Wall clock time and date at job start Sat Apr 11 2020 02:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00276 * 2 1 4 4 H 1.48498 * 109.47063 * 89.99754 * 3 2 1 5 5 H 1.48501 * 109.47559 * 210.00107 * 3 2 1 6 6 H 1.48507 * 109.46967 * 330.00304 * 3 2 1 7 7 C 1.38814 * 119.99871 * 180.27450 * 2 1 3 8 8 H 1.08003 * 120.00182 * 323.54319 * 7 2 1 9 9 N 1.36941 * 120.00063 * 143.54173 * 7 2 1 10 10 C 1.46927 * 120.62907 * 332.21440 * 9 7 2 11 11 C 1.53182 * 108.77911 * 233.58658 * 10 9 7 12 12 C 1.53039 * 109.31231 * 305.36522 * 11 10 9 13 13 C 1.53044 * 109.53924 * 61.36295 * 12 11 10 14 14 H 1.09006 * 109.49474 * 58.62315 * 13 12 11 15 15 N 1.46498 * 109.50093 * 178.68054 * 13 12 11 16 16 C 1.34771 * 120.00231 * 204.99814 * 15 13 12 17 17 O 1.21277 * 120.00115 * 0.02562 * 16 15 13 18 18 C 1.50699 * 119.99986 * 180.02562 * 16 15 13 19 19 H 1.09008 * 109.63487 * 59.60216 * 18 16 15 20 20 C 1.53319 * 109.63735 * 180.02562 * 18 16 15 21 21 C 1.52806 * 108.52748 * 189.47822 * 20 18 16 22 22 C 1.50440 * 110.45882 * 309.00177 * 21 20 18 23 23 N 1.32887 * 118.53653 * 197.64059 * 22 21 20 24 24 C 1.31610 * 121.06345 * 180.25479 * 23 22 21 25 25 N 1.31821 * 121.67019 * 0.03312 * 24 23 22 26 26 C 1.32185 * 120.63882 * 359.86292 * 25 24 23 27 27 C 1.37773 * 122.57927 * 17.70728 * 22 21 20 28 28 C 1.50341 * 122.80324 * 359.31173 * 27 22 21 29 29 C 1.46917 * 120.63376 * 151.93492 * 9 7 2 30 30 H 0.97007 * 119.99847 * 174.87400 * 1 2 3 31 31 H 1.09002 * 109.58809 * 353.37284 * 10 9 7 32 32 H 1.09003 * 109.58612 * 113.79284 * 10 9 7 33 33 H 1.08998 * 109.50048 * 65.31452 * 11 10 9 34 34 H 1.09001 * 109.50151 * 185.38275 * 11 10 9 35 35 H 1.09003 * 109.46191 * 181.38468 * 12 11 10 36 36 H 1.09001 * 109.46352 * 301.34627 * 12 11 10 37 37 H 0.97003 * 119.99325 * 25.00892 * 15 13 12 38 38 H 1.09005 * 109.62247 * 309.19030 * 20 18 16 39 39 H 1.08999 * 109.62104 * 69.57181 * 20 18 16 40 40 H 1.09000 * 109.30531 * 69.30928 * 21 20 18 41 41 H 1.09003 * 109.30319 * 188.90050 * 21 20 18 42 42 H 1.07992 * 119.16405 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.36246 * 179.97438 * 26 25 24 44 44 H 1.08996 * 109.31572 * 257.34755 * 28 27 22 45 45 H 1.09005 * 109.30499 * 137.93576 * 28 27 22 46 46 H 1.09000 * 109.59162 * 246.20750 * 29 9 7 47 47 H 1.09001 * 109.58538 * 6.63007 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4476 2.6526 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.6287 -2.0486 0.5460 9 7 3.1786 -1.3149 -0.7110 10 6 3.4192 -0.4840 -1.8986 11 6 3.7849 -1.3967 -3.0733 12 6 4.9675 -2.2832 -2.6763 13 6 4.5723 -3.1615 -1.4869 14 1 3.7101 -3.7718 -1.7559 15 7 5.6945 -4.0320 -1.1276 16 6 5.4660 -5.1985 -0.4924 17 8 4.3313 -5.5277 -0.2185 18 6 6.6204 -6.0937 -0.1224 19 1 7.3015 -5.5585 0.5394 20 6 6.0937 -7.3480 0.5848 21 6 7.2829 -8.1185 1.1566 22 6 8.3298 -8.3314 0.0974 23 7 9.2528 -9.2666 0.2961 24 6 10.1947 -9.4913 -0.5953 25 7 10.2643 -8.8028 -1.7172 26 6 9.3790 -7.8581 -1.9839 27 6 8.3683 -7.5950 -1.0663 28 6 7.3612 -6.5259 -1.3873 29 6 4.2179 -2.2646 -0.2910 30 1 -0.4850 -0.8368 -0.0751 31 1 2.5173 0.0785 -2.1400 32 1 4.2404 0.2053 -1.7020 33 1 2.9298 -2.0232 -3.3271 34 1 4.0588 -0.7884 -3.9352 35 1 5.2455 -2.9165 -3.5188 36 1 5.8146 -1.6559 -2.3988 37 1 6.6020 -3.7688 -1.3469 38 1 5.4225 -7.0578 1.3932 39 1 5.5578 -7.9731 -0.1295 40 1 7.7152 -7.5533 1.9822 41 1 6.9423 -9.0872 1.5224 42 1 10.9292 -10.2591 -0.4026 43 1 9.4405 -7.2965 -2.9043 44 1 6.6436 -6.9123 -2.1110 45 1 7.8738 -5.6651 -1.8167 46 1 5.1030 -1.7177 0.0340 47 1 3.8431 -2.8775 0.5287 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007482521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:38:02 Heat of formation + Delta-G solvation = 20.248933 kcal Electronic energy + Delta-G solvation = -28207.612252 eV Core-core repulsion = 24390.211291 eV Total energy + Delta-G solvation = -3817.400961 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.75826 -40.03066 -37.91630 -36.74812 -34.57460 -34.36556 -32.62254 -31.80169 -30.86925 -30.78463 -28.90431 -25.70372 -25.01801 -24.64284 -23.40718 -22.70197 -21.76087 -21.04885 -20.01026 -19.47661 -18.15167 -17.34792 -17.27002 -17.00547 -16.03210 -15.64239 -15.36141 -14.88546 -14.66038 -14.33862 -14.22123 -14.17330 -14.02302 -13.72465 -13.63705 -13.45444 -13.21606 -12.82695 -12.57359 -12.36968 -12.14344 -12.02902 -11.58843 -11.50977 -11.29439 -11.17185 -11.05908 -10.75186 -10.65044 -10.63202 -10.17249 -9.99284 -9.65371 -9.61677 -9.60402 -9.54193 -9.25397 -8.96242 -8.23295 -6.99680 -6.35360 -3.23749 0.50200 0.65663 2.67501 3.18166 3.35104 3.50196 3.57048 3.61997 3.70750 3.81072 4.03170 4.14227 4.22814 4.44327 4.63567 4.66135 4.85418 4.89082 4.99616 5.02224 5.04526 5.13728 5.18329 5.20481 5.28041 5.39127 5.44156 5.48789 5.51076 5.64766 5.79119 5.83602 5.92930 5.94651 6.02826 6.05846 6.25717 6.32621 6.44107 6.50949 6.59548 6.62446 6.77177 6.79814 6.97721 7.60568 7.70085 8.09904 8.32628 8.47119 9.05350 9.65380 10.24411 11.04968 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.026419 B = 0.002458 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.608333 B =11390.338697 C =11960.643320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.004 3.996 3 Si 1.015 2.985 4 H -0.298 1.298 5 H -0.270 1.270 6 H -0.294 1.294 7 C -0.361 4.361 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.139 3.861 11 C -0.136 4.136 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.088 0.912 15 N -0.723 5.723 16 C 0.515 3.485 17 O -0.529 6.529 18 C -0.109 4.109 19 H 0.102 0.898 20 C -0.100 4.100 21 C -0.074 4.074 22 C 0.183 3.817 23 N -0.521 5.521 24 C 0.289 3.711 25 N -0.523 5.523 26 C 0.151 3.849 27 C -0.178 4.178 28 C -0.063 4.063 29 C 0.141 3.859 30 H 0.268 0.732 31 H 0.067 0.933 32 H 0.030 0.970 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.394 0.606 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.195 0.805 43 H 0.169 0.831 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.018 0.982 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.995 -14.662 -4.633 26.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.200 4.200 3 Si 0.845 3.155 4 H -0.226 1.226 5 H -0.196 1.196 6 H -0.220 1.220 7 C -0.489 4.489 8 H 0.082 0.918 9 N -0.319 5.319 10 C 0.014 3.986 11 C -0.176 4.176 12 C -0.153 4.153 13 C 0.019 3.981 14 H 0.106 0.894 15 N -0.373 5.373 16 C 0.300 3.700 17 O -0.404 6.404 18 C -0.130 4.130 19 H 0.120 0.880 20 C -0.139 4.139 21 C -0.112 4.112 22 C 0.039 3.961 23 N -0.235 5.235 24 C 0.001 3.999 25 N -0.237 5.237 26 C -0.016 4.016 27 C -0.182 4.182 28 C -0.101 4.101 29 C 0.014 3.986 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.227 0.773 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.212 0.788 43 H 0.186 0.814 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.036 0.964 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 20.599 -13.994 -4.152 25.246 hybrid contribution 0.249 -0.864 -0.322 0.955 sum 20.848 -14.859 -4.473 25.989 Atomic orbital electron populations 1.70878 1.06995 1.29838 1.45681 1.26127 0.95925 1.00720 0.97264 0.84658 0.76571 0.77414 0.76908 1.22633 1.19586 1.22038 1.20058 0.98255 0.98094 1.32490 0.91764 1.44290 1.16753 1.43712 1.27113 1.21428 0.99187 0.92302 0.85719 1.22073 0.97394 0.98894 0.99195 1.21664 0.99035 0.97889 0.96684 1.21809 0.88510 0.91210 0.96522 0.89428 1.46155 1.10574 1.20657 1.59939 1.20347 0.90211 0.81592 0.77850 1.90761 1.23424 1.73443 1.52821 1.21387 0.96544 0.96953 0.98150 0.88010 1.21434 0.96473 0.94533 1.01412 1.20505 0.92640 1.02619 0.95421 1.21433 0.92879 0.88588 0.93213 1.68419 1.04164 1.17866 1.33068 1.24917 0.94088 0.95919 0.85017 1.68426 1.26627 1.07399 1.21230 1.23298 0.88171 0.92124 0.98008 1.21111 0.99630 1.00698 0.96793 1.20290 0.96011 0.96388 0.97444 1.21319 0.91727 0.91370 0.94207 0.92240 0.91447 0.95191 0.91815 0.92327 0.92692 0.92160 0.77276 0.89058 0.90622 0.88808 0.88625 0.78822 0.81405 0.89228 0.89458 0.96392 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.70 55.49 0.76 -26.80 16 2 C 0.00 0.11 4.82 -17.43 -0.08 0.03 16 3 Si 1.02 25.00 26.99 -169.99 -4.59 20.42 16 4 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 5 H -0.27 -6.02 4.73 56.52 0.27 -5.75 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.36 -10.22 9.70 -15.06 -0.15 -10.37 16 8 H 0.06 1.99 8.06 -52.48 -0.42 1.57 16 9 N -0.59 -14.18 2.71 -172.06 -0.47 -14.64 16 10 C 0.14 2.93 4.36 -3.72 -0.02 2.91 16 11 C -0.14 -2.26 6.08 -26.62 -0.16 -2.42 16 12 C -0.11 -1.60 5.35 -26.69 -0.14 -1.74 16 13 C 0.12 2.02 2.62 -67.58 -0.18 1.85 16 14 H 0.09 1.71 7.58 -51.93 -0.39 1.31 16 15 N -0.72 -8.71 4.99 -53.47 -0.27 -8.97 16 16 C 0.52 6.65 7.10 -10.99 -0.08 6.57 16 17 O -0.53 -9.49 15.51 5.56 0.09 -9.41 16 18 C -0.11 -0.94 2.55 -91.69 -0.23 -1.18 16 19 H 0.10 0.75 8.10 -51.92 -0.42 0.33 16 20 C -0.10 -0.90 4.70 -26.67 -0.13 -1.03 16 21 C -0.07 -0.58 5.96 -28.11 -0.17 -0.74 16 22 C 0.18 1.65 6.62 -82.43 -0.55 1.10 16 23 N -0.52 -5.10 10.32 -11.00 -0.11 -5.21 16 24 C 0.29 2.50 12.29 -92.29 -1.13 1.37 16 25 N -0.52 -4.80 10.44 -14.54 -0.15 -4.95 16 26 C 0.15 1.16 10.94 -17.11 -0.19 0.97 16 27 C -0.18 -1.40 5.73 -104.68 -0.60 -2.00 16 28 C -0.06 -0.43 4.89 -28.14 -0.14 -0.56 16 29 C 0.14 2.86 6.12 -3.49 -0.02 2.84 16 30 H 0.27 8.20 8.73 -40.82 -0.36 7.85 16 31 H 0.07 1.55 5.81 -51.93 -0.30 1.25 16 32 H 0.03 0.61 6.60 -51.93 -0.34 0.27 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.39 3.36 8.29 -40.82 -0.34 3.02 16 38 H 0.09 0.93 7.82 -51.93 -0.41 0.52 16 39 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.20 1.08 8.06 -52.49 -0.42 0.65 16 43 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 44 H 0.09 0.65 8.11 -51.93 -0.42 0.23 16 45 H 0.09 0.41 7.88 -51.93 -0.41 0.00 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 1.39 7.93 -51.93 -0.41 0.97 16 LS Contribution 369.59 15.07 5.57 5.57 Total: -1.00 -34.73 369.59 -10.51 -45.24 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.38 Total: 1.18 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -3.96 Total: -2.42 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.24 Total: -60.58 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -4.59 Total: 20.42 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.73 -10.51 -45.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007482521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.486 kcal (2) G-P(sol) polarization free energy of solvation -34.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds