Wall clock time and date at job start Sat Apr 11 2020 02:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99598 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99591 * 3 2 1 7 7 C 1.38811 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99727 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47474 * 325.00605 * 10 9 7 12 12 C 1.53007 * 109.46908 * 85.00241 * 10 9 7 13 13 C 1.53002 * 109.46881 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46937 * 299.99570 * 13 12 10 15 15 H 1.08993 * 109.47856 * 300.00238 * 14 13 12 16 16 N 1.46500 * 109.47321 * 179.97438 * 14 13 12 17 17 C 1.34782 * 119.99934 * 84.99977 * 16 14 13 18 18 O 1.21277 * 119.99816 * 0.02562 * 17 16 14 19 19 C 1.50699 * 120.00261 * 180.02562 * 17 16 14 20 20 H 1.08997 * 109.46910 * 59.99988 * 19 17 16 21 21 C 1.52999 * 109.47042 * 180.02562 * 19 17 16 22 22 C 1.53002 * 109.46751 * 180.02562 * 21 19 17 23 23 C 1.52998 * 109.47204 * 299.99770 * 22 21 19 24 24 C 1.52999 * 109.47078 * 60.00431 * 23 22 21 25 25 F 1.39900 * 109.47453 * 59.99988 * 24 23 22 26 26 F 1.39906 * 109.46979 * 180.02562 * 24 23 22 27 27 C 1.52998 * 109.47065 * 300.00227 * 19 17 16 28 28 C 1.53007 * 109.46983 * 60.00492 * 14 13 12 29 29 C 1.52992 * 109.46878 * 299.99619 * 28 14 13 30 30 H 0.97001 * 119.99952 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00177 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46879 * 299.99671 * 12 10 9 33 33 H 1.08998 * 109.46756 * 59.99924 * 12 10 9 34 34 H 1.09000 * 109.47174 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.47447 * 59.99622 * 13 12 10 36 36 H 0.96998 * 120.00423 * 265.00607 * 16 14 13 37 37 H 1.09004 * 109.46700 * 299.99300 * 21 19 17 38 38 H 1.08991 * 109.47142 * 60.00100 * 21 19 17 39 39 H 1.09008 * 109.47300 * 60.00076 * 22 21 19 40 40 H 1.09000 * 109.47182 * 179.97438 * 22 21 19 41 41 H 1.09005 * 109.46957 * 180.02562 * 23 22 21 42 42 H 1.08997 * 109.47062 * 299.99939 * 23 22 21 43 43 H 1.09002 * 109.46847 * 300.00091 * 27 19 17 44 44 H 1.09009 * 109.47136 * 59.99745 * 27 19 17 45 45 H 1.08998 * 109.46879 * 179.97438 * 28 14 13 46 46 H 1.08995 * 109.47085 * 60.00024 * 28 14 13 47 47 H 1.08998 * 109.47438 * 299.99596 * 29 28 14 48 48 H 1.09005 * 109.46990 * 180.02562 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5505 -0.5888 12 6 2.4220 -4.0355 1.4376 13 6 3.1877 -5.3602 1.4376 14 6 2.3110 -6.4558 0.8278 15 1 1.4003 -6.5626 1.4170 16 7 3.0443 -7.7241 0.8271 17 6 3.0362 -8.5078 1.9237 18 8 2.4216 -8.1631 2.9107 19 6 3.7909 -9.8121 1.9233 20 1 4.8489 -9.6197 1.7449 21 6 3.6188 -10.5014 3.2783 22 6 4.3856 -11.8254 3.2781 23 6 3.8394 -12.7308 2.1723 24 6 4.0116 -12.0416 0.8173 25 9 5.3695 -11.7941 0.5891 26 9 3.5117 -12.8693 -0.1938 27 6 3.2439 -10.7175 0.8179 28 6 1.9472 -6.0770 -0.6093 29 6 1.1816 -4.7524 -0.6093 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 3.0469 -3.2551 1.8719 33 1 1.5113 -4.1418 2.0270 34 1 3.4465 -5.6303 2.4614 35 1 4.0984 -5.2535 0.8482 36 1 3.5356 -7.9999 0.0376 37 1 4.0084 -9.8565 4.0660 38 1 2.5608 -10.6938 3.4562 39 1 5.4436 -11.6325 3.1004 40 1 4.2633 -12.3162 4.2436 41 1 4.3854 -13.6743 2.1725 42 1 2.7815 -12.9237 2.3501 43 1 2.1859 -10.9099 0.9963 44 1 3.3662 -10.2266 -0.1477 45 1 1.3230 -6.8578 -1.0439 46 1 2.8579 -5.9704 -1.1986 47 1 0.2708 -4.8592 -0.0200 48 1 0.9220 -4.4828 -1.6330 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034731748.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:37:49 Heat of formation + Delta-G solvation = -163.562086 kcal Electronic energy + Delta-G solvation = -28986.453299 eV Core-core repulsion = 24710.392508 eV Total energy + Delta-G solvation = -4276.060791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.41344 -47.39839 -40.51173 -38.49910 -37.23804 -35.07159 -33.41007 -31.98831 -30.50632 -30.40788 -30.34728 -27.23593 -24.60996 -23.48720 -23.13184 -22.42330 -21.44242 -20.75646 -20.28927 -19.51598 -18.12057 -17.35380 -17.22731 -16.83665 -16.67530 -16.30136 -15.65218 -15.30411 -14.65692 -14.58753 -14.34223 -13.95795 -13.93238 -13.80876 -13.72119 -13.64857 -13.52995 -13.28388 -13.18798 -12.76178 -12.60992 -12.31080 -12.13431 -11.89623 -11.80732 -11.38831 -11.32696 -11.25240 -11.16066 -10.94651 -10.83958 -10.73909 -10.47389 -10.18469 -9.98443 -9.96669 -9.82054 -9.15697 -9.04380 -8.86014 -7.01507 -6.08311 -3.07893 2.38131 2.90121 3.28570 3.52272 3.55406 3.55901 3.73339 3.77796 3.83382 4.31808 4.37857 4.44996 4.59903 4.67694 4.71033 4.77713 4.84536 4.89546 4.96873 5.13212 5.18089 5.28585 5.29983 5.35840 5.49917 5.50116 5.51994 5.61358 5.65107 5.68643 5.76784 5.78705 5.84761 5.93794 6.13410 6.17364 6.20513 6.36841 6.46458 6.53287 6.63591 6.90684 7.06420 7.32963 7.82712 8.04088 8.77580 9.25254 10.11573 10.26742 11.40198 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.030268 B = 0.002092 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.855411 B =13381.665820 C =13657.859369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.047 4.047 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.329 4.329 8 H 0.064 0.936 9 N -0.737 5.737 10 C 0.183 3.817 11 H 0.047 0.953 12 C -0.131 4.131 13 C -0.123 4.123 14 C 0.145 3.855 15 H 0.087 0.913 16 N -0.724 5.724 17 C 0.518 3.482 18 O -0.532 6.532 19 C -0.107 4.107 20 H 0.107 0.893 21 C -0.105 4.105 22 C -0.120 4.120 23 C -0.160 4.160 24 C 0.292 3.708 25 F -0.198 7.198 26 F -0.200 7.200 27 C -0.151 4.151 28 C -0.118 4.118 29 C -0.121 4.121 30 H 0.255 0.745 31 H 0.366 0.634 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.397 0.603 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.060 0.940 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.151 -28.657 2.540 30.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.244 4.244 3 Si 0.910 3.090 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.379 5.379 10 C 0.073 3.927 11 H 0.065 0.935 12 C -0.172 4.172 13 C -0.162 4.162 14 C 0.041 3.959 15 H 0.106 0.894 16 N -0.375 5.375 17 C 0.304 3.696 18 O -0.408 6.408 19 C -0.128 4.128 20 H 0.125 0.875 21 C -0.143 4.143 22 C -0.157 4.157 23 C -0.198 4.198 24 C 0.256 3.744 25 F -0.179 7.179 26 F -0.181 7.181 27 C -0.189 4.189 28 C -0.157 4.157 29 C -0.160 4.160 30 H 0.066 0.934 31 H 0.199 0.801 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.231 0.769 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.120 0.880 44 H 0.111 0.889 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.781 -26.706 3.206 28.295 hybrid contribution 0.328 -1.898 -0.575 2.010 sum 9.109 -28.603 2.631 30.134 Atomic orbital electron populations 1.70878 1.06031 1.28413 1.53710 1.25756 0.97078 1.00981 1.00605 0.83254 0.74221 0.75706 0.75822 1.21057 1.22316 1.22305 1.20031 0.91936 0.85816 1.48187 0.91843 1.42440 1.04786 1.00806 1.89853 1.20169 0.94214 0.85454 0.92871 0.93508 1.22200 0.99728 0.94618 1.00679 1.21889 0.98592 0.95285 1.00476 1.21124 0.95461 0.81860 0.97450 0.89442 1.46213 1.53194 1.21944 1.16128 1.20329 0.81022 0.85135 0.83153 1.90734 1.43088 1.73909 1.33058 1.21324 1.01669 0.92889 0.96921 0.87511 1.21447 1.01984 0.95588 0.95276 1.21553 1.00641 0.95171 0.98338 1.22564 1.04836 1.00224 0.92167 1.21024 0.76431 0.90293 0.86690 1.93007 1.34418 1.94922 1.95518 1.93028 1.87365 1.74183 1.63542 1.22522 1.01853 0.93719 1.00845 1.21740 1.00867 0.98161 0.94942 1.21764 0.98920 0.93675 1.01680 0.93397 0.80071 0.91753 0.92660 0.92309 0.92258 0.76867 0.89989 0.90465 0.90713 0.89903 0.89307 0.88561 0.88003 0.88899 0.91831 0.91500 0.92106 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.43 13.70 55.49 0.76 -28.67 16 2 C -0.05 -1.37 5.50 -17.43 -0.10 -1.46 16 3 Si 1.08 26.11 29.92 -169.99 -5.09 21.03 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.33 -9.25 9.93 -15.06 -0.15 -9.40 16 8 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.74 -18.43 5.12 -53.42 -0.27 -18.70 16 10 C 0.18 3.58 2.77 -67.93 -0.19 3.39 16 11 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 12 C -0.13 -2.40 5.50 -26.73 -0.15 -2.54 16 13 C -0.12 -1.80 5.49 -26.73 -0.15 -1.95 16 14 C 0.14 1.83 2.45 -67.93 -0.17 1.67 16 15 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 16 N -0.72 -7.16 4.97 -53.81 -0.27 -7.43 16 17 C 0.52 5.60 7.12 -10.98 -0.08 5.52 16 18 O -0.53 -7.96 15.65 5.56 0.09 -7.87 16 19 C -0.11 -0.78 2.40 -91.77 -0.22 -1.00 16 20 H 0.11 0.70 7.80 -51.93 -0.41 0.30 16 21 C -0.11 -0.74 4.49 -26.73 -0.12 -0.86 16 22 C -0.12 -0.61 5.80 -26.73 -0.16 -0.76 16 23 C -0.16 -0.82 5.45 -26.73 -0.15 -0.97 16 24 C 0.29 2.02 2.10 -26.70 -0.06 1.97 16 25 F -0.20 -1.65 16.02 2.25 0.04 -1.61 16 26 F -0.20 -1.73 17.06 2.25 0.04 -1.69 16 27 C -0.15 -0.95 4.63 -26.70 -0.12 -1.08 16 28 C -0.12 -1.42 5.39 -26.73 -0.14 -1.56 16 29 C -0.12 -1.91 5.39 -26.74 -0.14 -2.06 16 30 H 0.25 7.81 6.77 -40.82 -0.28 7.53 16 31 H 0.37 9.47 6.63 -40.82 -0.27 9.20 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.40 2.85 8.02 -40.82 -0.33 2.53 16 37 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 39 H 0.07 0.39 7.80 -51.92 -0.41 -0.01 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.51 7.56 -51.92 -0.39 0.12 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 380.17 15.07 5.73 5.73 Total: -1.00 -33.66 380.17 -9.07 -42.73 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -8.01 Total: 7.60 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -2.08 Total: -11.11 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.22 Total: -54.80 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.09 Total: -7.87 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.07 Total: -3.31 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.09 Total: 21.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.66 -9.07 -42.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034731748.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.833 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds