Wall clock time and date at job start Sat Apr 11 2020 02:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47024 * 119.99412 * 2 1 3 5 5 N 1.46898 * 109.47390 * 295.00117 * 4 2 1 6 6 C 1.46898 * 110.99934 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47127 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.48068 * 59.98266 * 7 6 5 9 9 C 1.53099 * 109.48210 * 180.02562 * 7 6 5 10 10 C 1.53180 * 109.16212 * 177.59717 * 9 7 6 11 11 C 1.53179 * 109.03371 * 303.01555 * 10 9 7 12 12 C 1.53100 * 109.16036 * 56.98761 * 11 10 9 13 13 O 1.42900 * 109.41401 * 302.38416 * 12 11 10 14 14 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 15 15 N 1.46505 * 109.47212 * 64.99775 * 14 2 1 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00597 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99622 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.47156 * 180.02562 * 18 16 15 20 20 C 1.76204 * 100.00151 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99845 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00054 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00100 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99948 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47220 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47248 * 120.00156 * 24 22 20 27 27 H 1.48501 * 109.47068 * 240.00173 * 24 22 20 28 28 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 29 29 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 31 31 H 1.09003 * 109.46810 * 55.00222 * 4 2 1 32 32 H 1.08998 * 109.47247 * 175.00091 * 4 2 1 33 33 H 1.00902 * 110.99797 * 56.04735 * 5 4 2 34 34 H 1.08999 * 109.47340 * 300.00296 * 6 5 4 35 35 H 1.09001 * 109.47031 * 60.00413 * 6 5 4 36 36 H 1.09002 * 109.51845 * 297.50293 * 9 7 6 37 37 H 1.08998 * 109.52167 * 57.68708 * 9 7 6 38 38 H 1.08991 * 109.54589 * 62.88737 * 10 9 7 39 39 H 1.08997 * 109.53848 * 183.07058 * 10 9 7 40 40 H 1.08999 * 109.51938 * 176.88682 * 11 10 9 41 41 H 1.08997 * 109.52495 * 297.01684 * 11 10 9 42 42 H 1.08994 * 109.48180 * 62.37251 * 12 11 10 43 43 H 1.09002 * 109.47923 * 182.40901 * 12 11 10 44 44 H 1.09002 * 109.47153 * 304.99767 * 14 2 1 45 45 H 1.09001 * 109.46832 * 184.99958 * 14 2 1 46 46 H 0.96996 * 119.99606 * 0.02562 * 15 14 2 47 47 H 1.09001 * 109.47380 * 300.00190 * 18 16 15 48 48 H 1.09002 * 109.47060 * 60.00278 * 18 16 15 49 49 H 0.96999 * 120.00126 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6514 0.0376 2.4456 6 6 2.1247 -0.6269 3.6672 7 6 1.7024 0.1913 4.8892 8 1 0.6156 0.2700 4.9160 9 6 2.1962 -0.5007 6.1625 10 6 1.8220 0.3545 7.3770 11 6 2.4212 1.7539 7.2062 12 6 1.9186 2.3588 5.8926 13 8 2.2728 1.4990 4.8076 14 6 2.0401 -0.7213 -1.2492 15 7 1.6525 0.0353 -2.4424 16 6 1.9965 -0.4132 -3.6658 17 8 2.6266 -1.4433 -3.7791 18 6 1.5973 0.3647 -4.8932 19 16 2.2008 -0.4885 -6.3711 20 6 1.6114 0.6069 -7.6190 21 1 1.0586 1.4927 -7.3429 22 6 1.8567 0.3310 -8.9570 23 7 2.5292 -0.7493 -9.2937 24 14 1.2312 1.4919 -10.2800 25 1 0.5086 2.6231 -9.6447 26 1 2.3795 2.0148 -11.0630 27 1 0.3076 0.7605 -11.1840 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6054 -1.7197 1.2952 32 1 3.1263 -0.7993 1.2057 33 1 0.6528 0.1794 2.4753 34 1 1.6904 -1.6246 3.7297 35 1 3.2116 -0.7048 3.6406 36 1 1.7279 -1.4812 6.2491 37 1 3.2792 -0.6160 6.1178 38 1 0.7371 0.4288 7.4503 39 1 2.2182 -0.1051 8.2824 40 1 2.1137 2.3859 8.0393 41 1 3.5087 1.6843 7.1837 42 1 0.8347 2.4657 5.9329 43 1 2.3754 3.3374 5.7449 44 1 1.6055 -1.7198 -1.2951 45 1 3.1264 -0.7994 -1.2055 46 1 1.1489 0.8593 -2.3517 47 1 0.5109 0.4421 -4.9370 48 1 2.0312 1.3636 -4.8474 49 1 2.7009 -0.9420 -10.2287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753617196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:38:57 Heat of formation + Delta-G solvation = -132.970879 kcal Electronic energy + Delta-G solvation = -25021.139436 eV Core-core repulsion = 21300.245566 eV Total energy + Delta-G solvation = -3720.893870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.70190 -40.34717 -38.42676 -36.13079 -34.58152 -34.48843 -33.92933 -31.97035 -30.70407 -27.97200 -27.75425 -27.20698 -25.38177 -24.34175 -22.74410 -21.79366 -21.30998 -20.96057 -19.78918 -17.89394 -17.65285 -17.33836 -16.96661 -16.87656 -16.73841 -16.27392 -16.00139 -15.75987 -15.51174 -15.35025 -15.11278 -14.72737 -14.56673 -14.28796 -14.13272 -13.95831 -13.55712 -13.45463 -13.30873 -13.15507 -13.12752 -12.91571 -12.86116 -12.60347 -12.16965 -12.08374 -11.94732 -11.84492 -11.74255 -11.69773 -11.52011 -11.15332 -11.14204 -10.93846 -10.29181 -10.26671 -10.10171 -9.31520 -8.66253 -8.34281 -6.12393 1.27837 1.42037 1.47880 1.59176 1.62514 2.26186 2.30369 2.88959 3.00029 3.13584 3.33629 3.82532 3.87061 3.91684 3.94737 3.98278 4.01528 4.06074 4.10195 4.25960 4.30437 4.32427 4.49778 4.51780 4.54003 4.54865 4.61408 4.71961 4.75655 4.79927 4.81100 4.89236 4.96902 4.98979 5.02758 5.07723 5.14276 5.21479 5.26860 5.37152 5.39634 5.42763 5.48811 6.02909 6.20687 6.39927 6.50953 6.53958 7.07175 7.25626 8.75302 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.037715 B = 0.001477 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.234483 B =18951.273356 C =19329.852578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 H 0.088 0.912 4 C 0.071 3.929 5 N -0.686 5.686 6 C 0.066 3.934 7 C 0.094 3.906 8 H 0.060 0.940 9 C -0.149 4.149 10 C -0.122 4.122 11 C -0.156 4.156 12 C 0.054 3.946 13 O -0.387 6.387 14 C 0.127 3.873 15 N -0.710 5.710 16 C 0.532 3.468 17 O -0.568 6.568 18 C -0.129 4.129 19 S -0.153 6.153 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.345 0.655 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.094 0.906 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.415 0.585 47 H 0.110 0.890 48 H 0.109 0.891 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.415 5.446 36.419 37.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.105 4.105 3 H 0.106 0.894 4 C -0.059 4.059 5 N -0.319 5.319 6 C -0.063 4.063 7 C 0.036 3.964 8 H 0.078 0.922 9 C -0.187 4.187 10 C -0.159 4.159 11 C -0.193 4.193 12 C -0.023 4.023 13 O -0.306 6.306 14 C 0.002 3.998 15 N -0.364 5.364 16 C 0.318 3.682 17 O -0.447 6.447 18 C -0.281 4.281 19 S 0.074 5.926 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.199 1.199 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.165 0.835 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.112 0.888 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.253 0.747 47 H 0.129 0.871 48 H 0.128 0.872 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.651 4.116 35.956 36.488 hybrid contribution -1.602 0.956 -0.584 1.955 sum -6.253 5.072 35.371 36.276 Atomic orbital electron populations 1.21878 0.93685 1.02224 1.02796 1.21213 0.97048 1.00548 0.91726 0.89386 1.21804 1.00589 0.94616 0.88871 1.60338 1.20132 1.50386 1.01026 1.22003 1.01160 0.94882 0.88279 1.22144 0.96745 0.83400 0.94152 0.92184 1.22176 1.02076 0.99897 0.94600 1.21588 1.01166 0.95147 0.98029 1.22188 1.01214 0.97480 0.98449 1.22683 0.99563 0.93791 0.86249 1.88043 1.73264 1.23428 1.45848 1.21366 0.99575 0.95242 0.83569 1.45733 1.57964 1.28365 1.04326 1.20075 0.78474 0.84736 0.84909 1.90687 1.40997 1.26012 1.86960 1.23375 1.05752 1.03328 0.95613 1.85582 1.74341 1.35865 0.96792 1.23249 1.41447 1.11398 0.93299 0.89879 1.26129 0.94796 0.97559 1.00634 1.70192 1.39070 1.26785 1.18780 0.84894 0.78092 0.77868 0.77016 1.18009 1.19940 1.19912 0.92114 0.92726 0.90869 0.94370 0.91379 0.83533 0.92423 0.91268 0.89710 0.91675 0.91275 0.90683 0.89690 0.91936 0.92799 0.88764 0.92366 0.92633 0.74734 0.87133 0.87244 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.84 71.98 0.64 -1.28 16 2 C -0.09 -1.34 2.63 -10.79 -0.03 -1.37 16 3 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 4 C 0.07 1.05 5.14 86.30 0.44 1.50 16 5 N -0.69 -9.73 6.37 -513.90 -3.27 -13.00 16 6 C 0.07 0.84 5.38 86.30 0.46 1.30 16 7 C 0.09 1.13 2.85 30.63 0.09 1.21 16 8 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 9 C -0.15 -1.38 5.42 30.69 0.17 -1.22 16 10 C -0.12 -0.95 6.03 30.71 0.19 -0.76 16 11 C -0.16 -1.37 6.14 30.69 0.19 -1.19 16 12 C 0.05 0.62 6.84 72.02 0.49 1.11 16 13 O -0.39 -6.47 10.27 -148.98 -1.53 -8.00 16 14 C 0.13 2.87 5.06 86.38 0.44 3.31 16 15 N -0.71 -18.22 5.28 -463.06 -2.45 -20.67 16 16 C 0.53 20.02 7.85 87.66 0.69 20.71 16 17 O -0.57 -26.93 15.86 -3.03 -0.05 -26.97 16 18 C -0.13 -5.19 6.16 71.24 0.44 -4.76 16 19 S -0.15 -8.60 20.57 -56.49 -1.16 -9.77 16 20 C -0.55 -31.46 9.50 67.95 0.65 -30.81 16 21 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 22 C 0.01 0.77 5.49 84.86 0.47 1.24 16 23 N -0.91 -56.42 13.22 21.65 0.29 -56.13 16 24 Si 1.00 43.86 29.55 68.60 2.03 45.88 16 25 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 28 H 0.06 0.80 7.18 -2.39 -0.02 0.78 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.75 6.68 -2.39 -0.02 0.74 16 31 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.35 4.08 6.98 -89.69 -0.63 3.46 16 34 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 42 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.42 7.87 7.65 -92.71 -0.71 7.16 16 47 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 48 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 49 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -77.41 405.09 -1.25 -78.65 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -0.41 Total: 21.00 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 5.31 Total: -11.00 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -5.43 Total: -89.80 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -1.58 Total: -34.98 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.77 kcal Total: -77.41 -1.25 -78.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.317 kcal (2) G-P(sol) polarization free energy of solvation -77.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds