Wall clock time and date at job start Sat Apr 11 2020 02:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00014 * 2 1 4 4 H 1.48498 * 109.46938 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47257 * 299.99999 * 3 2 1 6 6 H 1.48502 * 109.46796 * 60.00155 * 3 2 1 7 7 C 1.38819 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99648 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99743 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99260 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.47378 * 324.99451 * 10 9 7 12 12 C 1.52999 * 109.47050 * 85.00442 * 10 9 7 13 13 C 1.52997 * 109.46991 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47131 * 299.99311 * 13 12 10 15 15 H 1.08996 * 109.47452 * 300.00000 * 14 13 12 16 16 N 1.46507 * 109.47258 * 179.97438 * 14 13 12 17 17 C 1.34778 * 119.99609 * 85.00044 * 16 14 13 18 18 O 1.21282 * 120.00113 * 0.02562 * 17 16 14 19 19 C 1.50703 * 119.99867 * 180.02562 * 17 16 14 20 20 H 1.09000 * 110.01288 * 300.06287 * 19 17 16 21 21 C 1.53878 * 110.03230 * 61.45542 * 19 17 16 22 22 C 1.54261 * 106.59910 * 119.28545 * 21 19 17 23 23 C 1.54896 * 104.19512 * 23.60978 * 22 21 19 24 24 C 1.54261 * 110.03077 * 178.62410 * 19 17 16 25 25 H 1.08996 * 110.49053 * 335.78029 * 24 19 17 26 26 C 1.52994 * 110.48922 * 98.42972 * 24 19 17 27 27 F 1.39903 * 109.47507 * 179.97438 * 26 24 19 28 28 F 1.39905 * 109.47016 * 299.99499 * 26 24 19 29 29 C 1.53002 * 109.46972 * 60.00459 * 14 13 12 30 30 C 1.52997 * 109.46817 * 299.99733 * 29 14 13 31 31 H 0.97001 * 120.00197 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00705 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.46719 * 299.99449 * 12 10 9 34 34 H 1.08993 * 109.47839 * 59.99291 * 12 10 9 35 35 H 1.09001 * 109.47289 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.47611 * 59.99933 * 13 12 10 37 37 H 0.97001 * 120.00071 * 265.00501 * 16 14 13 38 38 H 1.08997 * 110.02707 * 238.57254 * 21 19 17 39 39 H 1.09003 * 110.03153 * 359.95115 * 21 19 17 40 40 H 1.08993 * 110.48588 * 142.28653 * 22 21 19 41 41 H 1.08995 * 110.48614 * 264.93477 * 22 21 19 42 42 H 1.08998 * 110.75307 * 80.37292 * 23 22 21 43 43 H 1.09000 * 110.75669 * 203.56105 * 23 22 21 44 44 H 1.09003 * 109.47750 * 59.99335 * 26 24 19 45 45 H 1.09002 * 109.47070 * 179.97438 * 29 14 13 46 46 H 1.08996 * 109.47407 * 59.99513 * 29 14 13 47 47 H 1.09001 * 109.47502 * 300.00518 * 30 29 14 48 48 H 1.09001 * 109.47289 * 180.02562 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9686 -3.5506 -0.5889 12 6 2.4218 -4.0356 1.4376 13 6 3.1863 -5.3609 1.4376 14 6 2.3087 -6.4560 0.8282 15 1 1.3980 -6.5619 1.4178 16 7 3.0409 -7.7249 0.8277 17 6 3.0324 -8.5082 1.9245 18 8 2.4183 -8.1629 2.9116 19 6 3.7861 -9.8133 1.9242 20 1 3.4032 -10.4650 1.1389 21 6 5.2877 -9.5547 1.7091 22 6 6.0115 -10.0958 2.9593 23 6 5.0358 -11.1517 3.5359 24 6 3.6499 -10.5024 3.2975 25 1 3.4342 -9.7678 4.0733 26 6 2.5577 -11.5730 3.2535 27 9 2.4526 -12.1839 4.5076 28 9 1.3357 -10.9790 2.9198 29 6 1.9448 -6.0772 -0.6088 30 6 1.1803 -4.7520 -0.6089 31 1 -0.4850 0.8400 0.0004 32 1 0.3555 -2.3881 0.0005 33 1 3.0468 -3.2553 1.8718 34 1 1.5112 -4.1419 2.0270 35 1 3.4459 -5.6306 2.4613 36 1 4.0971 -5.2551 0.8481 37 1 3.5319 -8.0013 0.0381 38 1 5.6336 -10.0817 0.8199 39 1 5.4712 -8.4854 1.6041 40 1 6.9568 -10.5617 2.6810 41 1 6.1772 -9.2955 3.6804 42 1 5.1202 -12.0929 2.9927 43 1 5.2163 -11.3040 4.6000 44 1 2.8137 -12.3227 2.5048 45 1 1.3199 -6.8576 -1.0431 46 1 2.8554 -5.9713 -1.1983 47 1 0.2697 -4.8577 -0.0192 48 1 0.9207 -4.4823 -1.6326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034659751.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:37:29 Heat of formation + Delta-G solvation = -162.600630 kcal Electronic energy + Delta-G solvation = -29095.391751 eV Core-core repulsion = 24819.372652 eV Total energy + Delta-G solvation = -4276.019099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.13300 -47.14135 -40.53611 -38.56580 -37.27956 -34.87229 -33.08146 -30.94967 -30.72239 -30.39994 -29.60260 -27.15667 -25.13408 -23.66221 -22.43233 -22.00664 -21.28680 -20.80743 -20.05927 -19.42550 -18.07840 -17.27667 -17.15720 -17.06202 -16.80874 -16.17561 -15.42183 -15.04376 -14.85043 -14.34654 -14.18551 -14.02046 -13.74351 -13.69443 -13.66223 -13.49655 -13.48809 -13.02720 -12.67453 -12.43351 -12.11533 -12.02941 -11.83076 -11.72705 -11.64798 -11.42514 -11.37424 -11.15356 -11.02506 -10.96680 -10.82272 -10.75268 -10.65051 -10.14839 -10.09839 -9.82216 -9.74402 -9.56078 -8.97049 -8.84026 -6.92613 -5.74348 -3.02738 2.54368 3.00448 3.44210 3.49602 3.50205 3.52005 3.71464 3.83528 3.99813 4.42640 4.54122 4.59774 4.61285 4.74959 4.83277 4.90175 4.98759 5.03591 5.05367 5.12845 5.17352 5.29182 5.39172 5.53060 5.55137 5.60629 5.62102 5.68908 5.72848 5.74377 5.82011 5.87465 5.88673 6.03652 6.24872 6.28320 6.31491 6.48759 6.58292 6.66677 6.73696 7.00137 7.16538 7.43960 7.72457 8.16483 8.44532 9.55457 10.14355 10.48815 11.48533 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.024287 B = 0.002253 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.587549 B =12423.868232 C =12795.918269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.178 3.822 11 H 0.045 0.955 12 C -0.132 4.132 13 C -0.122 4.122 14 C 0.145 3.855 15 H 0.087 0.913 16 N -0.724 5.724 17 C 0.517 3.483 18 O -0.528 6.528 19 C -0.107 4.107 20 H 0.102 0.898 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.134 4.134 25 H 0.119 0.881 26 C 0.270 3.730 27 F -0.205 7.205 28 F -0.199 7.199 29 C -0.118 4.118 30 C -0.121 4.121 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.397 0.603 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.106 0.894 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.777 -27.936 1.654 30.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.068 3.932 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.162 4.162 14 C 0.041 3.959 15 H 0.105 0.895 16 N -0.375 5.375 17 C 0.302 3.698 18 O -0.404 6.404 19 C -0.129 4.129 20 H 0.120 0.880 21 C -0.154 4.154 22 C -0.159 4.159 23 C -0.153 4.153 24 C -0.153 4.153 25 H 0.137 0.863 26 C 0.216 3.784 27 F -0.187 7.187 28 F -0.180 7.180 29 C -0.157 4.157 30 C -0.160 4.160 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.230 0.770 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.123 0.877 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.404 -27.516 2.372 29.880 hybrid contribution 0.193 0.847 -0.290 0.915 sum 11.596 -26.670 2.082 29.156 Atomic orbital electron populations 1.69671 1.05092 1.25474 1.57937 1.24745 0.95509 0.97668 1.03214 0.86141 0.78762 0.84287 0.77166 1.20605 1.21923 1.21913 1.19283 0.90972 0.84155 1.42280 0.91199 1.42444 1.05807 0.99818 1.88540 1.20230 0.94245 0.85967 0.92758 0.93649 1.22223 0.99788 0.94491 1.00831 1.21881 0.98526 0.95414 1.00333 1.21119 0.95499 0.81777 0.97478 0.89457 1.46125 1.53416 1.21942 1.15980 1.20319 0.80909 0.85308 0.83254 1.90732 1.43009 1.73525 1.33147 1.21897 0.97274 0.95486 0.98238 0.87981 1.22162 0.91487 1.02549 0.99227 1.22330 0.98183 0.98436 0.96968 1.22503 0.92215 0.98372 1.02236 1.23076 0.94847 0.97860 0.99539 0.86316 1.21940 0.81957 0.92194 0.82292 1.92981 1.96487 1.84204 1.45008 1.93040 1.47139 1.85525 1.92302 1.21742 1.00780 0.98270 0.94880 1.21756 0.98973 0.93472 1.01765 0.93601 0.78305 0.91844 0.92502 0.92469 0.92400 0.76968 0.90372 0.90569 0.90705 0.90935 0.90738 0.90212 0.87664 0.91919 0.91624 0.91967 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.20 5.12 -53.42 -0.27 -18.48 16 10 C 0.18 3.47 2.77 -67.93 -0.19 3.28 16 11 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 12 C -0.13 -2.42 5.50 -26.73 -0.15 -2.57 16 13 C -0.12 -1.79 5.49 -26.73 -0.15 -1.94 16 14 C 0.14 1.89 2.45 -67.93 -0.17 1.73 16 15 H 0.09 1.37 7.58 -51.93 -0.39 0.97 16 16 N -0.72 -7.38 4.92 -53.80 -0.26 -7.64 16 17 C 0.52 5.93 6.85 -10.98 -0.08 5.86 16 18 O -0.53 -8.51 15.08 5.56 0.08 -8.42 16 19 C -0.11 -0.79 2.65 -90.65 -0.24 -1.03 16 20 H 0.10 0.54 7.84 -51.93 -0.41 0.14 16 21 C -0.12 -0.63 6.36 -25.61 -0.16 -0.79 16 22 C -0.12 -0.64 6.83 -25.07 -0.17 -0.81 16 23 C -0.12 -0.63 6.22 -24.73 -0.15 -0.78 16 24 C -0.13 -1.09 2.32 -88.96 -0.21 -1.29 16 25 H 0.12 1.32 6.90 -51.93 -0.36 0.96 16 26 C 0.27 2.27 4.58 37.15 0.17 2.44 16 27 F -0.21 -2.08 17.21 2.25 0.04 -2.05 16 28 F -0.20 -2.40 17.05 2.25 0.04 -2.36 16 29 C -0.12 -1.44 5.39 -26.73 -0.14 -1.58 16 30 C -0.12 -1.93 5.39 -26.73 -0.14 -2.08 16 31 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.38 10.27 7.80 -40.82 -0.32 9.95 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.40 2.80 8.57 -40.82 -0.35 2.45 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.49 7.59 -51.93 -0.39 0.10 16 40 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.28 8.04 -51.93 -0.42 -0.14 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.11 0.49 8.12 -51.93 -0.42 0.07 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 385.90 15.07 5.82 5.82 Total: -1.00 -33.76 385.90 -8.98 -42.75 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -8.10 Total: 7.41 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -2.02 Total: -6.82 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.19 Total: -53.83 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.08 Total: -8.42 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.08 Total: -4.41 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.76 -8.98 -42.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034659751.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.855 kcal (2) G-P(sol) polarization free energy of solvation -33.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds