Wall clock time and date at job start Sat Apr 11 2020 02:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45204 * 109.46942 * 2 1 4 4 C 1.34228 * 116.99629 * 179.97438 * 3 2 1 5 5 O 1.20832 * 120.00063 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00086 * 179.97438 * 4 3 2 7 7 N 1.46901 * 109.47547 * 179.97438 * 6 4 3 8 8 C 1.46900 * 110.99625 * 66.05009 * 7 6 4 9 9 C 1.50704 * 109.47226 * 199.84472 * 8 7 6 10 10 H 1.08000 * 119.99455 * 355.05820 * 9 8 7 11 11 C 1.37875 * 120.00191 * 175.06046 * 9 8 7 12 12 N 1.31516 * 119.99657 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00103 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46785 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46763 * 119.99875 * 13 11 9 16 16 H 1.48499 * 109.47097 * 240.00132 * 13 11 9 17 17 C 1.46899 * 111.00299 * 190.00171 * 7 6 4 18 18 C 1.53003 * 109.47069 * 75.68037 * 17 7 6 19 19 C 1.52998 * 109.47285 * 174.88041 * 18 17 7 20 20 C 1.50694 * 109.47261 * 180.02562 * 19 18 17 21 21 C 1.38388 * 119.92200 * 270.02375 * 20 19 18 22 22 C 1.38343 * 120.30133 * 180.02562 * 21 20 19 23 23 C 1.37969 * 120.15502 * 359.66993 * 22 21 20 24 24 C 1.39611 * 119.84067 * 0.60759 * 23 22 21 25 25 C 1.43201 * 120.14947 * 179.69228 * 24 23 22 26 26 N 9.28477 * 126.20803 * 279.15657 * 6 1 2 27 27 C 1.37923 * 119.92531 * 90.00171 * 20 19 18 28 28 H 1.09001 * 109.47215 * 300.00074 * 1 2 3 29 29 H 1.09001 * 109.46761 * 60.00286 * 1 2 3 30 30 H 1.08999 * 109.46923 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47477 * 239.99409 * 2 1 3 32 32 H 1.09001 * 109.46761 * 119.99714 * 2 1 3 33 33 H 1.09003 * 109.46910 * 60.00359 * 6 4 3 34 34 H 1.08998 * 109.47558 * 300.00550 * 6 4 3 35 35 H 1.09002 * 109.47402 * 319.84098 * 8 7 6 36 36 H 1.08999 * 109.47182 * 79.84246 * 8 7 6 37 37 H 0.97003 * 119.99916 * 179.97438 * 12 11 9 38 38 H 1.09003 * 109.47211 * 315.68302 * 17 7 6 39 39 H 1.08996 * 109.47045 * 195.68082 * 17 7 6 40 40 H 1.09000 * 109.46672 * 54.88348 * 18 17 7 41 41 H 1.08995 * 109.47191 * 294.88305 * 18 17 7 42 42 H 1.09003 * 109.47074 * 59.99976 * 19 18 17 43 43 H 1.09003 * 109.47177 * 300.00594 * 19 18 17 44 44 H 1.07994 * 119.84954 * 359.97438 * 21 20 19 45 45 H 1.07998 * 119.92116 * 180.02562 * 22 21 20 46 46 H 1.08001 * 120.08052 * 180.29607 * 23 22 21 47 47 H 1.07994 * 120.07700 * 0.04367 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 7 5.3878 2.8605 0.0014 8 6 5.8854 2.2761 -1.2511 9 6 7.2881 1.7653 -1.0447 10 1 7.7919 1.9357 -0.1047 11 6 7.9283 1.0806 -2.0558 12 7 7.3146 0.8728 -3.2002 13 14 9.6673 0.4482 -1.8001 14 1 10.1297 0.8093 -0.4359 15 1 9.6843 -1.0288 -1.9533 16 1 10.5700 1.0608 -2.8076 17 6 5.9840 4.1819 0.2391 18 6 5.8510 4.5424 1.7200 19 6 6.5830 5.8580 1.9924 20 6 6.4525 6.2128 3.4511 21 6 5.3868 6.9837 3.8814 22 6 5.2597 7.3145 5.2187 23 6 6.1922 6.8716 6.1340 24 6 7.2730 6.0984 5.7058 25 6 8.2483 5.6407 6.6491 26 7 9.0250 5.2718 7.3962 27 6 7.3952 5.7682 4.3544 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8900 33 1 3.5844 3.4700 0.8896 34 1 3.5852 3.4691 -0.8904 35 1 5.2386 1.4509 -1.5493 36 1 5.8869 3.0368 -2.0317 37 1 7.7651 0.3914 -3.9118 38 1 5.4666 4.9278 -0.3643 39 1 7.0384 4.1595 -0.0362 40 1 6.2891 3.7504 2.3275 41 1 4.7968 4.6539 1.9736 42 1 6.1450 6.6500 1.3849 43 1 7.6372 5.7466 1.7387 44 1 4.6516 7.3294 3.1700 45 1 4.4254 7.9161 5.5479 46 1 6.0892 7.1266 7.1784 47 1 8.2265 5.1669 4.0172 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208854708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:36:21 Heat of formation + Delta-G solvation = -56.449481 kcal Electronic energy + Delta-G solvation = -27018.044373 eV Core-core repulsion = 23165.024769 eV Total energy + Delta-G solvation = -3853.019605 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.44157 -40.47462 -38.72849 -37.59016 -37.22460 -35.28085 -34.47673 -32.67526 -32.16229 -31.37357 -30.06344 -27.98751 -26.06344 -24.78709 -24.25689 -23.55416 -22.53767 -22.00968 -21.17549 -19.18958 -18.66635 -18.57325 -17.59337 -17.35573 -17.10863 -16.63430 -16.60190 -15.94836 -15.60890 -15.45974 -15.11789 -14.95705 -14.90090 -14.61373 -14.17123 -14.13238 -14.03048 -13.84738 -13.70639 -13.55222 -13.50348 -13.22170 -12.89266 -12.74204 -12.69191 -12.56864 -12.45385 -12.42455 -12.35283 -12.08449 -11.94762 -11.69891 -11.47112 -11.38608 -11.19036 -11.09346 -10.54337 -9.83288 -9.61621 -9.01592 -8.16478 -6.23064 -0.11982 0.46755 1.35133 1.37564 1.39924 1.52121 1.56972 1.70371 1.95443 2.41198 2.87528 2.94965 3.15882 3.31441 3.85723 3.89179 4.01263 4.02035 4.14896 4.16567 4.23051 4.35249 4.36365 4.39014 4.41846 4.55227 4.58642 4.63927 4.73818 4.88629 4.91981 4.95633 4.99230 5.04059 5.15542 5.17595 5.18608 5.29599 5.41014 5.43060 5.50107 5.53620 5.57733 5.68836 5.74473 6.00393 6.11212 6.42239 6.42795 6.55178 6.90143 6.98002 7.44154 8.94934 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.007213 B = 0.003256 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3880.708961 B = 8597.613636 C =11249.201839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.052 3.948 3 O -0.362 6.362 4 C 0.451 3.549 5 O -0.519 6.519 6 C 0.065 3.935 7 N -0.540 5.540 8 C 0.207 3.793 9 C -0.505 4.505 10 H 0.058 0.942 11 C -0.001 4.001 12 N -0.937 5.937 13 Si 0.962 3.038 14 H -0.265 1.265 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.065 3.935 18 C -0.097 4.097 19 C -0.076 4.076 20 C -0.082 4.082 21 C -0.079 4.079 22 C -0.113 4.113 23 C -0.073 4.073 24 C -0.047 4.047 25 C 0.277 3.723 26 N -0.474 5.474 27 C -0.079 4.079 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.146 0.854 34 H 0.079 0.921 35 H 0.009 0.991 36 H -0.033 1.033 37 H 0.261 0.739 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.156 0.844 45 H 0.164 0.836 46 H 0.148 0.852 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.966 14.940 12.875 24.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.022 4.022 3 O -0.279 6.279 4 C 0.294 3.706 5 O -0.406 6.406 6 C -0.063 4.063 7 N -0.266 5.266 8 C 0.081 3.919 9 C -0.544 4.544 10 H 0.076 0.924 11 C -0.198 4.198 12 N -0.579 5.579 13 Si 0.787 3.213 14 H -0.189 1.189 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.062 4.062 18 C -0.135 4.135 19 C -0.114 4.114 20 C -0.082 4.082 21 C -0.097 4.097 22 C -0.131 4.131 23 C -0.093 4.093 24 C -0.051 4.051 25 C -0.037 4.037 26 N -0.150 5.150 27 C -0.099 4.099 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.164 0.836 34 H 0.097 0.903 35 H 0.027 0.973 36 H -0.016 1.016 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.087 0.913 44 H 0.173 0.827 45 H 0.182 0.818 46 H 0.165 0.835 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.392 13.652 14.257 23.306 hybrid contribution 0.893 -0.693 -1.307 1.727 sum -11.499 12.959 12.950 21.631 Atomic orbital electron populations 1.21789 0.89478 1.04340 1.03977 1.23219 0.97556 0.79731 1.01716 1.86459 1.23866 1.33212 1.84412 1.24267 0.80501 0.93694 0.72153 1.90748 1.60979 1.44285 1.44604 1.21722 0.89904 0.89160 1.05529 1.61733 1.03021 1.23994 1.37820 1.19449 0.95281 0.92466 0.84694 1.21424 0.99443 1.34290 0.99218 0.92403 1.25820 1.02402 0.96546 0.94992 1.70087 1.39180 1.43188 1.05400 0.85450 0.79649 0.77748 0.78464 1.18921 1.21158 1.19945 1.22096 0.99656 0.87294 0.97192 1.21492 1.01381 0.96408 0.94214 1.20571 1.01727 0.97530 0.91566 1.19859 0.94997 0.97783 0.95572 1.21686 0.96343 0.94748 0.96943 1.21442 0.99425 0.99846 0.92375 1.21425 0.91786 0.94602 1.01520 1.16082 0.94422 1.04599 0.89995 1.26288 0.92615 0.92192 0.92586 1.81392 1.11475 1.10755 1.11428 1.21180 0.99496 0.98146 0.91104 0.90483 0.91224 0.88367 0.93063 0.91786 0.83644 0.90307 0.97261 1.01588 0.93012 0.93480 0.92146 0.93140 0.90205 0.88427 0.91320 0.82652 0.81812 0.83452 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 10.29 71.98 0.74 -1.62 16 2 C 0.05 1.39 6.19 71.98 0.45 1.83 16 3 O -0.36 -11.28 10.22 -51.39 -0.53 -11.80 16 4 C 0.45 17.20 7.47 71.23 0.53 17.73 16 5 O -0.52 -25.40 14.29 21.95 0.31 -25.09 16 6 C 0.07 2.12 5.39 85.56 0.46 2.58 16 7 N -0.54 -22.10 4.09 -905.35 -3.70 -25.80 16 8 C 0.21 11.08 4.23 85.56 0.36 11.44 16 9 C -0.51 -29.50 8.54 25.60 0.22 -29.28 16 10 H 0.06 3.34 7.77 -2.91 -0.02 3.32 16 11 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 12 N -0.94 -58.35 13.29 21.45 0.28 -58.06 16 13 Si 0.96 46.37 29.54 68.60 2.03 48.40 16 14 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 15 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 16 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 17 C 0.06 2.06 4.80 86.30 0.41 2.48 16 18 C -0.10 -2.25 5.23 30.59 0.16 -2.09 16 19 C -0.08 -1.31 5.34 29.85 0.16 -1.15 16 20 C -0.08 -1.26 5.13 -19.91 -0.10 -1.37 16 21 C -0.08 -0.81 9.69 22.33 0.22 -0.59 16 22 C -0.11 -0.95 10.03 22.23 0.22 -0.73 16 23 C -0.07 -0.85 9.76 22.54 0.22 -0.63 16 24 C -0.05 -0.83 5.73 -21.36 -0.12 -0.95 16 25 C 0.28 6.32 15.34 88.30 1.35 7.68 16 26 N -0.47 -13.40 18.56 19.04 0.35 -13.05 16 27 C -0.08 -1.44 9.40 22.54 0.21 -1.22 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.54 8.13 -2.39 -0.02 1.52 16 32 H 0.06 1.74 8.13 -2.39 -0.02 1.72 16 33 H 0.15 3.37 6.71 -2.39 -0.02 3.35 16 34 H 0.08 2.34 8.12 -2.39 -0.02 2.33 16 35 H 0.01 0.56 5.86 -2.39 -0.01 0.55 16 36 H -0.03 -1.87 8.00 -2.39 -0.02 -1.89 16 37 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 38 H 0.05 1.29 8.00 -2.39 -0.02 1.27 16 39 H 0.06 2.27 7.27 -2.39 -0.02 2.25 16 40 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 1.48 6.95 -2.39 -0.02 1.47 16 42 H 0.10 1.27 8.09 -2.39 -0.02 1.25 16 43 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 44 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 45 H 0.16 0.37 8.06 -2.91 -0.02 0.34 16 46 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 47 H 0.12 2.42 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -80.51 403.54 5.66 -74.84 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 0.96 Total: 6.03 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 5.96 Total: 4.54 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -3.07 Total: -96.91 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -0.21 Total: -36.89 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -80.51 5.66 -74.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208854708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.393 kcal (2) G-P(sol) polarization free energy of solvation -80.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds