Wall clock time and date at job start Sat Apr 11 2020 02:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00065 * 2 1 4 4 H 1.48503 * 109.46962 * 240.00336 * 3 2 1 5 5 H 1.48500 * 109.46934 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47497 * 119.99726 * 3 2 1 7 7 C 1.38817 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99713 * 158.78711 * 7 2 1 9 9 N 1.36935 * 119.99877 * 338.78747 * 7 2 1 10 10 C 1.43436 * 120.53938 * 156.46100 * 9 7 2 11 11 C 1.54893 * 116.07780 * 271.59238 * 10 9 7 12 12 C 1.54842 * 110.14327 * 318.63365 * 11 10 9 13 13 C 1.50120 * 110.81346 * 321.13836 * 12 11 10 14 14 C 1.52524 * 105.42181 * 97.68073 * 13 12 11 15 15 H 1.09010 * 108.39811 * 31.74628 * 14 13 12 16 16 N 1.46499 * 108.52535 * 149.35179 * 14 13 12 17 17 C 1.34778 * 119.99985 * 209.71909 * 16 14 13 18 18 O 1.21285 * 119.99935 * 0.02562 * 17 16 14 19 19 C 1.50700 * 120.00071 * 179.97438 * 17 16 14 20 20 C 1.53001 * 109.46972 * 180.02562 * 19 17 16 21 21 H 1.08995 * 110.43590 * 307.53901 * 20 19 17 22 22 C 1.54266 * 110.48029 * 185.00128 * 20 19 17 23 23 C 1.53878 * 106.59808 * 217.71109 * 22 20 19 24 24 C 1.54266 * 106.59606 * 0.02562 * 23 22 20 25 25 F 1.39901 * 110.48265 * 142.28494 * 24 23 22 26 26 F 1.39889 * 110.48943 * 264.92842 * 24 23 22 27 27 C 1.54885 * 110.48471 * 70.23280 * 20 19 17 28 28 C 1.46243 * 114.27662 * 270.59863 * 14 13 12 29 29 H 0.96997 * 120.00500 * 0.02562 * 1 2 3 30 30 H 1.09003 * 108.15412 * 33.30672 * 10 9 7 31 31 H 1.08997 * 108.16171 * 149.87190 * 10 9 7 32 32 H 1.09005 * 109.36411 * 78.84826 * 11 10 9 33 33 H 1.09006 * 109.35791 * 198.43117 * 11 10 9 34 34 H 1.09002 * 109.20490 * 81.48336 * 12 11 10 35 35 H 1.08998 * 109.21088 * 200.78891 * 12 11 10 36 36 H 1.09001 * 110.25159 * 338.70669 * 13 12 11 37 37 H 1.09001 * 110.24703 * 216.65624 * 13 12 11 38 38 H 0.96996 * 119.99709 * 29.72331 * 16 14 13 39 39 H 1.09001 * 109.47189 * 300.00605 * 19 17 16 40 40 H 1.09005 * 109.46727 * 60.00524 * 19 17 16 41 41 H 1.08997 * 110.04051 * 336.99729 * 22 20 19 42 42 H 1.09008 * 110.03400 * 98.38226 * 22 20 19 43 43 H 1.09003 * 110.03360 * 119.28756 * 23 22 20 44 44 H 1.09000 * 110.03185 * 240.72021 * 23 22 20 45 45 H 1.09006 * 110.75219 * 274.93003 * 27 20 19 46 46 H 1.08996 * 110.76065 * 38.30300 * 27 20 19 47 47 H 1.09002 * 109.84217 * 177.91090 * 28 14 13 48 48 H 1.08995 * 109.83953 * 298.82223 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0354 -1.2339 -0.3379 9 7 1.3952 -2.3477 0.4301 10 6 1.8608 -3.6325 -0.0057 11 6 1.2452 -4.1692 -1.3218 12 6 -0.2746 -3.8753 -1.3583 13 6 -0.8880 -4.0680 -0.0018 14 6 -0.9668 -2.6728 0.6096 15 1 -1.1201 -1.9530 -0.1946 16 7 -2.1253 -2.6217 1.5049 17 6 -2.7774 -1.4581 1.6973 18 8 -2.4055 -0.4533 1.1289 19 6 -3.9695 -1.4056 2.6178 20 6 -4.5205 0.0212 2.6579 21 1 -3.7261 0.7294 2.8933 22 6 -5.6634 0.1297 3.6883 23 6 -6.7127 1.0783 3.0827 24 6 -6.1710 1.5126 1.7051 25 9 -7.2132 1.6053 0.7763 26 9 -5.4947 2.7329 1.8073 27 6 -5.1901 0.3817 1.3086 28 6 0.2220 -2.2793 1.3650 29 1 -0.4851 0.8400 -0.0004 30 1 2.9417 -3.5762 -0.1344 31 1 1.6554 -4.3544 0.7846 32 1 1.7276 -3.6844 -2.1706 33 1 1.4066 -5.2455 -1.3836 34 1 -0.4332 -2.8462 -1.6808 35 1 -0.7535 -4.5503 -2.0676 36 1 -0.2565 -4.7126 0.6097 37 1 -1.8862 -4.4954 -0.0963 38 1 -2.4228 -3.4254 1.9592 39 1 -4.7413 -2.0827 2.2518 40 1 -3.6674 -1.7072 3.6208 41 1 -6.1038 -0.8520 3.8623 42 1 -5.2844 0.5398 4.6245 43 1 -7.6624 0.5569 2.9626 44 1 -6.8431 1.9496 3.7246 45 1 -4.4502 0.7444 0.5950 46 1 -5.7308 -0.4742 0.9047 47 1 0.1039 -1.2615 1.7368 48 1 0.3726 -2.9631 2.2003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034240021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:38:03 Heat of formation + Delta-G solvation = -119.509788 kcal Electronic energy + Delta-G solvation = -30400.394863 eV Core-core repulsion = 26126.244323 eV Total energy + Delta-G solvation = -4274.150540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -48.79702 -46.93451 -39.51447 -38.03645 -36.80222 -33.94886 -33.08737 -31.36769 -30.65229 -29.56183 -28.58978 -26.19886 -25.53820 -24.13579 -22.73485 -21.16427 -20.61216 -19.86927 -19.61051 -18.71674 -17.51831 -16.83233 -16.58541 -16.36343 -15.78462 -15.38079 -15.03536 -14.82141 -14.42224 -14.16128 -14.00673 -13.74998 -13.65221 -13.28950 -13.26574 -13.21002 -12.75482 -12.39689 -12.26597 -12.19287 -11.82444 -11.75331 -11.66909 -11.34670 -11.26510 -11.18803 -11.03391 -10.65730 -10.62281 -10.60698 -10.50223 -10.17910 -10.10732 -9.76289 -9.71479 -9.50017 -9.35142 -8.82196 -8.40054 -8.05945 -6.58669 -5.56811 -3.00754 3.47516 3.49408 3.57138 3.58293 3.68561 3.87857 3.95307 4.19699 4.35740 4.65704 4.96072 4.99833 5.04808 5.15399 5.23762 5.36025 5.48891 5.54112 5.56204 5.60702 5.62494 5.63805 5.67495 5.75880 5.87530 5.88289 5.93929 6.14557 6.19629 6.25330 6.34838 6.35627 6.44282 6.55969 6.63828 6.89365 6.97946 7.02666 7.13949 7.21948 7.36718 7.66293 7.70882 7.98308 8.38683 8.57914 9.12428 9.36294 10.00282 10.52666 11.47741 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.003829 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.735253 B = 7310.208582 C = 8583.314831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.012 3.988 3 Si 0.888 3.112 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.279 4.279 8 H 0.064 0.936 9 N -0.580 5.580 10 C 0.158 3.842 11 C -0.144 4.144 12 C -0.105 4.105 13 C -0.122 4.122 14 C 0.128 3.872 15 H 0.129 0.871 16 N -0.737 5.737 17 C 0.488 3.512 18 O -0.484 6.484 19 C -0.133 4.133 20 C -0.073 4.073 21 H 0.095 0.905 22 C -0.119 4.119 23 C -0.159 4.159 24 C 0.274 3.726 25 F -0.203 7.203 26 F -0.194 7.194 27 C -0.149 4.149 28 C 0.160 3.840 29 H 0.263 0.737 30 H 0.031 0.969 31 H 0.025 0.975 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.035 0.965 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.380 0.620 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.107 0.893 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.491 -6.195 7.246 16.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.190 4.190 3 Si 0.718 3.282 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.409 4.409 8 H 0.082 0.918 9 N -0.302 5.302 10 C 0.029 3.971 11 C -0.186 4.186 12 C -0.143 4.143 13 C -0.160 4.160 14 C 0.025 3.975 15 H 0.147 0.853 16 N -0.389 5.389 17 C 0.271 3.729 18 O -0.356 6.356 19 C -0.174 4.174 20 C -0.091 4.091 21 H 0.114 0.886 22 C -0.156 4.156 23 C -0.198 4.198 24 C 0.238 3.762 25 F -0.184 7.184 26 F -0.175 7.175 27 C -0.187 4.187 28 C 0.035 3.965 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.212 0.788 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.126 0.874 46 H 0.110 0.890 47 H 0.112 0.888 48 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -13.331 -5.205 6.796 15.843 hybrid contribution 0.151 0.542 0.016 0.563 sum -13.180 -4.663 6.812 15.552 Atomic orbital electron populations 1.69829 1.03823 1.26429 1.49793 1.24977 0.95313 0.97817 1.00848 0.86629 0.79122 0.84719 0.77754 1.21306 1.21822 1.21444 1.18957 0.94333 0.85564 1.42006 0.91794 1.44016 1.35119 1.00953 1.50068 1.20403 0.96323 0.87923 0.92479 1.22908 0.95911 0.98048 1.01698 1.21280 0.95482 1.02040 0.95468 1.21347 0.99180 0.97526 0.97955 1.21147 0.84926 0.96477 0.94956 0.85310 1.46478 1.32899 1.10284 1.49240 1.20436 0.84390 0.84522 0.83531 1.90908 1.65238 1.32763 1.46648 1.21743 0.97542 0.97339 1.00750 1.21658 0.97248 0.97138 0.93104 0.88648 1.22203 0.95016 0.99448 0.98950 1.23100 1.00705 1.01746 0.94209 1.22038 0.82630 0.82641 0.88890 1.92979 1.59953 1.96743 1.68736 1.93016 1.80597 1.47332 1.96542 1.23514 0.98263 0.96782 1.00149 1.20402 0.85422 1.01002 0.89691 0.92621 0.95089 0.95702 0.93075 0.94034 0.90701 0.94600 0.92200 0.92989 0.78848 0.89659 0.89325 0.90553 0.90613 0.88858 0.89412 0.87443 0.88983 0.88834 0.98033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.02 7.84 55.49 0.43 -23.59 16 2 C 0.01 0.34 4.86 -17.43 -0.08 0.26 16 3 Si 0.89 22.23 29.60 -169.99 -5.03 17.20 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.28 -7.62 9.61 -15.06 -0.14 -7.76 16 8 H 0.06 1.76 7.90 -52.49 -0.41 1.34 16 9 N -0.58 -14.13 2.60 -175.08 -0.46 -14.58 16 10 C 0.16 3.28 5.17 -4.66 -0.02 3.26 16 11 C -0.14 -2.70 6.41 -24.76 -0.16 -2.85 16 12 C -0.10 -1.95 5.65 -27.19 -0.15 -2.11 16 13 C -0.12 -2.10 5.25 -28.41 -0.15 -2.24 16 14 C 0.13 2.57 1.84 -71.39 -0.13 2.44 16 15 H 0.13 3.21 4.55 -51.92 -0.24 2.97 16 16 N -0.74 -11.90 4.87 -57.21 -0.28 -12.18 16 17 C 0.49 8.19 7.56 -10.98 -0.08 8.11 16 18 O -0.48 -10.52 12.31 5.55 0.07 -10.45 16 19 C -0.13 -1.51 5.05 -27.88 -0.14 -1.65 16 20 C -0.07 -0.87 2.45 -88.96 -0.22 -1.08 16 21 H 0.10 1.39 7.90 -51.93 -0.41 0.98 16 22 C -0.12 -1.02 6.37 -25.61 -0.16 -1.19 16 23 C -0.16 -1.48 6.41 -25.61 -0.16 -1.64 16 24 C 0.27 3.53 2.49 -25.09 -0.06 3.47 16 25 F -0.20 -2.82 17.16 2.25 0.04 -2.78 16 26 F -0.19 -2.99 17.17 2.25 0.04 -2.95 16 27 C -0.15 -1.97 5.33 -24.75 -0.13 -2.10 16 28 C 0.16 3.65 4.67 -5.20 -0.02 3.62 16 29 H 0.26 7.61 8.08 -40.82 -0.33 7.28 16 30 H 0.03 0.65 7.99 -51.93 -0.41 0.23 16 31 H 0.02 0.47 6.89 -51.93 -0.36 0.12 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.69 6.82 -51.93 -0.35 1.33 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 1.00 6.29 -51.93 -0.33 0.67 16 37 H 0.05 0.78 8.04 -51.93 -0.42 0.36 16 38 H 0.38 4.73 8.61 -40.82 -0.35 4.38 16 39 H 0.09 0.77 8.02 -51.93 -0.42 0.36 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.52 7.84 -51.93 -0.41 0.11 16 42 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 43 H 0.09 0.72 8.11 -51.93 -0.42 0.29 16 44 H 0.09 0.75 8.12 -51.93 -0.42 0.33 16 45 H 0.11 1.78 7.29 -51.93 -0.38 1.40 16 46 H 0.09 1.07 7.96 -51.93 -0.41 0.66 16 47 H 0.09 2.49 6.06 -51.93 -0.31 2.18 16 48 H 0.00 0.03 8.13 -51.93 -0.42 -0.39 16 LS Contribution 367.29 15.07 5.53 5.53 Total: -1.00 -30.54 367.29 -9.20 -39.74 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.72 Total: 5.52 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.83 Total: -1.48 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.30 Total: -50.34 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.08 Total: -5.73 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.54 -9.20 -39.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034240021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.770 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds