Wall clock time and date at job start Sat Apr 11 2020 02:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47024 * 119.99412 * 2 1 3 5 5 N 1.46898 * 109.47390 * 295.00117 * 4 2 1 6 6 C 1.46898 * 110.99934 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47127 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.48068 * 59.98266 * 7 6 5 9 9 C 1.53099 * 109.48210 * 180.02562 * 7 6 5 10 10 C 1.53180 * 109.16212 * 177.59717 * 9 7 6 11 11 C 1.53179 * 109.03371 * 303.01555 * 10 9 7 12 12 C 1.53100 * 109.16036 * 56.98761 * 11 10 9 13 13 O 1.42900 * 109.41401 * 302.38416 * 12 11 10 14 14 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 15 15 N 1.46505 * 109.47212 * 64.99775 * 14 2 1 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00597 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99622 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.47156 * 180.02562 * 18 16 15 20 20 C 1.76204 * 100.00151 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99845 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00054 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00100 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99948 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47220 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47248 * 120.00156 * 24 22 20 27 27 H 1.48501 * 109.47068 * 240.00173 * 24 22 20 28 28 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 29 29 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 31 31 H 1.09003 * 109.46810 * 55.00222 * 4 2 1 32 32 H 1.08998 * 109.47247 * 175.00091 * 4 2 1 33 33 H 1.00902 * 110.99797 * 56.04735 * 5 4 2 34 34 H 1.08999 * 109.47340 * 300.00296 * 6 5 4 35 35 H 1.09001 * 109.47031 * 60.00413 * 6 5 4 36 36 H 1.09002 * 109.51845 * 297.50293 * 9 7 6 37 37 H 1.08998 * 109.52167 * 57.68708 * 9 7 6 38 38 H 1.08991 * 109.54589 * 62.88737 * 10 9 7 39 39 H 1.08997 * 109.53848 * 183.07058 * 10 9 7 40 40 H 1.08999 * 109.51938 * 176.88682 * 11 10 9 41 41 H 1.08997 * 109.52495 * 297.01684 * 11 10 9 42 42 H 1.08994 * 109.48180 * 62.37251 * 12 11 10 43 43 H 1.09002 * 109.47923 * 182.40901 * 12 11 10 44 44 H 1.09002 * 109.47153 * 304.99767 * 14 2 1 45 45 H 1.09001 * 109.46832 * 184.99958 * 14 2 1 46 46 H 0.96996 * 119.99606 * 0.02562 * 15 14 2 47 47 H 1.09001 * 109.47380 * 300.00190 * 18 16 15 48 48 H 1.09002 * 109.47060 * 60.00278 * 18 16 15 49 49 H 0.96999 * 120.00126 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6514 0.0376 2.4456 6 6 2.1247 -0.6269 3.6672 7 6 1.7024 0.1913 4.8892 8 1 0.6156 0.2700 4.9160 9 6 2.1962 -0.5007 6.1625 10 6 1.8220 0.3545 7.3770 11 6 2.4212 1.7539 7.2062 12 6 1.9186 2.3588 5.8926 13 8 2.2728 1.4990 4.8076 14 6 2.0401 -0.7213 -1.2492 15 7 1.6525 0.0353 -2.4424 16 6 1.9965 -0.4132 -3.6658 17 8 2.6266 -1.4433 -3.7791 18 6 1.5973 0.3647 -4.8932 19 16 2.2008 -0.4885 -6.3711 20 6 1.6114 0.6069 -7.6190 21 1 1.0586 1.4927 -7.3429 22 6 1.8567 0.3310 -8.9570 23 7 2.5292 -0.7493 -9.2937 24 14 1.2312 1.4919 -10.2800 25 1 0.5086 2.6231 -9.6447 26 1 2.3795 2.0148 -11.0630 27 1 0.3076 0.7605 -11.1840 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6054 -1.7197 1.2952 32 1 3.1263 -0.7993 1.2057 33 1 0.6528 0.1794 2.4753 34 1 1.6904 -1.6246 3.7297 35 1 3.2116 -0.7048 3.6406 36 1 1.7279 -1.4812 6.2491 37 1 3.2792 -0.6160 6.1178 38 1 0.7371 0.4288 7.4503 39 1 2.2182 -0.1051 8.2824 40 1 2.1137 2.3859 8.0393 41 1 3.5087 1.6843 7.1837 42 1 0.8347 2.4657 5.9329 43 1 2.3754 3.3374 5.7449 44 1 1.6055 -1.7198 -1.2951 45 1 3.1264 -0.7994 -1.2055 46 1 1.1489 0.8593 -2.3517 47 1 0.5109 0.4421 -4.9370 48 1 2.0312 1.3636 -4.8474 49 1 2.7009 -0.9420 -10.2287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753617196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:38:58 Heat of formation + Delta-G solvation = -107.925744 kcal Electronic energy + Delta-G solvation = -25020.053398 eV Core-core repulsion = 21300.245566 eV Total energy + Delta-G solvation = -3719.807832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.88969 -39.26693 -37.57770 -35.19421 -34.03462 -32.96604 -32.40591 -31.25433 -29.28318 -27.40325 -26.47978 -25.46519 -24.75358 -23.69881 -22.21741 -20.78486 -20.52652 -20.08092 -17.81025 -17.16245 -16.57315 -16.28685 -16.13023 -15.72126 -15.39630 -15.14919 -15.05013 -14.78536 -14.67876 -14.30302 -14.06516 -13.80293 -13.54234 -13.15811 -13.07912 -12.94930 -12.75894 -12.58862 -12.54997 -12.37291 -11.78625 -11.73203 -11.54225 -11.41296 -11.09874 -11.06792 -11.04825 -11.00444 -10.98917 -10.73888 -10.64111 -9.80872 -9.77857 -9.35406 -9.05600 -8.82381 -8.71825 -8.20095 -6.47189 -6.19618 -3.89790 3.06523 3.15810 3.23220 3.29794 3.34329 3.36622 3.62272 3.88304 4.22596 4.28288 4.34122 4.38360 4.52324 4.63291 4.65616 4.69388 4.75774 4.79391 4.95334 5.04519 5.14387 5.15633 5.19329 5.21139 5.25118 5.30326 5.40667 5.41815 5.44645 5.46183 5.53951 5.56781 5.62437 5.67065 5.72113 5.78948 5.79576 5.93332 6.02980 6.10470 6.17911 6.60663 6.70520 6.89911 7.05669 7.62138 7.77282 8.37729 8.67351 9.25876 10.87909 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.037715 B = 0.001477 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.234483 B =18951.273356 C =19329.852578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 H 0.088 0.912 4 C 0.067 3.933 5 N -0.679 5.679 6 C 0.066 3.934 7 C 0.094 3.906 8 H 0.054 0.946 9 C -0.151 4.151 10 C -0.122 4.122 11 C -0.158 4.158 12 C 0.059 3.941 13 O -0.359 6.359 14 C 0.127 3.873 15 N -0.737 5.737 16 C 0.531 3.469 17 O -0.519 6.519 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.339 0.661 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.093 0.907 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.398 0.602 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.623 3.726 34.968 35.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.120 4.120 3 H 0.106 0.894 4 C -0.063 4.063 5 N -0.311 5.311 6 C -0.064 4.064 7 C 0.036 3.964 8 H 0.072 0.928 9 C -0.190 4.190 10 C -0.159 4.159 11 C -0.196 4.196 12 C -0.018 4.018 13 O -0.277 6.277 14 C 0.002 3.998 15 N -0.391 5.391 16 C 0.317 3.683 17 O -0.394 6.394 18 C -0.304 4.304 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.158 0.842 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.111 0.889 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.232 0.768 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.829 2.359 34.445 34.642 hybrid contribution -2.159 1.480 -0.286 2.633 sum -4.988 3.840 34.159 34.735 Atomic orbital electron populations 1.21887 0.94881 1.02018 1.02026 1.21358 0.96254 1.01163 0.93251 0.89368 1.21900 1.01102 0.94367 0.88930 1.60373 1.19614 1.50150 1.00932 1.21987 1.01823 0.94121 0.88439 1.22079 0.96506 0.84019 0.93832 0.92814 1.22193 1.02585 0.99271 0.94912 1.21567 1.00770 0.95524 0.98069 1.22212 1.01809 0.96950 0.98604 1.22560 0.99071 0.93930 0.86256 1.88090 1.72621 1.22388 1.44619 1.21240 1.00063 0.95218 0.83252 1.45982 1.59539 1.28108 1.05519 1.20294 0.78704 0.85471 0.83837 1.90698 1.38495 1.23938 1.86237 1.23530 1.04752 1.03471 0.98636 1.85396 1.72859 1.33006 0.92218 1.22919 1.41345 1.11241 0.92788 0.90876 1.24990 0.94878 0.95790 0.97933 1.70031 1.37640 1.24599 1.18049 0.86116 0.78570 0.80145 0.80660 1.19619 1.20569 1.20592 0.92102 0.92633 0.92399 0.94917 0.90472 0.84226 0.93817 0.90039 0.90936 0.90766 0.91911 0.91440 0.91036 0.91008 0.93492 0.88880 0.91757 0.91570 0.76821 0.89280 0.89225 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.84 37.16 0.33 -0.83 16 2 C -0.10 -0.87 2.63 -90.62 -0.24 -1.11 16 3 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.07 0.54 5.14 -3.83 -0.02 0.52 16 5 N -0.68 -5.32 6.37 -113.78 -0.72 -6.04 16 6 C 0.07 0.45 5.38 -3.82 -0.02 0.43 16 7 C 0.09 0.62 2.85 -26.68 -0.08 0.55 16 8 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 9 C -0.15 -0.80 5.42 -26.59 -0.14 -0.94 16 10 C -0.12 -0.57 6.03 -26.55 -0.16 -0.73 16 11 C -0.16 -0.79 6.14 -26.59 -0.16 -0.96 16 12 C 0.06 0.37 6.84 37.21 0.25 0.62 16 13 O -0.36 -3.14 10.27 -35.23 -0.36 -3.51 16 14 C 0.13 1.50 5.06 -4.04 -0.02 1.48 16 15 N -0.74 -10.03 5.28 -60.29 -0.32 -10.35 16 16 C 0.53 10.12 7.85 -10.99 -0.09 10.04 16 17 O -0.52 -12.07 15.86 5.56 0.09 -11.98 16 18 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 19 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 20 C -0.53 -15.39 9.50 30.94 0.29 -15.10 16 21 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 24 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H 0.06 0.48 7.18 -51.93 -0.37 0.11 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.38 6.68 -51.93 -0.35 0.03 16 31 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.34 2.36 6.98 -39.29 -0.27 2.09 16 34 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.40 4.30 7.65 -40.82 -0.31 3.99 16 47 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 48 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 49 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 405.09 15.07 6.10 6.10 Total: -1.00 -34.96 405.09 -10.52 -45.48 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -8.88 Total: 0.24 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 0.07 Total: -6.95 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -0.31 Total: -42.04 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.27 Total: -15.48 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.96 -10.52 -45.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.447 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds