Wall clock time and date at job start Sat Apr 11 2020 02:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46992 * 2 1 4 4 C 1.52990 * 109.47011 * 120.00247 * 2 1 3 5 5 C 1.53000 * 117.50188 * 8.74798 * 4 2 1 6 6 C 1.52999 * 117.50298 * 300.08674 * 4 2 1 7 7 N 1.46498 * 109.47053 * 240.00414 * 2 1 3 8 8 C 1.46498 * 119.99874 * 300.00114 * 7 2 1 9 9 S 1.65595 * 120.00275 * 119.99825 * 7 2 1 10 10 O 1.42105 * 106.40149 * 23.54018 * 9 7 2 11 11 O 1.42098 * 106.40317 * 156.45891 * 9 7 2 12 12 N 1.65606 * 107.22013 * 270.00200 * 9 7 2 13 13 C 1.46923 * 120.62553 * 269.71749 * 12 9 7 14 14 C 1.53625 * 108.54012 * 126.36762 * 13 12 9 15 15 C 1.53043 * 109.24213 * 54.85673 * 14 13 12 16 16 C 1.53004 * 109.44825 * 178.49612 * 15 14 13 17 17 C 1.50697 * 109.46882 * 295.05836 * 16 15 14 18 18 H 1.07995 * 120.00639 * 359.97438 * 17 16 15 19 19 C 1.37887 * 119.99793 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99301 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99951 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47289 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47056 * 120.00222 * 21 19 17 24 24 H 1.48499 * 109.47111 * 239.99825 * 21 19 17 25 25 C 1.53044 * 109.53628 * 298.50763 * 15 14 13 26 26 C 1.46921 * 120.63289 * 89.99671 * 12 9 7 27 27 H 1.08997 * 109.46992 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47087 * 300.00172 * 1 2 3 29 29 H 1.08999 * 109.47078 * 59.99882 * 1 2 3 30 30 H 1.08999 * 115.54995 * 154.41637 * 4 2 1 31 31 H 1.09001 * 117.49928 * 359.97438 * 5 4 2 32 32 H 1.08998 * 117.50152 * 145.02232 * 5 4 2 33 33 H 1.09004 * 117.50104 * 214.98608 * 6 4 2 34 34 H 1.09005 * 117.49513 * 359.97248 * 6 4 2 35 35 H 1.09003 * 109.47325 * 269.99908 * 8 7 2 36 36 H 1.09004 * 109.47539 * 29.99621 * 8 7 2 37 37 H 1.08996 * 109.47424 * 150.00237 * 8 7 2 38 38 H 1.09003 * 109.58696 * 246.19856 * 13 12 9 39 39 H 1.09000 * 109.58966 * 6.63038 * 13 12 9 40 40 H 1.08994 * 109.63930 * 294.86214 * 14 13 12 41 41 H 1.09009 * 109.43212 * 174.72261 * 14 13 12 42 42 H 1.08997 * 109.46008 * 58.52805 * 15 14 13 43 43 H 1.09001 * 109.46849 * 55.05904 * 16 15 14 44 44 H 1.08996 * 109.46810 * 175.05871 * 16 15 14 45 45 H 0.97002 * 119.99121 * 180.02562 * 20 19 17 46 46 H 1.08993 * 109.49377 * 301.41584 * 25 15 14 47 47 H 1.08997 * 109.49591 * 181.31373 * 25 15 14 48 48 H 1.09003 * 109.58512 * 353.37799 * 26 12 9 49 49 H 1.09004 * 109.58693 * 113.65432 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.0109 -1.4566 2.1100 6 6 1.6341 -0.1508 2.6096 7 7 2.0184 -0.6905 -1.1962 8 6 1.6644 -2.0930 -1.4281 9 16 2.9704 0.1143 -2.2862 10 8 3.5794 1.1830 -1.5748 11 8 3.7118 -0.8788 -2.9815 12 7 1.9606 0.8092 -3.3998 13 6 1.5761 0.0828 -4.6176 14 6 0.0429 0.0663 -4.7130 15 6 -0.4821 1.5023 -4.6459 16 6 -2.0064 1.4942 -4.7782 17 6 -2.3891 0.9916 -6.1464 18 1 -1.6220 0.7069 -6.8513 19 6 -3.7188 0.8962 -6.4987 20 7 -4.6529 1.2434 -5.6405 21 14 -4.1933 0.2726 -8.1944 22 1 -2.9654 -0.0501 -8.9646 23 1 -5.0274 -0.9483 -8.0572 24 1 -4.9644 1.3211 -8.9095 25 6 -0.0900 2.1285 -3.3056 26 6 1.4372 2.1662 -3.1916 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.0330 -1.1628 1.1646 31 1 -0.0296 -1.4262 1.7866 32 1 1.3269 -2.3817 2.5921 33 1 2.3599 -0.2174 3.4201 34 1 1.0040 0.7387 2.6146 35 1 2.4157 -2.7377 -0.9718 36 1 0.6904 -2.3002 -0.9847 37 1 1.6238 -2.2851 -2.5003 38 1 1.9939 0.5852 -5.4901 39 1 1.9514 -0.9393 -4.5673 40 1 -0.3694 -0.5108 -3.8854 41 1 -0.2568 -0.3868 -5.6580 42 1 -0.0501 2.0852 -5.4593 43 1 -2.4335 0.8399 -4.0182 44 1 -2.3882 2.5060 -4.6429 45 1 -5.5883 1.1759 -5.8882 46 1 -0.5010 1.5319 -2.4913 47 1 -0.4842 3.1431 -3.2490 48 1 1.7211 2.5192 -2.2002 49 1 1.8459 2.8356 -3.9486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575042216.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:38:01 Heat of formation + Delta-G solvation = -81.857164 kcal Electronic energy + Delta-G solvation = -28538.115177 eV Core-core repulsion = 24819.437763 eV Total energy + Delta-G solvation = -3718.677413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.76630 -39.57497 -38.47502 -37.01273 -36.11593 -35.66756 -33.74667 -31.99284 -30.98963 -29.43549 -27.57162 -25.96302 -25.00847 -24.16143 -23.18329 -22.93824 -21.13674 -20.54755 -19.71076 -18.99007 -18.50252 -18.31976 -17.57574 -16.71009 -16.52635 -15.87402 -15.71568 -15.35489 -15.25551 -15.08235 -14.81529 -14.69176 -14.52448 -14.12816 -13.99473 -13.62793 -13.54636 -13.35722 -13.24429 -13.13197 -12.94191 -12.84425 -12.76408 -12.60554 -12.53121 -12.44911 -12.28779 -12.16930 -12.03169 -11.81208 -11.68445 -11.27516 -11.21283 -11.01209 -10.86686 -10.78244 -10.49178 -10.06159 -9.88434 -8.14182 -6.22129 -0.50637 1.40817 1.42962 1.54184 1.78462 2.41498 2.44370 2.94662 3.19471 3.20326 3.60426 3.76688 3.80016 4.06783 4.09534 4.09946 4.13367 4.25243 4.30545 4.36899 4.44026 4.49124 4.54114 4.61390 4.69876 4.72723 4.82882 4.84491 4.90122 4.91495 4.96740 5.01709 5.05058 5.10697 5.19731 5.28820 5.32517 5.34402 5.35255 5.39991 5.45275 5.52587 5.58795 5.64974 5.78226 5.88930 5.96284 6.34728 6.95026 7.46262 8.97526 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015602 B = 0.003593 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.154489 B = 7790.596069 C = 8558.594373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.175 3.825 3 H 0.092 0.908 4 C -0.173 4.173 5 C -0.173 4.173 6 C -0.171 4.171 7 N -0.998 5.998 8 C 0.091 3.909 9 S 2.795 3.205 10 O -1.000 7.000 11 O -1.001 7.001 12 N -1.001 6.001 13 C 0.126 3.874 14 C -0.109 4.109 15 C -0.072 4.072 16 C 0.035 3.965 17 C -0.525 4.525 18 H 0.062 0.938 19 C 0.000 4.000 20 N -0.934 5.934 21 Si 0.954 3.046 22 H -0.262 1.262 23 H -0.282 1.282 24 H -0.284 1.284 25 C -0.122 4.122 26 C 0.126 3.874 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.054 0.946 43 H -0.009 1.009 44 H -0.014 1.014 45 H 0.260 0.740 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.094 0.906 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.124 -4.487 14.034 19.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.069 3.931 3 H 0.110 0.890 4 C -0.193 4.193 5 C -0.209 4.209 6 C -0.209 4.209 7 N -0.838 5.838 8 C -0.054 4.054 9 S 2.805 3.195 10 O -0.984 6.984 11 O -0.985 6.985 12 N -0.842 5.842 13 C 0.000 4.000 14 C -0.148 4.148 15 C -0.090 4.090 16 C -0.002 4.002 17 C -0.563 4.563 18 H 0.080 0.920 19 C -0.197 4.197 20 N -0.575 5.575 21 Si 0.780 3.220 22 H -0.185 1.185 23 H -0.208 1.208 24 H -0.210 1.210 25 C -0.161 4.161 26 C 0.001 3.999 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.009 0.991 44 H 0.004 0.996 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.112 0.888 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.934 -4.440 14.033 20.268 hybrid contribution -1.186 -0.206 -0.972 1.548 sum 12.747 -4.646 13.061 18.833 Atomic orbital electron populations 1.22336 0.93924 1.03364 1.02877 1.20429 0.94840 0.95335 0.82459 0.88989 1.22533 0.99999 1.05363 0.91406 1.23212 0.98854 0.96193 1.02667 1.23071 1.03848 0.98113 0.95880 1.57780 1.69662 1.21610 1.34737 1.21543 1.02517 0.79562 1.01779 1.01453 0.73526 0.72244 0.72256 1.93547 1.74944 1.56422 1.73459 1.93552 1.69689 1.61025 1.74273 1.58007 1.66846 1.25215 1.34118 1.21602 0.95297 0.96585 0.86468 1.21826 0.93834 0.97057 1.02085 1.20985 0.95811 0.95918 0.96333 1.19005 0.91716 0.94431 0.95069 1.21711 0.91830 1.42199 1.00546 0.92021 1.25870 0.97029 0.96045 1.00754 1.70101 1.00420 1.50099 1.36918 0.85559 0.78444 0.77821 0.80195 1.18549 1.20768 1.20996 1.21959 0.94988 1.01304 0.97858 1.21481 0.93806 0.81785 1.02804 0.90866 0.90125 0.92661 0.88321 0.87532 0.88281 0.88013 0.88023 0.91855 0.89345 0.91469 0.90546 0.89029 0.92450 0.91567 0.92788 0.99075 0.99564 0.93128 0.91705 0.91119 0.88823 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 7.77 71.98 0.56 -2.41 16 2 C 0.18 3.40 3.03 44.99 0.14 3.53 16 3 H 0.09 1.93 6.91 -2.39 -0.02 1.92 16 4 C -0.17 -2.91 5.48 -10.80 -0.06 -2.97 16 5 C -0.17 -2.31 9.57 30.62 0.29 -2.01 16 6 C -0.17 -2.36 9.90 30.62 0.30 -2.06 16 7 N -1.00 -21.56 3.13 -516.53 -1.62 -23.18 16 8 C 0.09 1.68 9.66 127.77 1.23 2.92 16 9 S 2.79 75.06 6.06 -56.49 -0.34 74.72 16 10 O -1.00 -30.66 15.42 -128.00 -1.97 -32.64 16 11 O -1.00 -31.41 15.92 -128.00 -2.04 -33.45 16 12 N -1.00 -26.21 3.34 -512.29 -1.71 -27.93 16 13 C 0.13 3.39 6.41 86.51 0.55 3.94 16 14 C -0.11 -3.56 5.21 30.82 0.16 -3.40 16 15 C -0.07 -2.64 2.10 -10.76 -0.02 -2.66 16 16 C 0.03 1.71 4.45 29.85 0.13 1.84 16 17 C -0.52 -28.10 8.39 25.60 0.21 -27.88 16 18 H 0.06 3.17 7.06 -2.91 -0.02 3.15 16 19 C 0.00 0.01 5.46 84.66 0.46 0.48 16 20 N -0.93 -55.33 13.29 21.45 0.28 -55.05 16 21 Si 0.95 43.19 29.54 68.60 2.03 45.21 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 25 C -0.12 -3.62 5.36 30.67 0.16 -3.46 16 26 C 0.13 3.19 6.37 86.36 0.55 3.74 16 27 H 0.07 1.21 5.49 -2.39 -0.01 1.20 16 28 H 0.08 1.21 7.07 -2.39 -0.02 1.19 16 29 H 0.05 1.17 6.27 -2.39 -0.01 1.15 16 30 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.11 1.37 5.85 -2.39 -0.01 1.35 16 32 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.10 1.30 7.60 -2.38 -0.02 1.28 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 1.38 6.43 -2.39 -0.02 1.36 16 37 H 0.07 1.28 7.79 -2.39 -0.02 1.26 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.09 2.28 7.12 -2.39 -0.02 2.26 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.07 2.37 6.91 -2.38 -0.02 2.35 16 42 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 43 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 44 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 45 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 46 H 0.06 1.89 6.27 -2.39 -0.01 1.87 16 47 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.09 2.12 7.13 -2.39 -0.02 2.11 16 49 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -67.50 382.91 0.24 -67.27 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.92 Total: 15.45 kcal Atomic # 6 Polarization: -35.09 SS G_CDS: 4.68 Total: -30.41 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -3.04 Total: -106.15 kcal Atomic # 8 Polarization: -62.08 SS G_CDS: -4.01 Total: -66.09 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 75.06 SS G_CDS: -0.34 Total: 74.72 kcal Total: -67.50 0.24 -67.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575042216.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.590 kcal (2) G-P(sol) polarization free energy of solvation -67.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds