Wall clock time and date at job start Sat Apr 11 2020 02:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47169 * 2 1 4 4 C 1.53005 * 109.46588 * 240.00543 * 2 1 3 5 5 C 1.52998 * 117.49555 * 128.74762 * 4 2 1 6 6 C 1.53001 * 117.49982 * 60.08883 * 4 2 1 7 7 N 1.46489 * 109.47367 * 120.00634 * 2 1 3 8 8 C 1.46504 * 120.00051 * 59.99646 * 7 2 1 9 9 S 1.65606 * 120.00129 * 239.99892 * 7 2 1 10 10 O 1.42105 * 106.40008 * 336.45751 * 9 7 2 11 11 O 1.42098 * 106.40370 * 203.53936 * 9 7 2 12 12 N 1.65595 * 107.22013 * 89.99663 * 9 7 2 13 13 C 1.46925 * 120.63264 * 269.72636 * 12 9 7 14 14 C 1.52761 * 109.00629 * 233.58452 * 13 12 9 15 15 C 1.53049 * 109.38118 * 305.58347 * 14 13 12 16 16 C 1.53004 * 109.44919 * 181.25415 * 15 14 13 17 17 C 1.50695 * 109.46785 * 64.93913 * 16 15 14 18 18 H 1.07999 * 120.00632 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99861 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00177 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99978 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47264 * 90.00177 * 21 19 17 23 23 H 1.48503 * 109.47382 * 210.00210 * 21 19 17 24 24 H 1.48500 * 109.47124 * 330.00203 * 21 19 17 25 25 C 1.53038 * 109.53520 * 61.24312 * 15 14 13 26 26 C 1.46933 * 120.62849 * 90.00117 * 12 9 7 27 27 H 1.09010 * 109.46956 * 299.99542 * 1 2 3 28 28 H 1.09001 * 109.47294 * 59.99252 * 1 2 3 29 29 H 1.08997 * 109.47095 * 179.97438 * 1 2 3 30 30 H 1.08996 * 115.54683 * 274.41437 * 4 2 1 31 31 H 1.09003 * 117.50254 * 359.97438 * 5 4 2 32 32 H 1.09005 * 117.49830 * 145.01869 * 5 4 2 33 33 H 1.08995 * 117.49521 * 214.97906 * 6 4 2 34 34 H 1.09000 * 117.49836 * 359.97438 * 6 4 2 35 35 H 1.08999 * 109.47095 * 270.00091 * 8 7 2 36 36 H 1.08991 * 109.46942 * 30.00504 * 8 7 2 37 37 H 1.09009 * 109.46796 * 150.00143 * 8 7 2 38 38 H 1.08997 * 109.58679 * 353.41272 * 13 12 9 39 39 H 1.09000 * 109.58887 * 113.84231 * 13 12 9 40 40 H 1.09001 * 109.56870 * 185.55054 * 14 13 12 41 41 H 1.08996 * 109.36683 * 65.49385 * 14 13 12 42 42 H 1.08995 * 109.45784 * 301.22004 * 15 14 13 43 43 H 1.08999 * 109.47205 * 184.93693 * 16 15 14 44 44 H 1.09003 * 109.47106 * 304.94412 * 16 15 14 45 45 H 0.97001 * 120.00079 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.49523 * 178.68402 * 25 15 14 47 47 H 1.08998 * 109.50031 * 58.58447 * 25 15 14 48 48 H 1.09001 * 109.58300 * 246.15571 * 26 12 9 49 49 H 1.09000 * 109.58498 * 6.44033 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.0762 0.0041 -2.1102 6 6 1.6373 -0.1481 -2.6097 7 7 2.0184 -0.6907 1.1960 8 6 1.6644 -2.0933 1.4277 9 16 2.9705 0.1140 2.2861 10 8 3.5795 1.1828 1.5748 11 8 3.7119 -0.8791 2.9812 12 7 1.9609 0.8088 3.3998 13 6 1.4423 2.1681 3.1948 14 6 1.7580 3.0123 4.4282 15 6 1.2129 2.3127 5.6755 16 6 1.5006 3.1720 6.9083 17 6 0.7349 4.4660 6.8084 18 1 0.1063 4.6568 5.9512 19 6 0.8377 5.4070 7.8109 20 7 0.1691 6.5363 7.7240 21 14 1.9256 5.0775 9.2933 22 1 3.2967 5.5791 9.0223 23 1 1.3691 5.7747 10.4805 24 1 1.9757 3.6167 9.5555 25 6 1.8900 0.9495 5.8348 26 6 1.5715 0.0799 4.6146 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 2.1252 -1.8045 -1.1649 31 1 3.3944 0.9952 -1.7867 32 1 3.8430 -0.6022 -2.5924 33 1 1.4580 -0.8544 -3.4202 34 1 1.0088 0.7425 -2.6145 35 1 0.7376 -2.1445 1.9991 36 1 1.5295 -2.5968 0.4706 37 1 2.4630 -2.5820 1.9861 38 1 1.9162 2.6118 2.3191 39 1 0.3629 2.1292 3.0484 40 1 1.2925 3.9928 4.3284 41 1 2.8378 3.1293 4.5194 42 1 0.1367 2.1738 5.5728 43 1 1.1917 2.6353 7.8054 44 1 2.5683 3.3848 6.9617 45 1 0.2411 7.1981 8.4295 46 1 1.5185 0.4619 6.7361 47 1 2.9686 1.0860 5.9127 48 1 0.5028 -0.1327 4.5864 49 1 2.1286 -0.8551 4.6741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575042215.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:37:57 Heat of formation + Delta-G solvation = -83.594285 kcal Electronic energy + Delta-G solvation = -28042.656216 eV Core-core repulsion = 24323.903476 eV Total energy + Delta-G solvation = -3718.752740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.67830 -39.52109 -38.48637 -37.01266 -36.21421 -35.67624 -33.90135 -32.01473 -31.25571 -29.98676 -27.38069 -25.80413 -24.76720 -24.23838 -23.12018 -22.73421 -21.12224 -20.89204 -19.92170 -19.09216 -18.68875 -18.55400 -17.49113 -16.57000 -16.37015 -15.78904 -15.61947 -15.35121 -15.26952 -15.11578 -15.05025 -14.66363 -14.52878 -14.30224 -13.89944 -13.73410 -13.65708 -13.44194 -13.42624 -13.23043 -13.09299 -12.96244 -12.90333 -12.63069 -12.48190 -12.30315 -12.18022 -12.08997 -11.99471 -11.78583 -11.71149 -11.37835 -11.27165 -11.05580 -10.92123 -10.89227 -10.71910 -10.07400 -9.90433 -8.25187 -6.26290 -0.53881 1.35698 1.36764 1.48125 1.82043 2.37755 2.38591 2.91469 3.10506 3.18633 3.62026 3.71775 3.88991 3.99243 4.02939 4.03791 4.18463 4.20040 4.27603 4.41399 4.45446 4.48638 4.50673 4.58167 4.72209 4.79254 4.80065 4.82621 4.86357 4.90788 4.97560 4.99562 5.01382 5.05422 5.13743 5.19997 5.23190 5.28057 5.30063 5.32460 5.39178 5.44544 5.49391 5.59751 5.72479 5.76808 5.81290 6.35410 6.81229 7.37419 8.91074 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022732 B = 0.003030 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.439684 B = 9239.054856 C = 9688.524303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.170 3.830 3 H 0.081 0.919 4 C -0.168 4.168 5 C -0.200 4.200 6 C -0.155 4.155 7 N -0.995 5.995 8 C 0.078 3.922 9 S 2.792 3.208 10 O -1.006 7.006 11 O -1.002 7.002 12 N -1.003 6.003 13 C 0.128 3.872 14 C -0.118 4.118 15 C -0.066 4.066 16 C -0.010 4.010 17 C -0.514 4.514 18 H 0.042 0.958 19 C 0.003 3.997 20 N -0.952 5.952 21 Si 0.942 3.058 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.247 1.247 25 C -0.128 4.128 26 C 0.124 3.876 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.044 0.956 42 H 0.065 0.935 43 H 0.020 0.980 44 H 0.007 0.993 45 H 0.263 0.737 46 H 0.086 0.914 47 H 0.051 0.949 48 H 0.092 0.908 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.256 -21.099 -18.912 28.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.064 3.936 3 H 0.099 0.901 4 C -0.188 4.188 5 C -0.237 4.237 6 C -0.192 4.192 7 N -0.836 5.836 8 C -0.067 4.067 9 S 2.803 3.197 10 O -0.990 6.990 11 O -0.986 6.986 12 N -0.843 5.843 13 C 0.003 3.997 14 C -0.157 4.157 15 C -0.084 4.084 16 C -0.048 4.048 17 C -0.553 4.553 18 H 0.061 0.939 19 C -0.193 4.193 20 N -0.594 5.594 21 Si 0.766 3.234 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.170 1.170 25 C -0.167 4.167 26 C -0.001 4.001 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.137 0.863 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.129 0.871 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.038 0.962 44 H 0.025 0.975 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.069 0.931 48 H 0.110 0.890 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.183 -20.930 -18.825 28.176 hybrid contribution 0.231 0.830 0.972 1.298 sum 1.414 -20.100 -17.854 26.922 Atomic orbital electron populations 1.22099 0.92660 1.03654 1.02853 1.20570 0.95771 0.94939 0.82336 0.90096 1.22643 1.04619 1.00139 0.91392 1.23144 0.93690 1.02023 1.04822 1.23034 0.96779 1.03479 0.95947 1.57712 1.69743 1.21798 1.34391 1.21744 1.01656 0.79340 1.03958 1.01430 0.73537 0.72247 0.72488 1.93543 1.75007 1.56712 1.73717 1.93531 1.69634 1.61126 1.74292 1.57957 1.67609 1.24519 1.34242 1.21355 1.00150 0.80193 0.97981 1.21711 1.00153 0.98945 0.94909 1.20871 0.99399 0.93848 0.94307 1.19622 0.95365 0.94278 0.95496 1.21480 1.26711 1.01351 1.05720 0.93949 1.25934 0.97096 0.94787 1.01521 1.70061 1.44660 1.09176 1.35472 0.85780 0.78947 0.79733 0.78905 1.19997 1.21200 1.17047 1.21972 1.00389 0.95713 0.98640 1.21552 1.01999 0.94203 0.82351 0.92348 0.90371 0.90693 0.86258 0.89883 0.88234 0.87070 0.88019 0.90914 0.88611 0.90946 0.89574 0.89552 0.91910 0.93748 0.91618 0.96217 0.97502 0.92784 0.89586 0.93051 0.89016 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.03 71.98 0.65 -1.21 16 2 C 0.17 2.79 2.86 45.00 0.13 2.92 16 3 H 0.08 1.63 6.67 -2.38 -0.02 1.62 16 4 C -0.17 -2.37 5.15 -10.79 -0.06 -2.42 16 5 C -0.20 -3.17 10.18 30.62 0.31 -2.86 16 6 C -0.15 -1.75 9.74 30.62 0.30 -1.45 16 7 N -1.00 -18.22 3.13 -516.51 -1.62 -19.84 16 8 C 0.08 0.99 9.69 127.77 1.24 2.23 16 9 S 2.79 74.10 6.14 -56.49 -0.35 73.76 16 10 O -1.01 -32.89 15.28 -128.00 -1.96 -34.85 16 11 O -1.00 -30.86 15.33 -128.00 -1.96 -32.83 16 12 N -1.00 -25.62 3.35 -513.84 -1.72 -27.34 16 13 C 0.13 3.54 6.45 86.22 0.56 4.10 16 14 C -0.12 -4.25 5.17 30.53 0.16 -4.10 16 15 C -0.07 -2.41 2.10 -10.76 -0.02 -2.43 16 16 C -0.01 -0.47 3.52 29.85 0.10 -0.37 16 17 C -0.51 -28.93 8.94 25.60 0.23 -28.70 16 18 H 0.04 2.58 7.30 -2.91 -0.02 2.56 16 19 C 0.00 0.16 5.47 84.65 0.46 0.63 16 20 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 21 Si 0.94 44.90 27.47 68.60 1.88 46.79 16 22 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 25 C -0.13 -3.76 5.36 30.67 0.16 -3.60 16 26 C 0.12 2.88 6.48 86.36 0.56 3.44 16 27 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.08 0.79 7.29 -2.39 -0.02 0.77 16 29 H 0.07 0.72 7.67 -2.39 -0.02 0.70 16 30 H 0.12 1.41 6.59 -2.39 -0.02 1.40 16 31 H 0.08 1.60 8.05 -2.39 -0.02 1.58 16 32 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 1.06 7.61 -2.39 -0.02 1.04 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.10 0.81 6.42 -2.39 -0.02 0.80 16 37 H 0.07 1.07 7.02 -2.38 -0.02 1.05 16 38 H 0.09 2.34 6.91 -2.39 -0.02 2.32 16 39 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 2.56 6.91 -2.39 -0.02 2.55 16 41 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 44 H 0.01 0.31 7.57 -2.39 -0.02 0.29 16 45 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 46 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 49 H 0.10 2.04 6.92 -2.39 -0.02 2.03 16 Total: -1.00 -73.25 385.42 0.22 -73.03 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.86 Total: 14.49 kcal Atomic # 6 Polarization: -38.60 SS G_CDS: 4.78 Total: -33.82 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -3.04 Total: -106.57 kcal Atomic # 8 Polarization: -63.76 SS G_CDS: -3.92 Total: -67.68 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.79 kcal Atomic # 16 Polarization: 74.10 SS G_CDS: -0.35 Total: 73.76 kcal Total: -73.25 0.22 -73.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575042215.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.563 kcal (2) G-P(sol) polarization free energy of solvation -73.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds