Wall clock time and date at job start Sat Apr 11 2020 02:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45193 * 109.47654 * 2 1 4 4 C 1.34225 * 117.00468 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99856 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00343 * 180.27636 * 4 3 2 7 7 C 1.50698 * 109.47147 * 179.72661 * 6 4 3 8 8 C 1.38235 * 120.00129 * 269.72689 * 7 6 4 9 9 C 1.38241 * 119.99702 * 179.76746 * 8 7 6 10 10 C 1.38240 * 119.99907 * 0.48655 * 9 8 7 11 11 C 1.50698 * 119.99610 * 179.76744 * 10 9 8 12 12 N 1.46896 * 109.47474 * 270.02114 * 11 10 9 13 13 C 1.46896 * 111.00194 * 190.00235 * 12 11 10 14 14 C 1.50701 * 109.47222 * 170.09014 * 13 12 11 15 15 H 1.07999 * 119.99655 * 355.09459 * 14 13 12 16 16 C 1.37877 * 120.00108 * 175.09055 * 14 13 12 17 17 N 1.31514 * 120.00020 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99842 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47284 * 60.00249 * 18 16 14 20 20 H 1.48497 * 109.47121 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47184 * 300.00288 * 18 16 14 22 22 C 1.46902 * 110.99562 * 66.04606 * 12 11 10 23 23 C 1.53005 * 109.47017 * 63.38845 * 22 12 11 24 24 C 1.47203 * 109.47165 * 181.12346 * 23 22 12 25 25 N 9.99960 * 150.79425 * 286.01110 * 3 1 2 26 26 C 1.38235 * 120.00122 * 359.78924 * 10 9 8 27 27 C 1.38231 * 119.99840 * 359.95915 * 26 10 9 28 28 H 1.09000 * 109.47590 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46856 * 299.99650 * 1 2 3 30 30 H 1.09000 * 109.46933 * 59.99689 * 1 2 3 31 31 H 1.09010 * 109.46867 * 240.00259 * 2 1 3 32 32 H 1.08996 * 109.47266 * 120.00993 * 2 1 3 33 33 H 1.08995 * 109.47361 * 299.72970 * 6 4 3 34 34 H 1.09008 * 109.46772 * 59.72922 * 6 4 3 35 35 H 1.07998 * 120.00234 * 359.97438 * 8 7 6 36 36 H 1.07997 * 119.99910 * 180.26022 * 9 8 7 37 37 H 1.09003 * 109.47143 * 30.02932 * 11 10 9 38 38 H 1.09007 * 109.46720 * 150.01939 * 11 10 9 39 39 H 1.09004 * 109.46884 * 290.08573 * 13 12 11 40 40 H 1.09000 * 109.47435 * 50.08915 * 13 12 11 41 41 H 0.96995 * 119.99899 * 179.97438 * 17 16 14 42 42 H 1.09005 * 109.46773 * 183.38282 * 22 12 11 43 43 H 1.08995 * 109.47742 * 303.38539 * 22 12 11 44 44 H 1.08992 * 109.46823 * 301.12304 * 23 22 12 45 45 H 1.09002 * 109.47134 * 61.12718 * 23 22 12 46 46 H 1.07996 * 119.99840 * 179.97438 * 26 10 9 47 47 H 1.08000 * 119.99830 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0142 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5864 0.0005 6 6 3.9209 2.9372 0.0069 7 6 5.4258 2.8582 0.0130 8 6 6.1113 2.8243 1.2129 9 6 7.4916 2.7470 1.2184 10 6 8.1867 2.7137 0.0240 11 6 9.6916 2.6347 0.0301 12 7 10.2533 3.9921 0.0363 13 6 11.7035 3.9629 -0.1959 14 6 12.2039 5.3658 -0.4250 15 1 11.5041 6.1865 -0.4794 16 6 13.5552 5.6014 -0.5649 17 7 14.4073 4.6019 -0.4991 18 14 14.1754 7.3403 -0.8495 19 1 13.7776 8.2011 0.2934 20 1 15.6556 7.3250 -0.9665 21 1 13.5858 7.8773 -2.1023 22 6 9.9347 4.6878 1.2903 23 6 10.5926 3.9551 2.4613 24 6 10.2513 4.6366 3.7207 25 7 9.9896 5.1619 4.6900 26 6 7.5015 2.7534 -1.1759 27 6 6.1211 2.8255 -1.1814 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 3.5888 3.4719 -0.8829 34 1 3.5813 3.4668 0.8970 35 1 5.5685 2.8549 2.1460 36 1 8.0269 2.7163 2.1558 37 1 10.0238 2.0999 0.9199 38 1 10.0312 2.1050 -0.8601 39 1 12.2023 3.5368 0.6746 40 1 11.9188 3.3526 -1.0730 41 1 15.3579 4.7676 -0.5979 42 1 10.3104 5.7100 1.2442 43 1 8.8542 4.7038 1.4327 44 1 10.2321 2.9270 2.4953 45 1 11.6746 3.9566 2.3291 46 1 8.0446 2.7278 -2.1090 47 1 5.5857 2.8568 -2.1189 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237478486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:36:56 Heat of formation + Delta-G solvation = -37.287598 kcal Electronic energy + Delta-G solvation = -27142.364313 eV Core-core repulsion = 23290.175629 eV Total energy + Delta-G solvation = -3852.188683 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.78800 -39.47659 -37.68518 -36.79319 -35.97146 -33.47347 -32.57593 -32.02532 -30.91149 -30.40761 -29.03016 -26.69184 -25.06502 -23.82669 -23.17529 -22.58838 -21.65083 -20.56698 -19.70341 -17.96447 -17.46172 -16.98176 -16.66419 -16.35553 -15.72512 -15.56586 -15.22464 -15.06776 -14.51453 -14.46619 -14.13457 -13.78822 -13.68258 -13.50925 -13.27161 -13.25950 -12.84108 -12.66898 -12.34600 -12.19105 -12.14113 -12.05330 -11.95767 -11.92717 -11.61326 -11.27918 -11.19822 -11.04451 -10.86084 -10.80662 -10.70800 -10.68105 -10.54756 -10.22749 -9.90850 -9.32626 -8.73141 -8.53352 -8.44262 -7.38943 -6.09514 -4.11165 1.33618 1.58102 2.00596 2.48150 3.10478 3.13267 3.31045 3.35684 3.38573 3.86949 4.34143 4.40194 4.41555 4.53429 4.56721 4.68323 4.72362 4.88229 4.98971 5.06901 5.11185 5.18323 5.24176 5.26802 5.31499 5.36695 5.43205 5.53013 5.56167 5.61939 5.70105 5.79489 5.90209 5.99327 6.15073 6.21946 6.24628 6.29905 6.52267 6.59766 6.61746 6.86354 7.12950 7.15421 7.20957 7.54455 7.71331 7.85600 7.97122 8.04898 8.41420 8.96608 9.54018 11.00591 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018975 B = 0.002282 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.281027 B =12266.051025 C =13033.631698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.363 6.363 4 C 0.460 3.540 5 O -0.495 6.495 6 C -0.068 4.068 7 C -0.092 4.092 8 C -0.104 4.104 9 C -0.115 4.115 10 C -0.054 4.054 11 C 0.080 3.920 12 N -0.520 5.520 13 C 0.186 3.814 14 C -0.510 4.510 15 H 0.064 0.936 16 C 0.058 3.942 17 N -0.897 5.897 18 Si 0.895 3.105 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.070 3.930 23 C -0.076 4.076 24 C 0.225 3.775 25 N -0.461 5.461 26 C -0.097 4.097 27 C -0.103 4.103 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.040 0.960 38 H 0.082 0.918 39 H 0.005 0.995 40 H 0.031 0.969 41 H 0.262 0.738 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.098 0.902 45 H 0.124 0.876 46 H 0.126 0.874 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.531 -8.294 -0.126 24.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.281 6.281 4 C 0.302 3.698 5 O -0.381 6.381 6 C -0.106 4.106 7 C -0.093 4.093 8 C -0.122 4.122 9 C -0.134 4.134 10 C -0.055 4.055 11 C -0.048 4.048 12 N -0.243 5.243 13 C 0.061 3.939 14 C -0.549 4.549 15 H 0.082 0.918 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.723 3.277 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.061 4.061 23 C -0.118 4.118 24 C -0.092 4.092 25 N -0.139 5.139 26 C -0.115 4.115 27 C -0.121 4.121 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.023 0.977 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.110 0.890 43 H 0.085 0.915 44 H 0.116 0.884 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -23.710 -7.622 0.894 24.921 hybrid contribution 1.018 0.038 0.117 1.026 sum -22.692 -7.584 1.011 23.947 Atomic orbital electron populations 1.21809 0.92630 1.02988 1.03525 1.23015 0.95310 0.80281 1.02662 1.86500 1.24805 1.32404 1.84343 1.23785 0.80343 0.92933 0.72752 1.90711 1.60270 1.42995 1.44154 1.20285 0.92821 0.91008 1.06470 1.19094 0.92364 1.03731 0.94087 1.20847 0.94403 1.00148 0.96809 1.21017 0.93810 1.00751 0.97809 1.19970 0.95898 0.96784 0.92832 1.21172 0.89617 0.92424 1.01569 1.62423 1.17488 1.13555 1.30795 1.19884 0.79512 0.98101 0.96370 1.21085 0.91538 0.93115 1.49121 0.91790 1.24953 0.96883 0.97103 0.95426 1.69925 1.02583 1.30790 1.50288 0.86604 0.77501 0.84694 0.78903 1.20277 1.21416 1.20147 1.22105 0.98879 0.99651 0.85430 1.20274 1.05798 0.99168 0.86576 1.29166 0.92494 0.93295 0.94289 1.81017 1.10223 1.10119 1.12527 1.21005 0.93486 0.98921 0.98119 1.20907 0.94475 0.99897 0.96825 0.90249 0.91470 0.91455 0.91224 0.91255 0.86882 0.86958 0.86654 0.86325 0.94167 0.89997 0.97709 0.95120 0.92799 0.89044 0.91476 0.88383 0.85865 0.85623 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.29 37.16 0.38 -0.36 16 2 C 0.06 0.46 6.19 37.16 0.23 0.69 16 3 O -0.36 -3.38 10.22 -39.24 -0.40 -3.78 16 4 C 0.46 4.87 7.95 36.00 0.29 5.16 16 5 O -0.50 -6.92 15.78 -18.75 -0.30 -7.21 16 6 C -0.07 -0.58 5.94 -29.04 -0.17 -0.75 16 7 C -0.09 -1.06 4.37 -104.62 -0.46 -1.51 16 8 C -0.10 -1.25 9.70 -39.58 -0.38 -1.64 16 9 C -0.12 -1.50 7.91 -39.58 -0.31 -1.81 16 10 C -0.05 -0.76 4.89 -104.62 -0.51 -1.27 16 11 C 0.08 1.22 4.93 -4.98 -0.02 1.19 16 12 N -0.52 -9.49 4.69 -237.51 -1.11 -10.61 16 13 C 0.19 4.18 4.49 -4.98 -0.02 4.16 16 14 C -0.51 -13.00 8.41 -34.44 -0.29 -13.29 16 15 H 0.06 1.64 7.29 -52.49 -0.38 1.25 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -24.86 13.29 55.43 0.74 -24.13 16 18 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C 0.07 1.15 4.75 -3.82 -0.02 1.14 16 23 C -0.08 -1.14 4.95 -29.51 -0.15 -1.29 16 24 C 0.23 3.63 15.42 -20.85 -0.32 3.31 16 25 N -0.46 -8.33 18.52 42.05 0.78 -7.56 16 26 C -0.10 -1.30 9.70 -39.58 -0.38 -1.69 16 27 C -0.10 -1.24 9.70 -39.58 -0.38 -1.62 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 33 H 0.11 0.72 8.08 -51.93 -0.42 0.30 16 34 H 0.11 0.73 8.08 -51.92 -0.42 0.31 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.12 1.43 7.31 -52.49 -0.38 1.04 16 37 H 0.04 0.57 6.03 -51.93 -0.31 0.25 16 38 H 0.08 1.26 7.88 -51.92 -0.41 0.85 16 39 H 0.01 0.12 6.04 -51.93 -0.31 -0.19 16 40 H 0.03 0.75 7.93 -51.93 -0.41 0.34 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.09 1.71 6.94 -51.93 -0.36 1.35 16 43 H 0.07 1.02 5.93 -51.93 -0.31 0.71 16 44 H 0.10 1.24 5.72 -51.93 -0.30 0.94 16 45 H 0.12 2.07 6.35 -51.93 -0.33 1.74 16 46 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 47 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 395.17 15.07 5.96 5.96 Total: -1.00 -31.03 395.17 -8.86 -39.89 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -6.86 Total: -0.15 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.63 Total: -8.15 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.40 Total: -42.29 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.70 Total: -10.99 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.03 -8.86 -39.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237478486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.599 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds