Wall clock time and date at job start Sat Apr 11 2020 02:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46992 * 2 1 4 4 C 1.52990 * 109.47011 * 120.00247 * 2 1 3 5 5 C 1.53000 * 117.50188 * 8.74798 * 4 2 1 6 6 C 1.52999 * 117.50298 * 300.08674 * 4 2 1 7 7 N 1.46498 * 109.47053 * 240.00414 * 2 1 3 8 8 C 1.46498 * 119.99874 * 300.00114 * 7 2 1 9 9 S 1.65595 * 120.00275 * 119.99825 * 7 2 1 10 10 O 1.42105 * 106.40149 * 23.54018 * 9 7 2 11 11 O 1.42098 * 106.40317 * 156.45891 * 9 7 2 12 12 N 1.65606 * 107.22013 * 270.00200 * 9 7 2 13 13 C 1.46923 * 120.62553 * 269.71749 * 12 9 7 14 14 C 1.53625 * 108.54012 * 126.36762 * 13 12 9 15 15 C 1.53043 * 109.24213 * 54.85673 * 14 13 12 16 16 C 1.53004 * 109.44825 * 178.49612 * 15 14 13 17 17 C 1.50697 * 109.46882 * 295.05836 * 16 15 14 18 18 H 1.07995 * 120.00639 * 359.97438 * 17 16 15 19 19 C 1.37887 * 119.99793 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99301 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99951 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47289 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47056 * 120.00222 * 21 19 17 24 24 H 1.48499 * 109.47111 * 239.99825 * 21 19 17 25 25 C 1.53044 * 109.53628 * 298.50763 * 15 14 13 26 26 C 1.46921 * 120.63289 * 89.99671 * 12 9 7 27 27 H 1.08997 * 109.46992 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47087 * 300.00172 * 1 2 3 29 29 H 1.08999 * 109.47078 * 59.99882 * 1 2 3 30 30 H 1.08999 * 115.54995 * 154.41637 * 4 2 1 31 31 H 1.09001 * 117.49928 * 359.97438 * 5 4 2 32 32 H 1.08998 * 117.50152 * 145.02232 * 5 4 2 33 33 H 1.09004 * 117.50104 * 214.98608 * 6 4 2 34 34 H 1.09005 * 117.49513 * 359.97248 * 6 4 2 35 35 H 1.09003 * 109.47325 * 269.99908 * 8 7 2 36 36 H 1.09004 * 109.47539 * 29.99621 * 8 7 2 37 37 H 1.08996 * 109.47424 * 150.00237 * 8 7 2 38 38 H 1.09003 * 109.58696 * 246.19856 * 13 12 9 39 39 H 1.09000 * 109.58966 * 6.63038 * 13 12 9 40 40 H 1.08994 * 109.63930 * 294.86214 * 14 13 12 41 41 H 1.09009 * 109.43212 * 174.72261 * 14 13 12 42 42 H 1.08997 * 109.46008 * 58.52805 * 15 14 13 43 43 H 1.09001 * 109.46849 * 55.05904 * 16 15 14 44 44 H 1.08996 * 109.46810 * 175.05871 * 16 15 14 45 45 H 0.97002 * 119.99121 * 180.02562 * 20 19 17 46 46 H 1.08993 * 109.49377 * 301.41584 * 25 15 14 47 47 H 1.08997 * 109.49591 * 181.31373 * 25 15 14 48 48 H 1.09003 * 109.58512 * 353.37799 * 26 12 9 49 49 H 1.09004 * 109.58693 * 113.65432 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.0109 -1.4566 2.1100 6 6 1.6341 -0.1508 2.6096 7 7 2.0184 -0.6905 -1.1962 8 6 1.6644 -2.0930 -1.4281 9 16 2.9704 0.1143 -2.2862 10 8 3.5794 1.1830 -1.5748 11 8 3.7118 -0.8788 -2.9815 12 7 1.9606 0.8092 -3.3998 13 6 1.5761 0.0828 -4.6176 14 6 0.0429 0.0663 -4.7130 15 6 -0.4821 1.5023 -4.6459 16 6 -2.0064 1.4942 -4.7782 17 6 -2.3891 0.9916 -6.1464 18 1 -1.6220 0.7069 -6.8513 19 6 -3.7188 0.8962 -6.4987 20 7 -4.6529 1.2434 -5.6405 21 14 -4.1933 0.2726 -8.1944 22 1 -2.9654 -0.0501 -8.9646 23 1 -5.0274 -0.9483 -8.0572 24 1 -4.9644 1.3211 -8.9095 25 6 -0.0900 2.1285 -3.3056 26 6 1.4372 2.1662 -3.1916 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.0330 -1.1628 1.1646 31 1 -0.0296 -1.4262 1.7866 32 1 1.3269 -2.3817 2.5921 33 1 2.3599 -0.2174 3.4201 34 1 1.0040 0.7387 2.6146 35 1 2.4157 -2.7377 -0.9718 36 1 0.6904 -2.3002 -0.9847 37 1 1.6238 -2.2851 -2.5003 38 1 1.9939 0.5852 -5.4901 39 1 1.9514 -0.9393 -4.5673 40 1 -0.3694 -0.5108 -3.8854 41 1 -0.2568 -0.3868 -5.6580 42 1 -0.0501 2.0852 -5.4593 43 1 -2.4335 0.8399 -4.0182 44 1 -2.3882 2.5060 -4.6429 45 1 -5.5883 1.1759 -5.8882 46 1 -0.5010 1.5319 -2.4913 47 1 -0.4842 3.1431 -3.2490 48 1 1.7211 2.5192 -2.2002 49 1 1.8459 2.8356 -3.9486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575042216.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:38:02 Heat of formation + Delta-G solvation = -62.990877 kcal Electronic energy + Delta-G solvation = -28537.297073 eV Core-core repulsion = 24819.437763 eV Total energy + Delta-G solvation = -3717.859310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.98918 -38.30431 -37.29563 -35.82141 -35.32449 -33.94901 -31.95788 -30.78956 -30.17836 -27.67326 -26.74986 -24.38756 -24.07772 -22.90174 -22.57851 -21.39822 -20.00864 -19.46057 -18.62751 -17.96416 -17.31368 -16.72727 -16.29563 -15.72681 -15.06017 -14.84153 -14.56500 -14.26590 -13.97477 -13.88432 -13.65782 -13.35818 -13.30243 -13.16276 -12.64784 -12.43271 -12.39741 -12.10467 -12.03872 -11.90018 -11.78785 -11.74375 -11.65154 -11.60269 -11.20706 -11.16119 -10.90583 -10.73433 -10.70202 -10.56083 -10.41310 -10.18347 -10.12332 -9.66186 -9.44445 -9.12769 -8.99056 -8.65048 -8.37987 -6.02927 -4.04405 0.58731 2.81910 3.28142 3.36539 3.39714 3.47566 3.61070 4.26895 4.43217 4.45754 4.54523 4.75546 4.79116 4.85460 5.05072 5.13302 5.22891 5.29365 5.32845 5.40515 5.42526 5.48113 5.52658 5.54215 5.60402 5.65414 5.68876 5.74958 5.78001 5.86558 5.90900 5.92910 5.98037 6.06475 6.16476 6.16862 6.34499 6.43230 6.53239 6.66774 6.72841 6.98451 7.01196 7.10621 7.64490 7.78714 7.97135 8.40232 9.02450 9.59702 11.08301 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015602 B = 0.003593 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.154489 B = 7790.596069 C = 8558.594373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.177 3.823 3 H 0.100 0.900 4 C -0.159 4.159 5 C -0.182 4.182 6 C -0.175 4.175 7 N -1.001 6.001 8 C 0.098 3.902 9 S 2.782 3.218 10 O -0.981 6.981 11 O -0.979 6.979 12 N -1.001 6.001 13 C 0.119 3.881 14 C -0.116 4.116 15 C -0.078 4.078 16 C 0.028 3.972 17 C -0.515 4.515 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.129 4.129 26 C 0.123 3.877 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.014 0.986 44 H 0.015 0.985 45 H 0.259 0.741 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.078 0.922 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.327 -3.778 13.664 18.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.071 3.929 3 H 0.118 0.882 4 C -0.179 4.179 5 C -0.218 4.218 6 C -0.213 4.213 7 N -0.840 5.840 8 C -0.048 4.048 9 S 2.792 3.208 10 O -0.965 6.965 11 O -0.963 6.963 12 N -0.842 5.842 13 C -0.006 4.006 14 C -0.155 4.155 15 C -0.097 4.097 16 C -0.009 4.009 17 C -0.553 4.553 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.716 3.284 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.168 4.168 26 C -0.002 4.002 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.033 0.967 44 H 0.033 0.967 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.115 -3.732 13.669 19.307 hybrid contribution -0.909 -0.431 -0.918 1.362 sum 12.206 -4.163 12.751 18.136 Atomic orbital electron populations 1.22364 0.94501 1.03030 1.03010 1.20343 0.94475 0.95636 0.82451 0.88171 1.22617 0.99814 1.04177 0.91336 1.23168 0.99148 0.95867 1.03662 1.22970 1.03805 0.97805 0.96675 1.57954 1.69956 1.21143 1.34966 1.21376 1.01414 0.80382 1.01630 1.01975 0.73555 0.72811 0.72446 1.93577 1.74154 1.55572 1.73153 1.93586 1.68661 1.60483 1.73548 1.58035 1.67028 1.25026 1.34094 1.21682 0.97413 0.95571 0.85936 1.21957 0.91908 0.98667 1.02981 1.21136 0.99802 0.94249 0.94474 1.19123 0.87928 0.97030 0.96803 1.21286 0.91592 1.42990 0.99457 0.92550 1.25016 0.96834 0.95653 0.96946 1.69973 1.00096 1.48603 1.34846 0.86602 0.78540 0.78503 0.84739 1.19749 1.21122 1.21132 1.22061 0.93410 1.01496 0.99857 1.21463 0.95486 0.81742 1.01509 0.91451 0.91461 0.91096 0.87672 0.87848 0.89119 0.88828 0.88484 0.92770 0.90746 0.91221 0.91332 0.90277 0.92364 0.89970 0.92379 0.96716 0.96709 0.93147 0.91977 0.91297 0.90360 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 7.77 37.16 0.29 -1.36 16 2 C 0.18 1.84 3.03 -67.93 -0.21 1.63 16 3 H 0.10 1.11 6.91 -51.93 -0.36 0.75 16 4 C -0.16 -1.47 5.48 -90.63 -0.50 -1.97 16 5 C -0.18 -1.42 9.57 -26.69 -0.26 -1.67 16 6 C -0.17 -1.38 9.90 -26.69 -0.26 -1.64 16 7 N -1.00 -11.47 3.13 -114.62 -0.36 -11.83 16 8 C 0.10 0.98 9.66 59.85 0.58 1.56 16 9 S 2.78 39.08 6.06 -107.50 -0.65 38.43 16 10 O -0.98 -15.62 15.42 -57.17 -0.88 -16.50 16 11 O -0.98 -15.95 15.92 -57.17 -0.91 -16.86 16 12 N -1.00 -13.81 3.34 -113.27 -0.38 -14.19 16 13 C 0.12 1.69 6.41 -3.49 -0.02 1.67 16 14 C -0.12 -1.93 5.21 -26.38 -0.14 -2.07 16 15 C -0.08 -1.43 2.10 -90.57 -0.19 -1.62 16 16 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 17 C -0.51 -13.65 8.39 -34.44 -0.29 -13.94 16 18 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -26.04 13.29 55.43 0.74 -25.30 16 21 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 C -0.13 -1.96 5.36 -26.61 -0.14 -2.10 16 26 C 0.12 1.65 6.37 -3.71 -0.02 1.63 16 27 H 0.07 0.62 5.49 -51.93 -0.29 0.33 16 28 H 0.07 0.57 7.07 -51.93 -0.37 0.20 16 29 H 0.07 0.78 6.27 -51.93 -0.33 0.46 16 30 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.10 0.79 5.85 -51.93 -0.30 0.48 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.72 7.60 -51.93 -0.39 0.33 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.65 6.43 -51.93 -0.33 0.32 16 37 H 0.07 0.71 7.79 -51.93 -0.40 0.31 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 1.05 7.12 -51.93 -0.37 0.68 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.48 6.91 -51.92 -0.36 1.12 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.06 0.92 6.27 -51.93 -0.33 0.59 16 47 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.08 0.96 7.13 -51.93 -0.37 0.59 16 49 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -31.63 382.91 -11.43 -43.06 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -8.35 Total: -0.69 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -1.38 Total: -17.88 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.00 Total: -51.32 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -1.79 Total: -33.36 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 39.08 SS G_CDS: -0.65 Total: 38.43 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.63 -11.43 -43.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575042216.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.932 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds