9.6673 0.4482 -1.8001 14 1 10.1297 0.8093 -0.4359 15 1 9.6843 -1.0288 -1.9533 16 1 10.5700 1.0608 -2.8076 17 6 5.9840 4.1819 0.2391 18 6 5.8510 4.5424 1.7200 19 6 6.5830 5.8580 1.9924 20 6 6.4525 6.2128 3.4511 21 6 5.3868 6.9837 3.8814 22 6 5.2597 7.3145 5.2187 23 6 6.1922 6.8716 6.1340 24 6 7.2730 6.0984 5.7058 25 6 8.2483 5.6407 6.6491 26 7 9.0250 5.2718 7.3962 27 6 7.3952 5.7682 4.3544 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8900 33 1 3.5844 3.4700 0.8896 34 1 3.5852 3.4691 -0.8904 35 1 5.2386 1.4509 -1.5493 36 1 5.8869 3.0368 -2.0317 37 1 7.7651 0.3914 -3.9118 38 1 5.4666 4.9278 -0.3643 39 1 7.0384 4.1595 -0.0362 40 1 6.2891 3.7504 2.3275 41 1 4.7968 4.6539 1.9736 42 1 6.1450 6.6500 1.3849 43 1 7.6372 5.7466 1.7387 44 1 4.6516 7.3294 3.1700 45 1 4.4254 7.9161 5.5479 46 1 6.0892 7.1266 7.1784 47 1 8.2265 5.1669 4.0172 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208854708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:36:22 Heat of formation + Delta-G solvation = -36.583642 kcal Electronic energy + Delta-G solvation = -27017.182926 eV Core-core repulsion = 23165.024769 eV Total energy + Delta-G solvation = -3852.158157 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.99265 -39.81204 -37.32164 -36.62197 -35.80431 -34.15290 -32.50828 -31.63985 -31.52793 -30.41345 -28.32953 -26.62400 -24.65088 -24.08750 -23.02388 -22.34237 -21.31326 -20.98648 -19.73352 -18.42162 -17.23934 -16.60082 -16.55316 -16.15243 -15.97300 -15.77935 -14.78184 -14.73270 -14.52351 -14.26244 -14.13766 -13.90219 -13.59881 -13.44618 -13.26597 -13.12150 -12.92807 -12.73783 -12.70737 -12.22302 -12.07649 -11.97425 -11.81828 -11.62982 -11.49875 -11.41107 -11.20856 -11.15394 -10.89361 -10.64062 -10.51086 -10.22655 -10.15304 -9.94190 -9.55509 -9.21256 -9.16112 -8.95284 -8.34711 -7.39642 -5.95803 -3.94885 0.54153 1.06538 2.45035 2.72868 2.83679 2.99033 3.35336 3.42989 3.47618 3.61954 3.66060 4.44499 4.51457 4.59095 4.76016 4.84699 5.00361 5.02136 5.04363 5.08331 5.19766 5.24837 5.39620 5.40874 5.44301 5.48809 5.50994 5.66622 5.66794 5.81137 5.82756 5.84343 5.85080 5.93840 5.98288 6.02610 6.08000 6.16739 6.31578 6.54385 6.57865 6.65547 6.85678 7.18163 7.26298 7.27721 7.81870 8.10421 8.15345 8.37788 8.56082 9.10440 9.67529 11.15667 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.007213 B = 0.003256 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3880.708961 B = 8597.613636 C =11249.201839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.062 3.938 3 O -0.372 6.372 4 C 0.451 3.549 5 O -0.463 6.463 6 C 0.066 3.934 7 N -0.524 5.524 8 C 0.189 3.811 9 C -0.493 4.493 10 H 0.063 0.937 11 C 0.054 3.946 12 N -0.901 5.901 13 Si 0.896 3.104 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.286 1.286 17 C 0.065 3.935 18 C -0.110 4.110 19 C -0.084 4.084 20 C -0.071 4.071 21 C -0.088 4.088 22 C -0.120 4.120 23 C -0.080 4.080 24 C -0.029 4.029 25 C 0.256 3.744 26 N -0.422 5.422 27 C -0.066 4.066 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.045 0.955 36 H -0.013 1.013 37 H 0.259 0.741 38 H 0.025 0.975 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.797 12.707 11.662 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.291 6.291 4 C 0.291 3.709 5 O -0.345 6.345 6 C -0.064 4.064 7 N -0.249 5.249 8 C 0.064 3.936 9 C -0.531 4.531 10 H 0.081 0.919 11 C -0.146 4.146 12 N -0.541 5.541 13 Si 0.724 3.276 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.212 1.212 17 C -0.063 4.063 18 C -0.149 4.149 19 C -0.122 4.122 20 C -0.071 4.071 21 C -0.106 4.106 22 C -0.138 4.138 23 C -0.101 4.101 24 C -0.032 4.032 25 C -0.060 4.060 26 N -0.097 5.097 27 C -0.087 4.087 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.005 0.995 37 H 0.068 0.932 38 H 0.043 0.957 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.148 0.852 45 H 0.149 0.851 46 H 0.147 0.853 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.196 11.383 13.025 20.080 hybrid contribution 0.369 -0.035 -0.923 0.995 sum -9.826 11.348 12.102 19.282 Atomic orbital electron populations 1.21780 0.93160 1.02554 1.03162 1.22894 0.94754 0.81017 1.02571 1.86457 1.25600 1.31767 1.85243 1.23755 0.79952 0.93415 0.73826 1.90767 1.59555 1.42483 1.41745 1.21528 0.92232 0.89838 1.02755 1.61908 1.00517 1.21478 1.41025 1.19916 0.96889 0.93992 0.82780 1.21081 0.98058 1.34467 0.99539 0.91915 1.24948 0.98197 0.96229 0.95250 1.69965 1.37386 1.42223 1.04519 0.86478 0.84460 0.78631 0.78053 1.19684 1.21131 1.21241 1.22034 1.01427 0.88772 0.94101 1.21633 0.99756 0.95643 0.97822 1.20681 1.02549 0.98558 0.90392 1.19936 0.94148 0.96558 0.96460 1.21356 0.97013 0.96303 0.95959 1.21068 0.99171 1.00495 0.93037 1.21123 0.92785 0.96022 1.00157 1.15988 0.93742 1.02928 0.90577 1.25899 0.93247 0.93516 0.93291 1.81387 1.09832 1.08776 1.09691 1.21178 0.99167 0.97696 0.90642 0.91759 0.91658 0.90627 0.91361 0.91546 0.88151 0.91966 0.93679 0.99534 0.93151 0.95667 0.89224 0.90727 0.92509 0.90628 0.90215 0.85188 0.85077 0.85305 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.29 37.16 0.38 -1.05 16 2 C 0.06 0.84 6.19 37.16 0.23 1.07 16 3 O -0.37 -5.95 10.22 -39.25 -0.40 -6.35 16 4 C 0.45 8.55 7.47 36.00 0.27 8.82 16 5 O -0.46 -10.88 14.29 -18.75 -0.27 -11.15 16 6 C 0.07 1.11 5.39 -4.98 -0.03 1.08 16 7 N -0.52 -10.64 4.09 -237.51 -0.97 -11.61 16 8 C 0.19 4.85 4.23 -4.97 -0.02 4.83 16 9 C -0.49 -13.90 8.54 -34.44 -0.29 -14.19 16 10 H 0.06 1.75 7.77 -52.49 -0.41 1.35 16 11 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 12 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 13 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 C 0.06 1.05 4.80 -3.82 -0.02 1.03 16 18 C -0.11 -1.38 5.23 -26.73 -0.14 -1.52 16 19 C -0.08 -0.81 5.34 -27.89 -0.15 -0.96 16 20 C -0.07 -0.63 5.13 -104.68 -0.54 -1.17 16 21 C -0.09 -0.64 9.69 -39.49 -0.38 -1.02 16 22 C -0.12 -0.77 10.03 -39.64 -0.40 -1.17 16 23 C -0.08 -0.59 9.76 -39.17 -0.38 -0.97 16 24 C -0.03 -0.27 5.73 -106.93 -0.61 -0.88 16 25 C 0.26 2.91 15.34 -22.37 -0.34 2.56 16 26 N -0.42 -5.80 18.56 41.96 0.78 -5.02 16 27 C -0.07 -0.63 9.40 -39.17 -0.37 -1.00 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 32 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 33 H 0.10 1.35 6.71 -51.93 -0.35 1.00 16 34 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 35 H 0.05 1.30 5.86 -51.93 -0.30 0.99 16 36 H -0.01 -0.35 8.00 -51.93 -0.42 -0.76 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.03 0.37 8.00 -51.93 -0.42 -0.04 16 39 H 0.09 1.64 7.27 -51.93 -0.38 1.26 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.64 6.95 -51.93 -0.36 0.28 16 42 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 43 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 44 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 46 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 47 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 403.54 15.07 6.08 6.08 Total: -1.00 -34.66 403.54 -9.21 -43.86 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -7.25 Total: -3.39 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.89 Total: -3.05 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.54 Total: -43.09 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.67 Total: -17.50 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.66 -9.21 -43.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208854708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.280 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds