Wall clock time and date at job start Sat Apr 11 2020 02:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00278 * 7 6 5 9 9 C 1.52996 * 109.47210 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47094 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99990 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99575 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99588 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47129 * 90.00082 * 13 12 10 15 15 H 1.08004 * 120.00054 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00029 * 179.97438 * 14 13 12 17 17 N 1.31507 * 119.99774 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99836 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47286 * 60.00200 * 18 16 14 20 20 H 1.48504 * 109.46822 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47430 * 300.00019 * 18 16 14 22 22 C 1.46492 * 120.00506 * 0.02562 * 12 10 9 23 23 C 1.52999 * 109.47041 * 89.99630 * 22 12 10 24 24 C 1.47209 * 109.47000 * 180.02562 * 23 22 12 25 25 N 9.05382 * 150.28144 * 184.83374 * 5 1 2 26 26 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 27 27 C 1.38143 * 120.05579 * 359.44512 * 26 6 5 28 28 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 30 30 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 31 31 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 34 34 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 35 35 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 36 36 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 37 37 H 1.08997 * 109.47037 * 300.00424 * 9 8 7 38 38 H 1.09000 * 109.46839 * 60.00324 * 9 8 7 39 39 H 1.08995 * 109.46831 * 210.00061 * 13 12 10 40 40 H 1.09004 * 109.47224 * 330.00339 * 13 12 10 41 41 H 0.96999 * 119.99994 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.47284 * 209.99876 * 22 12 10 43 43 H 1.09004 * 109.47048 * 329.99889 * 22 12 10 44 44 H 1.08993 * 109.47553 * 300.00164 * 23 22 12 45 45 H 1.08996 * 109.47279 * 60.00389 * 23 22 12 46 46 H 1.08001 * 119.97259 * 179.69844 * 26 6 5 47 47 H 1.07992 * 120.02912 * 180.24892 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2167 5.4747 -1.4393 9 6 4.9107 6.8382 -1.4382 10 6 5.1387 7.2871 -2.8586 11 8 4.7808 6.5857 -3.7811 12 7 5.7402 8.4680 -3.1038 13 6 5.9613 8.9046 -4.4847 14 6 4.7712 9.6995 -4.9568 15 1 3.9337 9.8627 -4.2947 16 6 4.7515 10.2183 -6.2342 17 7 5.7711 10.0191 -7.0405 18 14 3.2760 11.2030 -6.8196 19 1 3.0959 12.3910 -5.9470 20 1 3.5007 11.6467 -8.2189 21 1 2.0588 10.3546 -6.7582 22 6 6.1730 9.3149 -1.9897 23 6 7.6089 8.9547 -1.6031 24 6 8.0436 9.8054 -0.4831 25 7 8.3787 10.4633 0.3782 26 6 1.9209 3.6048 0.0081 27 6 1.2914 2.3752 0.0014 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 4.0208 0.3801 -0.0005 32 1 5.1344 2.5752 -0.0008 33 1 3.3580 5.7459 0.5176 34 1 4.9441 4.9378 0.5160 35 1 4.8445 4.7475 -1.9543 36 1 3.2585 5.5555 -1.9527 37 1 4.2826 7.5651 -0.9233 38 1 5.8689 6.7577 -0.9248 39 1 6.8550 9.5268 -4.5303 40 1 6.0927 8.0323 -5.1250 41 1 5.7574 10.3844 -7.9390 42 1 6.1295 10.3617 -2.2907 43 1 5.5157 9.1550 -1.1350 44 1 7.6525 7.9081 -1.3021 45 1 8.2663 9.1147 -2.4576 46 1 1.3340 4.5114 0.0143 47 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061427607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:36:25 Heat of formation + Delta-G solvation = -38.933632 kcal Electronic energy + Delta-G solvation = -26729.656438 eV Core-core repulsion = 22877.396377 eV Total energy + Delta-G solvation = -3852.260060 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.33558 -39.32409 -37.98941 -36.88492 -35.30608 -34.45835 -32.87327 -31.29182 -30.85544 -30.71247 -28.22191 -27.39995 -25.99635 -23.99876 -23.31166 -22.80608 -21.76090 -20.75159 -18.46373 -18.34328 -17.58892 -16.55303 -16.47275 -16.39819 -15.98615 -15.77676 -15.31715 -15.22798 -14.70087 -14.51612 -14.25019 -14.06210 -13.84648 -13.63721 -13.37052 -13.21945 -12.88379 -12.49133 -12.44065 -12.40488 -12.33160 -12.16055 -11.85119 -11.67434 -11.54202 -11.29896 -11.10189 -11.03475 -10.97645 -10.95595 -10.84446 -10.58480 -10.51084 -10.18746 -9.71733 -9.15793 -8.96179 -8.46648 -8.22411 -7.82135 -6.08280 -4.12835 1.18492 1.26145 2.74582 2.82623 3.03509 3.29939 3.33475 3.34924 3.40214 3.56690 3.70143 4.22300 4.41958 4.56841 4.66936 4.72878 4.80270 4.84125 4.97433 5.03874 5.06032 5.14283 5.16243 5.21016 5.25097 5.27199 5.33397 5.39924 5.49992 5.61026 5.66372 5.73548 5.75909 5.87287 5.87682 6.09683 6.12753 6.20262 6.22230 6.46987 6.55421 6.60661 6.96401 7.17515 7.37991 7.45055 7.58071 7.87817 8.18521 8.29966 8.85562 9.02253 9.52600 10.99832 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010095 B = 0.002486 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.907907 B =11259.006396 C =13348.290801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.117 3.883 4 C -0.150 4.150 5 C -0.077 4.077 6 C -0.111 4.111 7 C -0.078 4.078 8 C -0.098 4.098 9 C -0.144 4.144 10 C 0.505 3.495 11 O -0.533 6.533 12 N -0.600 5.600 13 C 0.244 3.756 14 C -0.528 4.528 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.119 3.881 23 C -0.051 4.051 24 C 0.218 3.782 25 N -0.447 5.447 26 C -0.077 4.077 27 C -0.206 4.206 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.034 0.966 40 H 0.046 0.954 41 H 0.264 0.736 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.107 0.893 45 H 0.116 0.884 46 H 0.125 0.875 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.033 -14.679 16.606 22.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.072 3.928 4 C -0.168 4.168 5 C -0.095 4.095 6 C -0.111 4.111 7 C -0.115 4.115 8 C -0.136 4.136 9 C -0.184 4.184 10 C 0.292 3.708 11 O -0.410 6.410 12 N -0.331 5.331 13 C 0.125 3.875 14 C -0.567 4.567 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.008 4.008 23 C -0.092 4.092 24 C -0.100 4.100 25 N -0.124 5.124 26 C -0.095 4.095 27 C -0.224 4.224 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.111 0.889 43 H 0.094 0.906 44 H 0.125 0.875 45 H 0.134 0.866 46 H 0.143 0.857 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.576 -14.219 17.171 22.759 hybrid contribution -1.196 0.562 -0.788 1.539 sum -5.771 -13.657 16.383 22.096 Atomic orbital electron populations 1.23035 0.78506 1.03807 1.01389 1.86055 1.21308 1.27139 1.88931 1.19037 0.92427 0.84069 0.97290 1.20414 0.91327 0.98688 1.06422 1.20888 0.99921 0.90969 0.97724 1.19841 0.93524 0.95443 1.02329 1.20613 1.00232 0.92959 0.97700 1.21320 1.01894 0.95392 0.94975 1.21790 1.02260 0.98658 0.95700 1.20437 0.78218 0.81374 0.90758 1.90692 1.49863 1.53986 1.46457 1.48238 1.57994 1.18359 1.08549 1.19323 0.96666 0.96009 0.75456 1.21380 1.03586 1.33151 0.98588 0.92490 1.24918 0.96263 0.96391 0.96437 1.69905 1.30285 1.45397 1.07692 0.86584 0.83068 0.80204 0.77721 1.20270 1.21207 1.20182 1.21280 0.91375 0.97425 0.90708 1.19914 0.99948 0.97342 0.92042 1.29063 0.93175 0.93722 0.94051 1.81139 1.09234 1.10142 1.11896 1.20873 0.94126 0.97039 0.97430 1.21213 0.99924 0.92416 1.08879 0.88359 0.92743 0.92589 0.85353 0.85254 0.91079 0.91009 0.91046 0.91058 0.89401 0.89595 0.94847 0.93631 0.92627 0.88946 0.90571 0.87534 0.86577 0.85706 0.85647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.29 10.50 -19.44 -0.20 -3.49 16 3 C 0.12 1.27 6.69 -39.21 -0.26 1.00 16 4 C -0.15 -1.57 9.99 -39.43 -0.39 -1.96 16 5 C -0.08 -0.77 9.69 -39.61 -0.38 -1.15 16 6 C -0.11 -1.15 5.14 -104.60 -0.54 -1.68 16 7 C -0.08 -0.72 5.34 -27.88 -0.15 -0.86 16 8 C -0.10 -1.18 4.49 -26.73 -0.12 -1.30 16 9 C -0.14 -1.72 4.25 -27.88 -0.12 -1.84 16 10 C 0.51 9.07 7.67 -10.98 -0.08 8.99 16 11 O -0.53 -12.29 15.56 5.56 0.09 -12.20 16 12 N -0.60 -10.81 2.46 -175.06 -0.43 -11.24 16 13 C 0.24 5.78 5.16 -5.19 -0.03 5.75 16 14 C -0.53 -14.11 9.39 -34.44 -0.32 -14.43 16 15 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 18 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.12 1.54 5.17 -4.05 -0.02 1.52 16 23 C -0.05 -0.52 6.03 -29.51 -0.18 -0.69 16 24 C 0.22 2.57 15.43 -20.81 -0.32 2.25 16 25 N -0.45 -6.46 18.53 42.09 0.78 -5.68 16 26 C -0.08 -0.78 9.69 -39.61 -0.38 -1.17 16 27 C -0.21 -2.06 9.04 -39.43 -0.36 -2.42 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 34 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 35 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 36 H 0.07 1.00 8.10 -51.92 -0.42 0.58 16 37 H 0.09 0.92 7.40 -51.93 -0.38 0.53 16 38 H 0.09 0.78 7.19 -51.93 -0.37 0.41 16 39 H 0.03 0.78 8.07 -51.93 -0.42 0.37 16 40 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.09 1.30 8.07 -51.93 -0.42 0.89 16 43 H 0.08 0.81 6.44 -51.93 -0.33 0.47 16 44 H 0.11 0.85 7.22 -51.93 -0.37 0.48 16 45 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 47 H 0.13 1.00 6.30 -52.49 -0.33 0.67 16 LS Contribution 401.99 15.07 6.06 6.06 Total: -1.00 -34.30 401.99 -7.92 -42.21 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -7.16 Total: -1.82 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -2.76 Total: -5.22 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 1.09 Total: -41.77 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.12 Total: -15.69 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.30 -7.92 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061427607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.280 kcal (2) G-P(sol) polarization free energy of solvation -34.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds