Wall clock time and date at job start Sat Apr 11 2020 02:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46872 * 269.99700 * 3 2 1 5 5 H 1.48497 * 109.47136 * 30.00119 * 3 2 1 6 6 H 1.48499 * 109.46803 * 149.99874 * 3 2 1 7 7 C 1.38820 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99467 * 195.68189 * 7 2 1 9 9 N 1.36933 * 120.00427 * 15.67693 * 7 2 1 10 10 C 1.44573 * 118.64248 * 206.49309 * 9 7 2 11 11 C 1.54865 * 109.60502 * 270.74733 * 10 9 7 12 12 C 1.47092 * 110.31959 * 288.73482 * 11 10 9 13 13 C 1.52565 * 114.32385 * 62.80327 * 12 11 10 14 14 C 1.50883 * 109.35982 * 274.98180 * 13 12 11 15 15 H 1.09002 * 109.25938 * 331.76215 * 14 13 12 16 16 N 1.46493 * 109.36996 * 212.08100 * 14 13 12 17 17 C 1.34784 * 120.00197 * 154.35809 * 16 14 13 18 18 O 1.21284 * 119.99635 * 0.02562 * 17 16 14 19 19 C 1.50696 * 120.00029 * 180.02562 * 17 16 14 20 20 C 1.53004 * 109.47149 * 180.02562 * 19 17 16 21 21 H 1.09002 * 110.01228 * 54.29431 * 20 19 17 22 22 C 1.54257 * 110.03426 * 175.68816 * 20 19 17 23 23 C 1.54890 * 104.19694 * 142.89252 * 22 20 19 24 24 C 1.54884 * 102.74743 * 322.06185 * 23 22 20 25 25 C 1.53869 * 110.02861 * 292.90850 * 20 19 17 26 26 F 1.39897 * 110.03624 * 359.97438 * 25 20 19 27 27 F 1.39905 * 110.03066 * 121.43067 * 25 20 19 28 28 C 1.47606 * 118.64222 * 26.51417 * 9 7 2 29 29 H 0.96996 * 120.00179 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.45475 * 30.79239 * 10 9 7 31 31 H 1.09007 * 109.44413 * 150.70932 * 10 9 7 32 32 H 1.08994 * 109.32665 * 48.99574 * 11 10 9 33 33 H 1.08996 * 109.32874 * 168.65042 * 11 10 9 34 34 H 1.09002 * 108.51071 * 184.05344 * 12 11 10 35 35 H 1.08999 * 108.51733 * 301.70097 * 12 11 10 36 36 H 1.09005 * 109.49150 * 155.01967 * 13 12 11 37 37 H 1.09003 * 109.49462 * 34.94696 * 13 12 11 38 38 H 0.97001 * 120.00204 * 334.36337 * 16 14 13 39 39 H 1.09002 * 109.47175 * 299.99691 * 19 17 16 40 40 H 1.09001 * 109.47381 * 60.00320 * 19 17 16 41 41 H 1.09001 * 110.49225 * 261.57256 * 22 20 19 42 42 H 1.08998 * 110.48941 * 24.21319 * 22 20 19 43 43 H 1.09003 * 110.75062 * 80.37188 * 23 22 20 44 44 H 1.09000 * 110.75909 * 203.74319 * 23 22 20 45 45 H 1.09000 * 110.48590 * 156.62119 * 24 23 22 46 46 H 1.09000 * 110.48645 * 279.12586 * 24 23 22 47 47 H 1.08998 * 108.94748 * 17.16124 * 28 9 7 48 48 H 1.08999 * 108.87673 * 258.48762 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2023 -0.0005 8 1 3.0600 -1.2198 0.2523 9 7 1.3637 -2.3660 -0.3215 10 6 1.8692 -3.6100 0.2142 11 6 2.9234 -4.2022 -0.7535 12 6 2.2720 -4.7058 -1.9723 13 6 1.5639 -3.6339 -2.7953 14 6 0.1724 -3.4235 -2.2512 15 1 -0.1765 -4.3471 -1.7894 16 7 -0.7278 -3.0582 -3.3477 17 6 -2.0474 -3.3151 -3.2502 18 8 -2.4894 -3.8482 -2.2546 19 6 -2.9733 -2.9399 -4.3784 20 6 -4.4058 -3.3371 -4.0160 21 1 -4.6828 -2.9001 -3.0566 22 6 -5.3797 -2.8622 -5.1140 23 6 -6.4293 -3.9974 -5.2077 24 6 -5.5717 -5.2726 -5.0150 25 6 -4.5275 -4.8697 -3.9518 26 9 -3.2937 -5.4611 -4.2437 27 9 -4.9600 -5.2632 -2.6808 28 6 0.1798 -2.2984 -1.2004 29 1 -0.4850 0.8400 -0.0004 30 1 2.3300 -3.4267 1.1849 31 1 1.0467 -4.3157 0.3309 32 1 3.6418 -3.4278 -1.0220 33 1 3.4447 -5.0228 -0.2607 34 1 3.0282 -5.1795 -2.5984 35 1 1.5389 -5.4602 -1.6866 36 1 1.5031 -3.9548 -3.8352 37 1 2.1232 -2.7002 -2.7346 38 1 -0.3743 -2.6316 -4.1439 39 1 -2.9262 -1.8636 -4.5445 40 1 -2.6700 -3.4614 -5.2862 41 1 -5.8556 -1.9258 -4.8229 42 1 -4.8571 -2.7466 -6.0635 43 1 -7.1693 -3.9058 -4.4125 44 1 -6.9101 -3.9993 -6.1859 45 1 -6.1876 -6.0953 -4.6517 46 1 -5.0819 -5.5477 -5.9491 47 1 0.1734 -1.3361 -1.7122 48 1 -0.7187 -2.3795 -0.5887 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034366521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:38:33 Heat of formation + Delta-G solvation = -151.543748 kcal Electronic energy + Delta-G solvation = -30479.239587 eV Core-core repulsion = 26203.699950 eV Total energy + Delta-G solvation = -4275.539637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.80507 -47.90448 -41.00684 -39.39254 -38.20040 -36.00654 -35.18661 -33.02835 -32.68130 -31.33924 -28.78274 -27.99519 -26.96724 -25.87745 -24.64840 -22.25018 -21.92830 -21.48997 -20.97197 -20.72842 -18.67376 -18.59981 -17.94853 -17.80517 -17.24667 -17.02184 -16.88569 -16.06977 -15.81267 -15.70390 -15.36584 -15.17509 -14.89616 -14.78422 -14.62158 -14.32314 -14.25734 -14.11161 -13.80245 -13.77958 -13.22738 -13.02124 -12.95155 -12.82322 -12.78408 -12.52651 -12.45438 -12.20653 -12.13814 -12.11905 -12.04320 -11.87105 -11.58109 -11.55079 -11.42934 -11.40534 -11.17798 -10.76420 -10.50471 -9.96349 -8.67949 -7.84816 -5.34349 1.46060 1.46392 1.56449 1.76797 2.26136 2.52346 2.88536 3.05585 3.26410 3.29003 3.39825 3.64369 3.87768 3.92688 4.01975 4.06144 4.16986 4.29090 4.30416 4.33522 4.38256 4.43373 4.46569 4.59440 4.64320 4.66984 4.74131 4.82037 4.86970 4.92547 5.06555 5.08611 5.11721 5.14371 5.17905 5.26224 5.28686 5.35941 5.41606 5.45328 5.55933 5.62721 5.66967 5.81457 6.38456 6.67949 7.15331 7.40834 7.91356 8.33073 9.19468 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.003535 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.995393 B = 7919.345969 C = 8972.542420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.050 4.050 3 Si 0.969 3.031 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.268 1.268 7 C -0.264 4.264 8 H 0.071 0.929 9 N -0.601 5.601 10 C 0.146 3.854 11 C -0.131 4.131 12 C -0.101 4.101 13 C -0.105 4.105 14 C 0.137 3.863 15 H 0.048 0.952 16 N -0.712 5.712 17 C 0.499 3.501 18 O -0.585 6.585 19 C -0.126 4.126 20 C -0.122 4.122 21 H 0.074 0.926 22 C -0.109 4.109 23 C -0.117 4.117 24 C -0.155 4.155 25 C 0.270 3.730 26 F -0.213 7.213 27 F -0.220 7.220 28 C 0.199 3.801 29 H 0.247 0.753 30 H 0.038 0.962 31 H 0.024 0.976 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.412 0.588 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.071 0.929 44 H 0.113 0.887 45 H 0.091 0.909 46 H 0.116 0.884 47 H 0.051 0.949 48 H -0.031 1.031 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.206 -8.036 -18.666 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.245 4.245 3 Si 0.797 3.203 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.394 4.394 8 H 0.088 0.912 9 N -0.324 5.324 10 C 0.019 3.981 11 C -0.171 4.171 12 C -0.138 4.138 13 C -0.143 4.143 14 C 0.030 3.970 15 H 0.066 0.934 16 N -0.364 5.364 17 C 0.287 3.713 18 O -0.465 6.465 19 C -0.165 4.165 20 C -0.141 4.141 21 H 0.093 0.907 22 C -0.146 4.146 23 C -0.154 4.154 24 C -0.193 4.193 25 C 0.234 3.766 26 F -0.194 7.194 27 F -0.202 7.202 28 C 0.072 3.928 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.249 0.751 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.110 0.890 42 H 0.124 0.876 43 H 0.089 0.911 44 H 0.132 0.868 45 H 0.109 0.891 46 H 0.135 0.865 47 H 0.069 0.931 48 H -0.013 1.013 Dipole moment (debyes) X Y Z Total from point charges -8.597 -8.345 -17.907 21.546 hybrid contribution 0.504 1.004 0.935 1.462 sum -8.093 -7.341 -16.972 20.185 Atomic orbital electron populations 1.70315 1.06849 1.25553 1.55706 1.25856 0.95916 1.01649 1.01125 0.85248 0.77973 0.79374 0.77748 1.20669 1.22611 1.19277 1.19558 0.92701 0.85851 1.41310 0.91164 1.43766 1.32281 1.02757 1.53585 1.20939 0.94889 0.87082 0.95172 1.21309 0.98573 1.00082 0.97119 1.20245 0.99648 0.97144 0.96812 1.21205 0.93305 1.00342 0.99477 1.21247 0.90383 0.97236 0.88094 0.93373 1.45995 1.07221 1.62474 1.20701 1.21444 0.83446 0.77445 0.88957 1.90722 1.76686 1.44658 1.34465 1.21782 0.91734 1.05653 0.97337 1.22658 0.96843 0.91768 1.02866 0.90705 1.22472 0.95116 0.99435 0.97554 1.22513 0.96908 0.91462 1.04501 1.23442 0.96470 1.01299 0.98073 1.22444 0.80482 0.93317 0.80337 1.92927 1.47183 1.86174 1.93142 1.92962 1.89632 1.92594 1.44978 1.20898 0.86540 0.95785 0.89573 0.94411 0.94384 0.95795 0.92823 0.90549 0.90182 0.93543 0.89603 0.91992 0.75099 0.85457 0.85281 0.89045 0.87649 0.91067 0.86824 0.89058 0.86519 0.93098 1.01329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.65 11.01 21.65 0.24 -57.42 16 2 C -0.05 -2.87 4.87 84.86 0.41 -2.45 16 3 Si 0.97 45.23 29.58 68.60 2.03 47.26 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.26 -14.71 9.44 84.04 0.79 -13.92 16 8 H 0.07 3.79 7.88 -2.91 -0.02 3.76 16 9 N -0.60 -31.40 2.27 -698.36 -1.59 -32.98 16 10 C 0.15 6.48 5.65 87.38 0.49 6.97 16 11 C -0.13 -4.53 5.74 29.39 0.17 -4.36 16 12 C -0.10 -3.14 5.16 28.61 0.15 -2.99 16 13 C -0.11 -3.51 5.07 29.76 0.15 -3.36 16 14 C 0.14 5.56 2.28 44.62 0.10 5.67 16 15 H 0.05 2.20 6.73 -2.39 -0.02 2.19 16 16 N -0.71 -23.98 4.97 -444.29 -2.21 -26.19 16 17 C 0.50 17.74 6.67 87.65 0.58 18.33 16 18 O -0.59 -27.32 14.16 -3.04 -0.04 -27.36 16 19 C -0.13 -2.84 4.63 29.85 0.14 -2.70 16 20 C -0.12 -2.83 2.40 -10.07 -0.02 -2.86 16 21 H 0.07 2.24 7.82 -2.39 -0.02 2.23 16 22 C -0.11 -1.35 6.36 31.67 0.20 -1.15 16 23 C -0.12 -1.28 6.91 31.88 0.22 -1.06 16 24 C -0.16 -2.44 6.40 31.70 0.20 -2.24 16 25 C 0.27 7.21 1.79 31.35 0.06 7.27 16 26 F -0.21 -6.58 14.05 44.97 0.63 -5.95 16 27 F -0.22 -7.84 16.74 44.97 0.75 -7.09 16 28 C 0.20 10.36 4.26 86.49 0.37 10.73 16 29 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.04 1.70 7.99 -2.39 -0.02 1.69 16 31 H 0.02 1.08 8.06 -2.38 -0.02 1.06 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.05 1.50 7.35 -2.39 -0.02 1.48 16 36 H 0.09 2.27 7.95 -2.38 -0.02 2.25 16 37 H 0.06 2.34 7.48 -2.39 -0.02 2.32 16 38 H 0.41 10.51 8.56 -92.71 -0.79 9.72 16 39 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.13 2.12 7.66 -2.39 -0.02 2.10 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.11 0.79 7.85 -2.39 -0.02 0.77 16 43 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.09 1.41 8.11 -2.39 -0.02 1.39 16 46 H 0.12 1.34 8.12 -2.39 -0.02 1.32 16 47 H 0.05 2.87 6.31 -2.39 -0.02 2.86 16 48 H -0.03 -1.99 8.03 -2.39 -0.02 -2.01 16 Total: -1.00 -80.67 372.93 3.99 -76.67 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.16 Total: 21.19 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 4.02 Total: 11.87 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -3.56 Total: -116.59 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.04 Total: -27.36 kcal Atomic # 9 Polarization: -14.43 SS G_CDS: 1.38 Total: -13.04 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -80.67 3.99 -76.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034366521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.869 kcal (2) G-P(sol) polarization free energy of solvation -80.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds