Wall clock time and date at job start Sat Apr 11 2020 02:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99598 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99591 * 3 2 1 7 7 C 1.38811 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99727 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47474 * 325.00605 * 10 9 7 12 12 C 1.53007 * 109.46908 * 85.00241 * 10 9 7 13 13 C 1.53002 * 109.46881 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46937 * 299.99570 * 13 12 10 15 15 H 1.08993 * 109.47856 * 300.00238 * 14 13 12 16 16 N 1.46500 * 109.47321 * 179.97438 * 14 13 12 17 17 C 1.34782 * 119.99934 * 84.99977 * 16 14 13 18 18 O 1.21277 * 119.99816 * 0.02562 * 17 16 14 19 19 C 1.50699 * 120.00261 * 180.02562 * 17 16 14 20 20 H 1.08997 * 109.46910 * 59.99988 * 19 17 16 21 21 C 1.52999 * 109.47042 * 180.02562 * 19 17 16 22 22 C 1.53002 * 109.46751 * 180.02562 * 21 19 17 23 23 C 1.52998 * 109.47204 * 299.99770 * 22 21 19 24 24 C 1.52999 * 109.47078 * 60.00431 * 23 22 21 25 25 F 1.39900 * 109.47453 * 59.99988 * 24 23 22 26 26 F 1.39906 * 109.46979 * 180.02562 * 24 23 22 27 27 C 1.52998 * 109.47065 * 300.00227 * 19 17 16 28 28 C 1.53007 * 109.46983 * 60.00492 * 14 13 12 29 29 C 1.52992 * 109.46878 * 299.99619 * 28 14 13 30 30 H 0.97001 * 119.99952 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00177 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46879 * 299.99671 * 12 10 9 33 33 H 1.08998 * 109.46756 * 59.99924 * 12 10 9 34 34 H 1.09000 * 109.47174 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.47447 * 59.99622 * 13 12 10 36 36 H 0.96998 * 120.00423 * 265.00607 * 16 14 13 37 37 H 1.09004 * 109.46700 * 299.99300 * 21 19 17 38 38 H 1.08991 * 109.47142 * 60.00100 * 21 19 17 39 39 H 1.09008 * 109.47300 * 60.00076 * 22 21 19 40 40 H 1.09000 * 109.47182 * 179.97438 * 22 21 19 41 41 H 1.09005 * 109.46957 * 180.02562 * 23 22 21 42 42 H 1.08997 * 109.47062 * 299.99939 * 23 22 21 43 43 H 1.09002 * 109.46847 * 300.00091 * 27 19 17 44 44 H 1.09009 * 109.47136 * 59.99745 * 27 19 17 45 45 H 1.08998 * 109.46879 * 179.97438 * 28 14 13 46 46 H 1.08995 * 109.47085 * 60.00024 * 28 14 13 47 47 H 1.08998 * 109.47438 * 299.99596 * 29 28 14 48 48 H 1.09005 * 109.46990 * 180.02562 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5505 -0.5888 12 6 2.4220 -4.0355 1.4376 13 6 3.1877 -5.3602 1.4376 14 6 2.3110 -6.4558 0.8278 15 1 1.4003 -6.5626 1.4170 16 7 3.0443 -7.7241 0.8271 17 6 3.0362 -8.5078 1.9237 18 8 2.4216 -8.1631 2.9107 19 6 3.7909 -9.8121 1.9233 20 1 4.8489 -9.6197 1.7449 21 6 3.6188 -10.5014 3.2783 22 6 4.3856 -11.8254 3.2781 23 6 3.8394 -12.7308 2.1723 24 6 4.0116 -12.0416 0.8173 25 9 5.3695 -11.7941 0.5891 26 9 3.5117 -12.8693 -0.1938 27 6 3.2439 -10.7175 0.8179 28 6 1.9472 -6.0770 -0.6093 29 6 1.1816 -4.7524 -0.6093 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 3.0469 -3.2551 1.8719 33 1 1.5113 -4.1418 2.0270 34 1 3.4465 -5.6303 2.4614 35 1 4.0984 -5.2535 0.8482 36 1 3.5356 -7.9999 0.0376 37 1 4.0084 -9.8565 4.0660 38 1 2.5608 -10.6938 3.4562 39 1 5.4436 -11.6325 3.1004 40 1 4.2633 -12.3162 4.2436 41 1 4.3854 -13.6743 2.1725 42 1 2.7815 -12.9237 2.3501 43 1 2.1859 -10.9099 0.9963 44 1 3.3662 -10.2266 -0.1477 45 1 1.3230 -6.8578 -1.0439 46 1 2.8579 -5.9704 -1.1986 47 1 0.2708 -4.8592 -0.0200 48 1 0.9220 -4.4828 -1.6330 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034731748.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:37:49 Heat of formation + Delta-G solvation = -184.421497 kcal Electronic energy + Delta-G solvation = -28987.357831 eV Core-core repulsion = 24710.392508 eV Total energy + Delta-G solvation = -4276.965323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.98308 -47.98180 -41.40946 -39.66465 -38.01128 -36.60462 -34.88950 -32.89515 -31.85250 -31.77395 -30.91129 -28.74687 -25.76558 -24.96783 -23.78576 -23.67762 -22.62251 -21.59832 -21.18303 -20.66179 -19.37441 -18.75239 -17.93233 -17.50563 -17.38338 -17.34629 -16.79672 -16.27619 -15.94265 -15.59343 -15.39966 -15.26192 -15.16118 -15.03920 -14.79841 -14.46042 -14.31370 -14.12483 -13.86508 -13.65147 -13.52202 -13.28466 -13.17551 -13.07729 -12.77487 -12.71357 -12.42095 -12.29629 -12.22751 -12.11010 -11.87999 -11.85047 -11.76988 -11.55227 -11.50233 -11.45636 -11.13139 -10.87495 -10.71987 -10.08116 -9.11620 -8.38879 -5.32278 1.53607 1.57012 1.67174 1.83367 2.06120 2.71083 2.75955 3.06134 3.25111 3.34221 3.39489 3.63962 3.68633 3.76264 3.80153 3.86016 3.91256 4.14229 4.18505 4.20425 4.27799 4.29029 4.31431 4.41510 4.45645 4.50472 4.56161 4.69055 4.76799 4.80820 4.88225 4.89496 4.91003 5.03338 5.06333 5.11620 5.15275 5.16995 5.18533 5.34391 5.42650 5.46401 5.53824 5.61284 6.49890 6.52398 7.10780 7.22025 8.01283 8.12696 9.13202 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.030268 B = 0.002092 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.855411 B =13381.665820 C =13657.859369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.109 4.109 3 Si 1.126 2.874 4 H -0.294 1.294 5 H -0.275 1.275 6 H -0.280 1.280 7 C -0.326 4.326 8 H 0.065 0.935 9 N -0.752 5.752 10 C 0.177 3.823 11 H 0.044 0.956 12 C -0.122 4.122 13 C -0.112 4.112 14 C 0.153 3.847 15 H 0.066 0.934 16 N -0.711 5.711 17 C 0.518 3.482 18 O -0.577 6.577 19 C -0.096 4.096 20 H 0.120 0.880 21 C -0.105 4.105 22 C -0.112 4.112 23 C -0.158 4.158 24 C 0.288 3.712 25 F -0.206 7.206 26 F -0.210 7.210 27 C -0.148 4.148 28 C -0.106 4.106 29 C -0.114 4.114 30 H 0.243 0.757 31 H 0.358 0.642 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.415 0.585 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.053 0.947 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.864 -30.697 1.687 32.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.300 4.300 3 Si 0.951 3.049 4 H -0.220 1.220 5 H -0.201 1.201 6 H -0.206 1.206 7 C -0.458 4.458 8 H 0.083 0.917 9 N -0.393 5.393 10 C 0.069 3.931 11 H 0.062 0.938 12 C -0.163 4.163 13 C -0.151 4.151 14 C 0.048 3.952 15 H 0.084 0.916 16 N -0.362 5.362 17 C 0.305 3.695 18 O -0.456 6.456 19 C -0.117 4.117 20 H 0.138 0.862 21 C -0.143 4.143 22 C -0.149 4.149 23 C -0.196 4.196 24 C 0.252 3.748 25 F -0.187 7.187 26 F -0.191 7.191 27 C -0.186 4.186 28 C -0.144 4.144 29 C -0.153 4.153 30 H 0.054 0.946 31 H 0.190 0.810 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.253 0.747 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.109 0.891 46 H 0.105 0.895 47 H 0.072 0.928 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.548 -28.820 2.324 30.778 hybrid contribution -0.185 -1.321 -0.279 1.363 sum 10.363 -30.141 2.045 31.938 Atomic orbital electron populations 1.70989 1.07173 1.27830 1.56574 1.27188 0.97163 1.04696 1.00904 0.82644 0.73391 0.71708 0.77129 1.21971 1.20148 1.20639 1.20364 0.92218 0.87087 1.46104 0.91685 1.42699 1.04639 1.02019 1.89965 1.20428 0.94377 0.84640 0.93626 0.93772 1.22000 0.98956 0.96074 0.99234 1.21757 0.98943 0.93773 1.00612 1.20812 0.94437 0.82455 0.97483 0.91594 1.46008 1.52763 1.20645 1.16807 1.20919 0.80290 0.85936 0.82362 1.90725 1.45054 1.75052 1.34750 1.21271 1.01702 0.91108 0.97653 0.86224 1.21437 1.01797 0.96396 0.94677 1.21505 1.00239 0.94075 0.99116 1.22597 1.05698 1.00352 0.90979 1.21235 0.75920 0.90529 0.87107 1.92991 1.35114 1.94985 1.95611 1.93009 1.87481 1.74502 1.64148 1.22510 1.01927 0.93333 1.00860 1.21647 1.01680 0.96448 0.94619 1.21649 0.98408 0.94354 1.00878 0.94628 0.81038 0.94421 0.94324 0.93173 0.90686 0.74745 0.91297 0.91219 0.90610 0.88534 0.88440 0.87570 0.87599 0.87719 0.89072 0.89535 0.92808 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.29 13.70 21.65 0.30 -61.99 16 2 C -0.11 -6.42 5.50 84.86 0.47 -5.95 16 3 Si 1.13 52.75 29.92 68.60 2.05 54.80 16 4 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.33 -18.57 9.93 84.03 0.83 -17.74 16 8 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 9 N -0.75 -38.40 5.12 -322.93 -1.65 -40.06 16 10 C 0.18 6.94 2.77 44.99 0.12 7.06 16 11 H 0.04 1.76 8.08 -2.39 -0.02 1.74 16 12 C -0.12 -4.52 5.50 30.60 0.17 -4.35 16 13 C -0.11 -3.16 5.49 30.59 0.17 -2.99 16 14 C 0.15 3.62 2.45 44.99 0.11 3.73 16 15 H 0.07 1.91 7.58 -2.39 -0.02 1.89 16 16 N -0.71 -12.25 4.97 -442.53 -2.20 -14.45 16 17 C 0.52 10.36 7.12 87.66 0.62 10.98 16 18 O -0.58 -17.08 15.65 -3.02 -0.05 -17.13 16 19 C -0.10 -1.21 2.40 -11.54 -0.03 -1.24 16 20 H 0.12 1.25 7.80 -2.39 -0.02 1.23 16 21 C -0.11 -1.33 4.49 30.59 0.14 -1.19 16 22 C -0.11 -0.89 5.80 30.59 0.18 -0.71 16 23 C -0.16 -1.25 5.45 30.59 0.17 -1.08 16 24 C 0.29 3.31 2.10 30.61 0.06 3.37 16 25 F -0.21 -2.94 16.02 44.97 0.72 -2.22 16 26 F -0.21 -3.19 17.06 44.97 0.77 -2.42 16 27 C -0.15 -1.48 4.63 30.61 0.14 -1.34 16 28 C -0.11 -2.23 5.39 30.59 0.16 -2.06 16 29 C -0.11 -3.48 5.39 30.59 0.16 -3.32 16 30 H 0.24 15.46 6.77 -92.71 -0.63 14.83 16 31 H 0.36 19.18 6.63 -92.71 -0.61 18.57 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 36 H 0.42 4.39 8.02 -92.71 -0.74 3.65 16 37 H 0.07 1.06 8.10 -2.38 -0.02 1.04 16 38 H 0.07 0.99 8.10 -2.39 -0.02 0.97 16 39 H 0.08 0.62 7.80 -2.38 -0.02 0.60 16 40 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.10 0.63 8.14 -2.38 -0.02 0.62 16 42 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.10 0.80 7.56 -2.38 -0.02 0.79 16 45 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -74.73 380.17 3.17 -71.56 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -0.25 Total: 28.76 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 3.49 Total: -16.84 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -3.56 Total: -116.50 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.05 Total: -17.13 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 1.49 Total: -4.64 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 2.05 Total: 54.80 kcal Total: -74.73 3.17 -71.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034731748.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.864 kcal (2) G-P(sol) polarization free energy of solvation -74.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds