Wall clock time and date at job start Sat Apr 11 2020 02:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00047 * 2 1 4 4 C 1.52999 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46826 * 176.06375 * 4 3 2 6 6 C 1.52992 * 109.47172 * 56.06737 * 4 3 2 7 7 N 1.46897 * 109.46764 * 296.06348 * 4 3 2 8 8 C 1.46853 * 110.99721 * 172.35077 * 7 4 3 9 9 C 1.53037 * 109.52178 * 185.84270 * 8 7 4 10 10 C 1.53123 * 109.27609 * 300.81584 * 9 8 7 11 11 C 1.52996 * 109.52125 * 177.56290 * 10 9 8 12 12 N 1.46501 * 109.47440 * 65.31488 * 11 10 9 13 13 C 1.34778 * 120.00239 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00029 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00098 * 180.02562 * 13 12 11 16 16 S 1.81001 * 109.46948 * 179.97438 * 15 13 12 17 17 C 1.76205 * 99.99703 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99868 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99920 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99977 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99809 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46959 * 90.00655 * 21 19 17 23 23 H 1.48497 * 109.47089 * 210.00342 * 21 19 17 24 24 H 1.48500 * 109.47456 * 330.00612 * 21 19 17 25 25 C 1.53119 * 109.16136 * 57.65647 * 10 9 8 26 26 C 1.46848 * 111.00102 * 296.55320 * 7 4 3 27 27 H 1.08998 * 109.47097 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47450 * 300.00155 * 1 2 3 29 29 H 1.09001 * 109.47185 * 60.00348 * 1 2 3 30 30 H 1.09007 * 109.46987 * 300.00058 * 3 2 1 31 31 H 1.08994 * 109.47261 * 59.99334 * 3 2 1 32 32 H 1.09002 * 109.47783 * 60.00322 * 6 4 3 33 33 H 1.09002 * 109.47319 * 180.02562 * 6 4 3 34 34 H 1.09004 * 109.47446 * 299.99582 * 6 4 3 35 35 H 1.09000 * 109.45940 * 305.85243 * 8 7 4 36 36 H 1.09000 * 109.46565 * 65.82121 * 8 7 4 37 37 H 1.08998 * 109.50199 * 180.88001 * 9 8 7 38 38 H 1.08999 * 109.50382 * 60.75555 * 9 8 7 39 39 H 1.08999 * 109.52290 * 297.75274 * 10 9 8 40 40 H 1.08999 * 109.47234 * 185.31953 * 11 10 9 41 41 H 1.09002 * 109.47570 * 305.31396 * 11 10 9 42 42 H 0.97000 * 119.99535 * 0.02562 * 12 11 10 43 43 H 1.08999 * 109.46502 * 300.00118 * 15 13 12 44 44 H 1.08998 * 109.47166 * 60.00039 * 15 13 12 45 45 H 0.96998 * 119.99831 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.50415 * 182.40515 * 25 10 9 47 47 H 1.09005 * 109.49940 * 62.28492 * 25 10 9 48 48 H 1.08993 * 109.46401 * 294.18189 * 26 7 4 49 49 H 1.08999 * 109.45986 * 54.14876 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1780 -0.0712 6 6 3.9798 0.3419 -1.1978 7 7 3.9759 0.5391 1.2432 8 6 5.4134 0.2417 1.2012 9 6 5.8069 -0.5574 2.4457 10 6 5.4718 0.2586 3.6973 11 6 5.8067 -0.5596 4.9459 12 7 7.2535 -0.7804 5.0117 13 6 7.7825 -1.4815 6.0340 14 8 7.0608 -1.9292 6.8999 15 6 9.2708 -1.7081 6.1019 16 16 9.6670 -2.6750 7.5799 17 6 11.4173 -2.7881 7.4113 18 1 11.9095 -2.3263 6.5681 19 6 12.1633 -3.4715 8.3615 20 7 13.4710 -3.5555 8.2358 21 14 11.3118 -4.2707 9.8194 22 1 10.9386 -5.6652 9.4711 23 1 12.2316 -4.2809 10.9852 24 1 10.0884 -3.5014 10.1609 25 6 3.9784 0.5964 3.6921 26 6 3.6380 1.3621 2.4115 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 3.6530 0.8208 -2.1207 33 1 5.0663 0.2554 -1.1980 34 1 3.5367 -0.6516 -1.1273 35 1 5.6375 -0.3425 0.3087 36 1 5.9767 1.1745 1.1755 37 1 6.8767 -0.7646 2.4219 38 1 5.2540 -1.4966 2.4649 39 1 6.0537 1.1803 3.6977 40 1 5.4812 -0.0175 5.8337 41 1 5.2944 -1.5206 4.8989 42 1 7.8308 -0.4214 4.3197 43 1 9.5965 -2.2504 5.2143 44 1 9.7829 -0.7470 6.1489 45 1 13.9923 -4.0328 8.9001 46 1 3.7419 1.2136 4.5589 47 1 3.3968 -0.3247 3.7309 48 1 4.2095 2.2895 2.3800 49 1 2.5725 1.5916 2.3980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222425372.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:38:29 Heat of formation + Delta-G solvation = -88.622982 kcal Electronic energy + Delta-G solvation = -25945.012030 eV Core-core repulsion = 22226.041229 eV Total energy + Delta-G solvation = -3718.970801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.13267 -39.15139 -37.99717 -35.91973 -33.69415 -32.42069 -31.34798 -31.12751 -29.34380 -27.75867 -26.44841 -25.96043 -25.55380 -23.12326 -22.65557 -20.64792 -20.46044 -19.89106 -17.87775 -17.25029 -16.72116 -16.32566 -15.93094 -15.85772 -15.62259 -15.24619 -15.01416 -14.94033 -14.49497 -14.19937 -13.96465 -13.83858 -13.50162 -13.35750 -13.07052 -12.93318 -12.79548 -12.76642 -12.23088 -12.11517 -11.97533 -11.76070 -11.53842 -11.46907 -11.37809 -11.24547 -10.99150 -10.92719 -10.69303 -10.50815 -10.45261 -9.97148 -9.83601 -9.47186 -8.99345 -8.89749 -8.59182 -8.47560 -6.89461 -6.27256 -3.98680 2.80462 3.03184 3.33641 3.35343 3.37522 3.50771 3.52529 3.70111 4.34266 4.35142 4.40870 4.47877 4.54860 4.63993 4.77023 4.83137 4.88646 4.92395 4.96144 5.00580 5.05751 5.09722 5.11858 5.18571 5.26005 5.28039 5.30982 5.33364 5.39979 5.43854 5.48781 5.61189 5.61986 5.70702 5.79432 5.83454 5.87856 5.93992 5.98191 6.04100 6.17221 6.59294 6.70035 6.79058 6.88724 7.66529 7.95857 8.43268 8.54722 9.19073 10.81960 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.031471 B = 0.001837 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.499984 B =15235.819306 C =15623.567591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.369 6.369 3 C 0.068 3.932 4 C 0.083 3.917 5 H 0.051 0.949 6 C -0.146 4.146 7 N -0.523 5.523 8 C 0.052 3.948 9 C -0.112 4.112 10 C -0.099 4.099 11 C 0.128 3.872 12 N -0.736 5.736 13 C 0.530 3.470 14 O -0.521 6.521 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.107 4.107 26 C 0.055 3.945 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.030 0.970 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.398 0.602 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.270 0.730 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.031 0.969 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.168 13.468 -20.390 34.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.287 6.287 3 C -0.009 4.009 4 C -0.025 4.025 5 H 0.069 0.931 6 C -0.203 4.203 7 N -0.249 5.249 8 C -0.076 4.076 9 C -0.150 4.150 10 C -0.118 4.118 11 C 0.004 3.996 12 N -0.390 5.390 13 C 0.315 3.685 14 O -0.395 6.395 15 C -0.275 4.275 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.145 4.145 26 C -0.073 4.073 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.232 0.768 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.049 0.951 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -25.344 12.043 -18.826 33.790 hybrid contribution 1.277 1.389 -0.786 2.044 sum -24.067 13.432 -19.612 33.827 Atomic orbital electron populations 1.22733 0.81678 1.02746 0.99526 1.88009 1.18769 1.26761 1.95187 1.22594 0.93105 0.85432 0.99760 1.21657 0.93386 0.96469 0.91001 0.93138 1.21852 1.01126 1.01615 0.95746 1.61912 1.16079 1.45605 1.01277 1.22198 0.87209 0.98842 0.99303 1.21665 1.01174 0.99326 0.92821 1.21447 0.97139 0.98760 0.94472 1.21312 0.81163 0.99953 0.97212 1.45979 1.08119 1.57451 1.27486 1.20264 0.90101 0.77206 0.80896 1.90699 1.62001 1.48718 1.38120 1.23279 0.94036 1.05075 1.05078 1.84791 1.09370 1.69508 1.27929 1.22326 0.89045 1.41060 1.14447 0.89409 1.24715 0.94317 0.94728 0.97569 1.69941 1.04919 1.41093 1.35783 0.86730 0.81309 0.81432 0.82352 1.19200 1.19966 1.15922 1.21532 0.95135 1.01364 0.96503 1.22120 1.00695 0.94024 0.90428 0.89641 0.94328 0.94521 0.93237 0.93270 0.92467 0.92339 0.90598 0.89957 0.95128 0.91284 0.90539 0.90884 0.91697 0.91437 0.76804 0.88546 0.88551 0.91967 0.91209 0.90476 0.95119 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.12 9.80 -35.23 -0.35 -3.46 16 3 C 0.07 0.44 5.41 37.16 0.20 0.65 16 4 C 0.08 0.57 2.47 -67.72 -0.17 0.40 16 5 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 6 C -0.15 -0.96 8.53 37.15 0.32 -0.64 16 7 N -0.52 -4.14 4.46 -226.69 -1.01 -5.15 16 8 C 0.05 0.39 5.05 -3.83 -0.02 0.37 16 9 C -0.11 -0.92 5.22 -26.65 -0.14 -1.06 16 10 C -0.10 -0.82 2.29 -90.50 -0.21 -1.03 16 11 C 0.13 1.44 5.07 -4.04 -0.02 1.42 16 12 N -0.74 -9.44 5.31 -60.29 -0.32 -9.76 16 13 C 0.53 9.55 7.85 -10.98 -0.09 9.46 16 14 O -0.52 -11.48 15.86 5.55 0.09 -11.40 16 15 C -0.12 -2.42 6.16 36.01 0.22 -2.20 16 16 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 17 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 18 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.72 13.97 55.49 0.78 -25.95 16 21 Si 0.86 21.98 27.74 -169.99 -4.71 17.27 16 22 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 25 C -0.11 -0.83 5.38 -26.65 -0.14 -0.97 16 26 C 0.06 0.40 5.28 -3.83 -0.02 0.38 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.30 6.18 -51.93 -0.32 -0.02 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.36 6.19 -51.93 -0.32 0.04 16 34 H 0.08 0.63 7.58 -51.93 -0.39 0.23 16 35 H 0.08 0.61 5.85 -51.93 -0.30 0.30 16 36 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 0.54 7.27 -51.93 -0.38 0.16 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.40 4.00 7.69 -40.82 -0.31 3.68 16 43 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 44 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 49 H 0.07 0.52 6.05 -51.93 -0.31 0.20 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -34.50 395.30 -8.99 -43.49 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -8.69 Total: -1.29 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 1.26 Total: -4.06 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: -0.56 Total: -40.86 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.26 Total: -14.86 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.27 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.50 -8.99 -43.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222425372.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.138 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds