Wall clock time and date at job start Sat Apr 11 2020 02:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47169 * 2 1 4 4 C 1.53005 * 109.46588 * 240.00543 * 2 1 3 5 5 C 1.52998 * 117.49555 * 128.74762 * 4 2 1 6 6 C 1.53001 * 117.49982 * 60.08883 * 4 2 1 7 7 N 1.46489 * 109.47367 * 120.00634 * 2 1 3 8 8 C 1.46504 * 120.00051 * 59.99646 * 7 2 1 9 9 S 1.65606 * 120.00129 * 239.99892 * 7 2 1 10 10 O 1.42105 * 106.40008 * 336.45751 * 9 7 2 11 11 O 1.42098 * 106.40370 * 203.53936 * 9 7 2 12 12 N 1.65595 * 107.22013 * 89.99663 * 9 7 2 13 13 C 1.46925 * 120.63264 * 269.72636 * 12 9 7 14 14 C 1.52761 * 109.00629 * 233.58452 * 13 12 9 15 15 C 1.53049 * 109.38118 * 305.58347 * 14 13 12 16 16 C 1.53004 * 109.44919 * 181.25415 * 15 14 13 17 17 C 1.50695 * 109.46785 * 64.93913 * 16 15 14 18 18 H 1.07999 * 120.00632 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99861 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00177 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99978 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47264 * 90.00177 * 21 19 17 23 23 H 1.48503 * 109.47382 * 210.00210 * 21 19 17 24 24 H 1.48500 * 109.47124 * 330.00203 * 21 19 17 25 25 C 1.53038 * 109.53520 * 61.24312 * 15 14 13 26 26 C 1.46933 * 120.62849 * 90.00117 * 12 9 7 27 27 H 1.09010 * 109.46956 * 299.99542 * 1 2 3 28 28 H 1.09001 * 109.47294 * 59.99252 * 1 2 3 29 29 H 1.08997 * 109.47095 * 179.97438 * 1 2 3 30 30 H 1.08996 * 115.54683 * 274.41437 * 4 2 1 31 31 H 1.09003 * 117.50254 * 359.97438 * 5 4 2 32 32 H 1.09005 * 117.49830 * 145.01869 * 5 4 2 33 33 H 1.08995 * 117.49521 * 214.97906 * 6 4 2 34 34 H 1.09000 * 117.49836 * 359.97438 * 6 4 2 35 35 H 1.08999 * 109.47095 * 270.00091 * 8 7 2 36 36 H 1.08991 * 109.46942 * 30.00504 * 8 7 2 37 37 H 1.09009 * 109.46796 * 150.00143 * 8 7 2 38 38 H 1.08997 * 109.58679 * 353.41272 * 13 12 9 39 39 H 1.09000 * 109.58887 * 113.84231 * 13 12 9 40 40 H 1.09001 * 109.56870 * 185.55054 * 14 13 12 41 41 H 1.08996 * 109.36683 * 65.49385 * 14 13 12 42 42 H 1.08995 * 109.45784 * 301.22004 * 15 14 13 43 43 H 1.08999 * 109.47205 * 184.93693 * 16 15 14 44 44 H 1.09003 * 109.47106 * 304.94412 * 16 15 14 45 45 H 0.97001 * 120.00079 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.49523 * 178.68402 * 25 15 14 47 47 H 1.08998 * 109.50031 * 58.58447 * 25 15 14 48 48 H 1.09001 * 109.58300 * 246.15571 * 26 12 9 49 49 H 1.09000 * 109.58498 * 6.44033 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.0762 0.0041 -2.1102 6 6 1.6373 -0.1481 -2.6097 7 7 2.0184 -0.6907 1.1960 8 6 1.6644 -2.0933 1.4277 9 16 2.9705 0.1140 2.2861 10 8 3.5795 1.1828 1.5748 11 8 3.7119 -0.8791 2.9812 12 7 1.9609 0.8088 3.3998 13 6 1.4423 2.1681 3.1948 14 6 1.7580 3.0123 4.4282 15 6 1.2129 2.3127 5.6755 16 6 1.5006 3.1720 6.9083 17 6 0.7349 4.4660 6.8084 18 1 0.1063 4.6568 5.9512 19 6 0.8377 5.4070 7.8109 20 7 0.1691 6.5363 7.7240 21 14 1.9256 5.0775 9.2933 22 1 3.2967 5.5791 9.0223 23 1 1.3691 5.7747 10.4805 24 1 1.9757 3.6167 9.5555 25 6 1.8900 0.9495 5.8348 26 6 1.5715 0.0799 4.6146 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 2.1252 -1.8045 -1.1649 31 1 3.3944 0.9952 -1.7867 32 1 3.8430 -0.6022 -2.5924 33 1 1.4580 -0.8544 -3.4202 34 1 1.0088 0.7425 -2.6145 35 1 0.7376 -2.1445 1.9991 36 1 1.5295 -2.5968 0.4706 37 1 2.4630 -2.5820 1.9861 38 1 1.9162 2.6118 2.3191 39 1 0.3629 2.1292 3.0484 40 1 1.2925 3.9928 4.3284 41 1 2.8378 3.1293 4.5194 42 1 0.1367 2.1738 5.5728 43 1 1.1917 2.6353 7.8054 44 1 2.5683 3.3848 6.9617 45 1 0.2411 7.1981 8.4295 46 1 1.5185 0.4619 6.7361 47 1 2.9686 1.0860 5.9127 48 1 0.5028 -0.1327 4.5864 49 1 2.1286 -0.8551 4.6741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575042215.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:37:58 Heat of formation + Delta-G solvation = -62.479609 kcal Electronic energy + Delta-G solvation = -28041.740615 eV Core-core repulsion = 24323.903476 eV Total energy + Delta-G solvation = -3717.837139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.86118 -38.38075 -37.33205 -35.84163 -35.52468 -33.98922 -31.98971 -30.81188 -30.60157 -28.21466 -26.71874 -24.29184 -23.99896 -22.96934 -22.53514 -21.14878 -20.27910 -19.60285 -18.98341 -17.87885 -17.49211 -16.67852 -16.63111 -15.62801 -15.09707 -14.72193 -14.36767 -14.32550 -14.14297 -14.00179 -13.73760 -13.43472 -13.20417 -13.14190 -12.84664 -12.73610 -12.51635 -12.44839 -12.37359 -12.02012 -11.83817 -11.80284 -11.77565 -11.53210 -11.43800 -11.14628 -10.99279 -10.81922 -10.68445 -10.59696 -10.33050 -10.29624 -9.87869 -9.65823 -9.51963 -9.29837 -9.04297 -8.75200 -8.52079 -6.03158 -4.00235 0.51423 2.77988 3.32142 3.35946 3.39677 3.43294 3.57091 4.17274 4.32356 4.46777 4.59319 4.61377 4.76195 4.84357 4.84864 5.05132 5.09561 5.24746 5.28280 5.29156 5.34607 5.35904 5.39970 5.48591 5.51255 5.56680 5.62904 5.63594 5.74465 5.77427 5.79990 5.86521 5.88629 5.93326 6.04879 6.12464 6.26037 6.33337 6.45304 6.60744 6.67188 6.86311 6.90195 7.05064 7.29433 7.46251 7.81612 8.55095 9.01607 9.60252 11.10081 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022732 B = 0.003030 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.439684 B = 9239.054856 C = 9688.524303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.175 3.825 3 H 0.099 0.901 4 C -0.165 4.165 5 C -0.179 4.179 6 C -0.173 4.173 7 N -1.004 6.004 8 C 0.085 3.915 9 S 2.781 3.219 10 O -0.974 6.974 11 O -0.979 6.979 12 N -1.001 6.001 13 C 0.119 3.881 14 C -0.118 4.118 15 C -0.069 4.069 16 C -0.011 4.011 17 C -0.515 4.515 18 H 0.074 0.926 19 C 0.065 3.935 20 N -0.905 5.905 21 Si 0.878 3.122 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.266 1.266 25 C -0.130 4.130 26 C 0.122 3.878 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.016 0.984 44 H 0.011 0.989 45 H 0.262 0.738 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 -18.208 -18.285 25.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.069 3.931 3 H 0.117 0.883 4 C -0.184 4.184 5 C -0.216 4.216 6 C -0.210 4.210 7 N -0.842 5.842 8 C -0.061 4.061 9 S 2.792 3.208 10 O -0.958 6.958 11 O -0.963 6.963 12 N -0.842 5.842 13 C -0.006 4.006 14 C -0.157 4.157 15 C -0.088 4.088 16 C -0.048 4.048 17 C -0.553 4.553 18 H 0.092 0.908 19 C -0.136 4.136 20 N -0.544 5.544 21 Si 0.706 3.294 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.191 1.191 25 C -0.169 4.169 26 C -0.003 4.003 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.034 0.966 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.690 -18.016 -18.200 25.664 hybrid contribution 0.102 -0.089 0.872 0.882 sum 1.792 -18.105 -17.328 25.125 Atomic orbital electron populations 1.22125 0.94360 1.02708 1.02554 1.20435 0.94508 0.95725 0.82446 0.88319 1.22610 1.04671 0.99760 0.91386 1.23111 0.92413 1.02578 1.03539 1.22952 0.98401 1.03259 0.96425 1.57997 1.70145 1.21029 1.35075 1.21501 1.01159 0.80963 1.02429 1.01985 0.73469 0.72866 0.72519 1.93586 1.73808 1.55318 1.73094 1.93568 1.68539 1.60663 1.73481 1.58010 1.67809 1.24821 1.33604 1.21504 0.98822 0.80338 0.99964 1.21789 1.01448 0.99361 0.93092 1.20961 0.98909 0.92722 0.96202 1.19635 0.96541 0.95583 0.93043 1.21140 1.27452 0.99566 1.07118 0.90837 1.25030 0.95434 0.94965 0.98129 1.69914 1.42467 1.07893 1.34140 0.86806 0.81031 0.78841 0.82748 1.20395 1.21543 1.19062 1.22012 1.01424 0.97142 0.96340 1.21456 1.00117 0.94606 0.84111 0.91837 0.91425 0.92020 0.87354 0.88107 0.88827 0.88747 0.88471 0.92739 0.90830 0.90172 0.89878 0.91693 0.89229 0.92327 0.91742 0.96617 0.97087 0.92829 0.91155 0.91972 0.91671 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.03 37.16 0.34 -0.84 16 2 C 0.18 1.60 2.86 -67.93 -0.19 1.41 16 3 H 0.10 1.02 6.67 -51.93 -0.35 0.67 16 4 C -0.16 -1.33 5.15 -90.62 -0.47 -1.80 16 5 C -0.18 -1.50 10.18 -26.69 -0.27 -1.77 16 6 C -0.17 -1.18 9.74 -26.69 -0.26 -1.44 16 7 N -1.00 -10.20 3.13 -114.61 -0.36 -10.56 16 8 C 0.09 0.67 9.69 59.85 0.58 1.25 16 9 S 2.78 38.33 6.14 -107.50 -0.66 37.67 16 10 O -0.97 -15.85 15.28 -57.17 -0.87 -16.73 16 11 O -0.98 -15.64 15.33 -57.17 -0.88 -16.52 16 12 N -1.00 -13.58 3.35 -113.76 -0.38 -13.96 16 13 C 0.12 1.68 6.45 -3.93 -0.03 1.65 16 14 C -0.12 -2.09 5.17 -26.83 -0.14 -2.23 16 15 C -0.07 -1.29 2.10 -90.57 -0.19 -1.48 16 16 C -0.01 -0.25 3.52 -27.88 -0.10 -0.35 16 17 C -0.51 -14.15 8.94 -34.44 -0.31 -14.46 16 18 H 0.07 2.14 7.30 -52.49 -0.38 1.76 16 19 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 20 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 21 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 25 C -0.13 -2.04 5.36 -26.61 -0.14 -2.18 16 26 C 0.12 1.59 6.48 -3.71 -0.02 1.57 16 27 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 28 H 0.07 0.44 7.29 -51.93 -0.38 0.06 16 29 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 30 H 0.11 0.80 6.59 -51.93 -0.34 0.46 16 31 H 0.10 0.94 8.05 -51.93 -0.42 0.52 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.62 7.61 -51.93 -0.40 0.22 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.45 6.42 -51.93 -0.33 0.11 16 37 H 0.08 0.69 7.02 -51.92 -0.36 0.32 16 38 H 0.08 1.13 6.91 -51.93 -0.36 0.77 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.74 6.91 -51.93 -0.36 1.38 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 44 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.08 1.00 6.92 -51.93 -0.36 0.64 16 LS Contribution 385.42 15.07 5.81 5.81 Total: -1.00 -33.16 385.42 -11.14 -44.30 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -8.60 Total: -1.36 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -1.30 Total: -18.90 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 0.03 Total: -51.35 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -1.75 Total: -33.24 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Atomic # 16 Polarization: 38.33 SS G_CDS: -0.66 Total: 37.67 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.16 -11.14 -44.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575042215.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.182 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds