Wall clock time and date at job start Sat Apr 11 2020 02:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00065 * 2 1 4 4 H 1.48503 * 109.46962 * 240.00336 * 3 2 1 5 5 H 1.48500 * 109.46934 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47497 * 119.99726 * 3 2 1 7 7 C 1.38817 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99713 * 158.78711 * 7 2 1 9 9 N 1.36935 * 119.99877 * 338.78747 * 7 2 1 10 10 C 1.43436 * 120.53938 * 156.46100 * 9 7 2 11 11 C 1.54893 * 116.07780 * 271.59238 * 10 9 7 12 12 C 1.54842 * 110.14327 * 318.63365 * 11 10 9 13 13 C 1.50120 * 110.81346 * 321.13836 * 12 11 10 14 14 C 1.52524 * 105.42181 * 97.68073 * 13 12 11 15 15 H 1.09010 * 108.39811 * 31.74628 * 14 13 12 16 16 N 1.46499 * 108.52535 * 149.35179 * 14 13 12 17 17 C 1.34778 * 119.99985 * 209.71909 * 16 14 13 18 18 O 1.21285 * 119.99935 * 0.02562 * 17 16 14 19 19 C 1.50700 * 120.00071 * 179.97438 * 17 16 14 20 20 C 1.53001 * 109.46972 * 180.02562 * 19 17 16 21 21 H 1.08995 * 110.43590 * 307.53901 * 20 19 17 22 22 C 1.54266 * 110.48029 * 185.00128 * 20 19 17 23 23 C 1.53878 * 106.59808 * 217.71109 * 22 20 19 24 24 C 1.54266 * 106.59606 * 0.02562 * 23 22 20 25 25 F 1.39901 * 110.48265 * 142.28494 * 24 23 22 26 26 F 1.39889 * 110.48943 * 264.92842 * 24 23 22 27 27 C 1.54885 * 110.48471 * 70.23280 * 20 19 17 28 28 C 1.46243 * 114.27662 * 270.59863 * 14 13 12 29 29 H 0.96997 * 120.00500 * 0.02562 * 1 2 3 30 30 H 1.09003 * 108.15412 * 33.30672 * 10 9 7 31 31 H 1.08997 * 108.16171 * 149.87190 * 10 9 7 32 32 H 1.09005 * 109.36411 * 78.84826 * 11 10 9 33 33 H 1.09006 * 109.35791 * 198.43117 * 11 10 9 34 34 H 1.09002 * 109.20490 * 81.48336 * 12 11 10 35 35 H 1.08998 * 109.21088 * 200.78891 * 12 11 10 36 36 H 1.09001 * 110.25159 * 338.70669 * 13 12 11 37 37 H 1.09001 * 110.24703 * 216.65624 * 13 12 11 38 38 H 0.96996 * 119.99709 * 29.72331 * 16 14 13 39 39 H 1.09001 * 109.47189 * 300.00605 * 19 17 16 40 40 H 1.09005 * 109.46727 * 60.00524 * 19 17 16 41 41 H 1.08997 * 110.04051 * 336.99729 * 22 20 19 42 42 H 1.09008 * 110.03400 * 98.38226 * 22 20 19 43 43 H 1.09003 * 110.03360 * 119.28756 * 23 22 20 44 44 H 1.09000 * 110.03185 * 240.72021 * 23 22 20 45 45 H 1.09006 * 110.75219 * 274.93003 * 27 20 19 46 46 H 1.08996 * 110.76065 * 38.30300 * 27 20 19 47 47 H 1.09002 * 109.84217 * 177.91090 * 28 14 13 48 48 H 1.08995 * 109.83953 * 298.82223 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0354 -1.2339 -0.3379 9 7 1.3952 -2.3477 0.4301 10 6 1.8608 -3.6325 -0.0057 11 6 1.2452 -4.1692 -1.3218 12 6 -0.2746 -3.8753 -1.3583 13 6 -0.8880 -4.0680 -0.0018 14 6 -0.9668 -2.6728 0.6096 15 1 -1.1201 -1.9530 -0.1946 16 7 -2.1253 -2.6217 1.5049 17 6 -2.7774 -1.4581 1.6973 18 8 -2.4055 -0.4533 1.1289 19 6 -3.9695 -1.4056 2.6178 20 6 -4.5205 0.0212 2.6579 21 1 -3.7261 0.7294 2.8933 22 6 -5.6634 0.1297 3.6883 23 6 -6.7127 1.0783 3.0827 24 6 -6.1710 1.5126 1.7051 25 9 -7.2132 1.6053 0.7763 26 9 -5.4947 2.7329 1.8073 27 6 -5.1901 0.3817 1.3086 28 6 0.2220 -2.2793 1.3650 29 1 -0.4851 0.8400 -0.0004 30 1 2.9417 -3.5762 -0.1344 31 1 1.6554 -4.3544 0.7846 32 1 1.7276 -3.6844 -2.1706 33 1 1.4066 -5.2455 -1.3836 34 1 -0.4332 -2.8462 -1.6808 35 1 -0.7535 -4.5503 -2.0676 36 1 -0.2565 -4.7126 0.6097 37 1 -1.8862 -4.4954 -0.0963 38 1 -2.4228 -3.4254 1.9592 39 1 -4.7413 -2.0827 2.2518 40 1 -3.6674 -1.7072 3.6208 41 1 -6.1038 -0.8520 3.8623 42 1 -5.2844 0.5398 4.6245 43 1 -7.6624 0.5569 2.9626 44 1 -6.8431 1.9496 3.7246 45 1 -4.4502 0.7444 0.5950 46 1 -5.7308 -0.4742 0.9047 47 1 0.1039 -1.2615 1.7368 48 1 0.3726 -2.9631 2.2003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034240021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:38:02 Heat of formation + Delta-G solvation = -137.713531 kcal Electronic energy + Delta-G solvation = -30401.184237 eV Core-core repulsion = 26126.244323 eV Total energy + Delta-G solvation = -4274.939914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.88407 -48.04555 -40.88299 -39.38258 -38.00032 -35.61749 -34.76960 -32.68207 -32.34362 -30.93133 -29.53211 -27.94854 -26.67852 -25.77477 -24.43203 -22.22618 -21.81192 -21.28019 -20.86617 -20.25997 -18.61072 -18.51205 -17.88211 -17.52783 -16.89854 -16.88362 -16.66876 -16.05473 -15.97887 -15.52335 -15.32913 -15.13284 -14.90263 -14.83484 -14.45370 -14.38008 -14.02908 -13.91647 -13.67572 -13.46733 -13.32492 -13.15895 -13.00749 -12.64055 -12.62739 -12.53344 -12.43380 -12.20989 -12.06937 -12.00102 -11.83912 -11.58509 -11.47039 -11.40757 -11.23752 -11.15644 -11.06940 -10.41569 -10.17780 -9.61838 -8.52480 -7.66989 -5.11327 1.42841 1.46155 1.51849 2.20705 2.54300 2.64199 2.79667 2.99948 3.28049 3.39964 3.44764 3.77771 4.04916 4.07764 4.12546 4.17006 4.25524 4.30242 4.32233 4.37694 4.46287 4.64349 4.70369 4.74249 4.77785 4.78073 4.84597 4.89135 4.95032 4.96517 4.98453 5.07853 5.08030 5.29288 5.31200 5.40685 5.43127 5.46386 5.50697 5.67381 5.72576 5.80874 6.07824 6.09620 6.49307 7.08376 7.27892 7.92704 8.00505 8.49492 9.29772 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.003829 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.735253 B = 7310.208582 C = 8583.314831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C -0.032 4.032 3 Si 0.935 3.065 4 H -0.281 1.281 5 H -0.306 1.306 6 H -0.285 1.285 7 C -0.286 4.286 8 H 0.056 0.944 9 N -0.597 5.597 10 C 0.151 3.849 11 C -0.137 4.137 12 C -0.101 4.101 13 C -0.109 4.109 14 C 0.139 3.861 15 H 0.078 0.922 16 N -0.726 5.726 17 C 0.475 3.525 18 O -0.542 6.542 19 C -0.117 4.117 20 C -0.073 4.073 21 H 0.055 0.945 22 C -0.106 4.106 23 C -0.149 4.149 24 C 0.259 3.741 25 F -0.211 7.211 26 F -0.216 7.216 27 C -0.149 4.149 28 C 0.168 3.832 29 H 0.245 0.755 30 H 0.024 0.976 31 H 0.050 0.950 32 H 0.031 0.969 33 H 0.081 0.919 34 H 0.024 0.976 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.404 0.596 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.119 0.881 44 H 0.095 0.905 45 H 0.058 0.942 46 H 0.111 0.889 47 H 0.047 0.953 48 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.306 -9.590 9.138 20.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.233 4.233 3 Si 0.766 3.234 4 H -0.207 1.207 5 H -0.233 1.233 6 H -0.211 1.211 7 C -0.416 4.416 8 H 0.074 0.926 9 N -0.319 5.319 10 C 0.023 3.977 11 C -0.178 4.178 12 C -0.139 4.139 13 C -0.146 4.146 14 C 0.034 3.966 15 H 0.096 0.904 16 N -0.380 5.380 17 C 0.261 3.739 18 O -0.418 6.418 19 C -0.157 4.157 20 C -0.092 4.092 21 H 0.074 0.926 22 C -0.144 4.144 23 C -0.187 4.187 24 C 0.223 3.777 25 F -0.192 7.192 26 F -0.198 7.198 27 C -0.187 4.187 28 C 0.044 3.956 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.239 0.761 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.104 0.896 43 H 0.137 0.863 44 H 0.114 0.886 45 H 0.077 0.923 46 H 0.130 0.870 47 H 0.066 0.934 48 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -15.149 -8.658 8.708 19.501 hybrid contribution 0.782 1.587 -0.622 1.875 sum -14.367 -7.071 8.086 17.939 Atomic orbital electron populations 1.70063 1.04261 1.25188 1.50590 1.25526 0.96007 0.99926 1.01803 0.85859 0.77856 0.81900 0.77816 1.20730 1.23289 1.21148 1.19083 0.94150 0.87022 1.41378 0.92613 1.44152 1.35706 1.01415 1.50673 1.20559 0.95981 0.86841 0.94342 1.22821 0.95510 1.00054 0.99406 1.21214 0.95922 0.99635 0.97158 1.21264 1.01109 0.95636 0.96637 1.20569 0.85092 0.97160 0.93813 0.90415 1.46263 1.31680 1.11401 1.48694 1.21518 0.85397 0.83592 0.83357 1.90911 1.67081 1.34821 1.48976 1.21729 0.95619 0.97569 1.00795 1.21596 0.97456 0.96742 0.93385 0.92610 1.22195 0.93174 1.01247 0.97738 1.23137 1.01794 1.02475 0.91311 1.22555 0.82520 0.81543 0.91037 1.92956 1.60092 1.96711 1.69451 1.92968 1.81265 1.48823 1.96717 1.23467 0.97545 0.97548 1.00158 1.20258 0.86350 0.98807 0.90232 0.94548 0.95794 0.93208 0.95051 0.90090 0.95706 0.91837 0.90548 0.89970 0.76075 0.85908 0.86258 0.86989 0.89556 0.86270 0.88637 0.92327 0.87047 0.93413 0.96208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -51.32 7.84 21.65 0.17 -51.15 16 2 C -0.03 -1.86 4.86 84.86 0.41 -1.45 16 3 Si 0.94 47.89 29.60 68.60 2.03 49.92 16 4 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 5 H -0.31 -16.22 7.11 99.48 0.71 -15.52 16 6 H -0.28 -14.31 7.11 99.48 0.71 -13.61 16 7 C -0.29 -16.13 9.61 84.04 0.81 -15.32 16 8 H 0.06 3.16 7.90 -2.91 -0.02 3.14 16 9 N -0.60 -29.45 2.60 -707.84 -1.84 -31.29 16 10 C 0.15 6.07 5.17 87.59 0.45 6.52 16 11 C -0.14 -4.87 6.41 31.87 0.20 -4.66 16 12 C -0.10 -3.63 5.65 30.30 0.17 -3.46 16 13 C -0.11 -3.43 5.25 29.51 0.15 -3.27 16 14 C 0.14 5.54 1.84 42.75 0.08 5.62 16 15 H 0.08 4.05 4.55 -2.38 -0.01 4.04 16 16 N -0.73 -22.46 4.87 -453.29 -2.21 -24.66 16 17 C 0.48 15.94 7.56 87.66 0.66 16.60 16 18 O -0.54 -25.19 12.31 -3.05 -0.04 -25.22 16 19 C -0.12 -2.34 5.05 29.85 0.15 -2.19 16 20 C -0.07 -1.67 2.45 -9.72 -0.02 -1.70 16 21 H 0.06 1.73 7.90 -2.39 -0.02 1.71 16 22 C -0.11 -1.45 6.37 31.32 0.20 -1.25 16 23 C -0.15 -2.37 6.41 31.32 0.20 -2.16 16 24 C 0.26 6.69 2.49 31.66 0.08 6.77 16 25 F -0.21 -5.83 17.16 44.97 0.77 -5.06 16 26 F -0.22 -7.06 17.17 44.97 0.77 -6.29 16 27 C -0.15 -4.03 5.33 31.88 0.17 -3.86 16 28 C 0.17 7.76 4.67 83.58 0.39 8.15 16 29 H 0.24 15.30 8.08 -92.71 -0.75 14.55 16 30 H 0.02 0.98 7.99 -2.39 -0.02 0.96 16 31 H 0.05 1.75 6.89 -2.39 -0.02 1.74 16 32 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 34 H 0.02 1.13 6.82 -2.39 -0.02 1.12 16 35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.08 2.20 6.29 -2.39 -0.02 2.18 16 37 H 0.08 2.12 8.04 -2.39 -0.02 2.10 16 38 H 0.40 8.60 8.61 -92.71 -0.80 7.80 16 39 H 0.12 1.60 8.02 -2.39 -0.02 1.58 16 40 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.11 0.82 7.84 -2.39 -0.02 0.80 16 42 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.12 1.32 8.11 -2.39 -0.02 1.30 16 44 H 0.10 1.40 8.12 -2.39 -0.02 1.38 16 45 H 0.06 2.15 7.29 -2.38 -0.02 2.14 16 46 H 0.11 2.48 7.96 -2.39 -0.02 2.46 16 47 H 0.05 2.65 6.06 -2.39 -0.01 2.64 16 48 H 0.02 0.83 8.13 -2.39 -0.02 0.81 16 Total: -1.00 -75.29 367.29 3.96 -71.33 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.19 Total: 18.08 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 4.11 Total: 4.34 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -3.88 Total: -107.10 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.04 Total: -25.22 kcal Atomic # 9 Polarization: -12.89 SS G_CDS: 1.54 Total: -11.35 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -75.29 3.96 -71.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034240021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.379 kcal (2) G-P(sol) polarization free energy of solvation -75.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds