Wall clock time and date at job start Sat Apr 11 2020 02:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99837 * 2 1 4 4 H 1.48508 * 109.47019 * 269.99680 * 3 2 1 5 5 H 1.48497 * 109.47484 * 29.99613 * 3 2 1 6 6 H 1.48503 * 109.47281 * 149.99947 * 3 2 1 7 7 C 1.38813 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99640 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00109 * 179.97438 * 7 2 1 10 10 C 1.46497 * 119.99808 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.46915 * 35.00855 * 10 9 7 12 12 C 1.53002 * 109.46729 * 155.00140 * 10 9 7 13 13 C 1.52997 * 109.46978 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47415 * 300.00098 * 13 12 10 15 15 H 1.09002 * 109.47070 * 300.00053 * 14 13 12 16 16 N 1.46505 * 109.47411 * 179.97438 * 14 13 12 17 17 C 1.34769 * 119.99798 * 155.00053 * 16 14 13 18 18 O 1.21280 * 120.00742 * 0.02562 * 17 16 14 19 19 C 1.50705 * 119.99510 * 179.97438 * 17 16 14 20 20 H 1.08995 * 109.47765 * 299.99977 * 19 17 16 21 21 C 1.52999 * 109.47049 * 180.02562 * 19 17 16 22 22 C 1.52997 * 109.47350 * 180.02562 * 21 19 17 23 23 C 1.53002 * 109.47077 * 60.00211 * 22 21 19 24 24 C 1.52999 * 109.46858 * 300.00090 * 23 22 21 25 25 F 1.39901 * 109.47303 * 180.02562 * 24 23 22 26 26 F 1.39898 * 109.47293 * 299.99775 * 24 23 22 27 27 C 1.52997 * 109.47350 * 60.00077 * 24 23 22 28 28 C 1.52997 * 109.46817 * 59.99873 * 14 13 12 29 29 C 1.52992 * 109.47482 * 300.00014 * 28 14 13 30 30 H 0.96998 * 119.99905 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99779 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47097 * 60.00183 * 12 10 9 33 33 H 1.08998 * 109.47844 * 300.00398 * 12 10 9 34 34 H 1.09000 * 109.47140 * 180.02562 * 13 12 10 35 35 H 1.09002 * 109.47497 * 60.00450 * 13 12 10 36 36 H 0.97005 * 119.99239 * 335.00029 * 16 14 13 37 37 H 1.09000 * 109.47444 * 300.00712 * 21 19 17 38 38 H 1.09000 * 109.46920 * 60.00019 * 21 19 17 39 39 H 1.09007 * 109.47408 * 179.97438 * 22 21 19 40 40 H 1.08995 * 109.47422 * 299.99902 * 22 21 19 41 41 H 1.08995 * 109.47247 * 59.99584 * 23 22 21 42 42 H 1.08996 * 109.46895 * 180.02562 * 23 22 21 43 43 H 1.09007 * 109.47408 * 180.02562 * 27 24 23 44 44 H 1.09004 * 109.47437 * 59.99868 * 27 24 23 45 45 H 1.09002 * 109.47153 * 60.00231 * 28 14 13 46 46 H 1.08998 * 109.47533 * 179.97438 * 28 14 13 47 47 H 1.09002 * 109.47103 * 300.00247 * 29 28 14 48 48 H 1.08996 * 109.47747 * 179.97438 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0011 11 1 3.5645 -3.2070 -0.5874 12 6 5.4991 -2.2595 -0.6092 13 6 6.2643 -3.5843 -0.6075 14 6 6.4110 -4.0867 0.8302 15 1 6.9584 -3.3502 1.4184 16 7 7.1433 -5.3557 0.8318 17 6 7.8263 -5.7381 1.9289 18 8 7.8344 -5.0321 2.9150 19 6 8.5790 -7.0437 1.9307 20 1 7.8837 -7.8643 1.7540 21 6 9.2614 -7.2371 3.2863 22 6 10.0261 -8.5622 3.2880 23 6 11.0840 -8.5419 2.1828 24 6 10.4016 -8.3485 0.8272 25 9 11.3688 -8.3306 -0.1835 26 9 9.5097 -9.4020 0.5996 27 6 9.6369 -7.0234 0.8255 28 6 5.0241 -4.2981 1.4405 29 6 4.2588 -2.9733 1.4389 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3621 -0.0004 32 1 6.0467 -1.5233 -0.0208 33 1 5.3947 -1.9011 -1.6333 34 1 7.2526 -3.4336 -1.0419 35 1 5.7170 -4.3209 -1.1957 36 1 7.1364 -5.9205 0.0432 37 1 9.9566 -6.4165 3.4635 38 1 8.5078 -7.2511 4.0737 39 1 10.5127 -8.6998 4.2537 40 1 9.3312 -9.3830 3.1107 41 1 11.7789 -7.7211 2.3601 42 1 11.6285 -9.4862 2.1838 43 1 9.1503 -6.8858 -0.1402 44 1 10.3318 -6.2026 1.0028 45 1 4.4766 -5.0346 0.8523 46 1 5.1284 -4.6564 2.4646 47 1 4.8062 -2.2368 2.0271 48 1 3.2705 -3.1239 1.8732 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034731749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:37:53 Heat of formation + Delta-G solvation = -159.787294 kcal Electronic energy + Delta-G solvation = -29002.817989 eV Core-core repulsion = 24726.920885 eV Total energy + Delta-G solvation = -4275.897104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.41545 -47.39616 -40.51529 -38.52073 -37.24749 -35.04451 -33.23886 -31.96124 -30.82462 -30.50774 -30.39427 -27.79186 -24.69493 -23.43458 -23.00008 -22.47953 -21.24309 -20.70713 -20.28446 -19.61507 -18.16094 -17.50099 -17.33621 -16.83689 -16.66154 -16.28428 -15.65330 -15.10696 -14.72217 -14.59976 -14.41440 -14.21875 -13.93590 -13.81871 -13.71638 -13.56661 -13.28505 -13.19127 -12.95743 -12.76044 -12.66253 -12.28374 -12.21283 -11.99360 -11.81422 -11.73620 -11.36059 -11.25241 -11.17596 -10.96438 -10.90428 -10.87489 -10.67504 -10.27232 -10.19371 -9.85146 -9.82386 -9.56728 -9.07012 -8.88431 -7.25597 -5.76164 -3.11458 2.38007 2.89863 3.28689 3.38309 3.41364 3.46140 3.55465 3.77719 3.83349 4.31807 4.37872 4.44962 4.59813 4.60056 4.70728 4.77139 4.84219 4.88727 4.94465 5.08780 5.14358 5.28510 5.29904 5.35772 5.45238 5.49595 5.50142 5.53389 5.60181 5.68776 5.74544 5.77142 5.84570 5.90761 6.08390 6.15578 6.16724 6.33505 6.43667 6.50656 6.61875 6.88432 7.03953 7.32694 8.00538 8.03868 8.43186 9.21953 9.94682 10.14594 11.42257 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.029934 B = 0.002163 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.155004 B =12942.968296 C =13196.181013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.182 3.818 11 H 0.055 0.945 12 C -0.124 4.124 13 C -0.119 4.119 14 C 0.144 3.856 15 H 0.087 0.913 16 N -0.724 5.724 17 C 0.519 3.481 18 O -0.532 6.532 19 C -0.107 4.107 20 H 0.107 0.893 21 C -0.105 4.105 22 C -0.120 4.120 23 C -0.160 4.160 24 C 0.292 3.708 25 F -0.200 7.200 26 F -0.198 7.198 27 C -0.151 4.151 28 C -0.124 4.124 29 C -0.132 4.132 30 H 0.259 0.741 31 H 0.360 0.640 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.398 0.602 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.929 -19.450 2.563 31.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.392 5.392 10 C 0.072 3.928 11 H 0.073 0.927 12 C -0.163 4.163 13 C -0.157 4.157 14 C 0.040 3.960 15 H 0.105 0.895 16 N -0.375 5.375 17 C 0.304 3.696 18 O -0.408 6.408 19 C -0.128 4.128 20 H 0.125 0.875 21 C -0.143 4.143 22 C -0.157 4.157 23 C -0.198 4.198 24 C 0.256 3.744 25 F -0.181 7.181 26 F -0.179 7.179 27 C -0.189 4.189 28 C -0.163 4.163 29 C -0.173 4.173 30 H 0.069 0.931 31 H 0.193 0.807 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.232 0.768 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.120 0.880 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 24.672 -19.001 3.230 31.308 hybrid contribution 0.479 0.825 -0.564 1.109 sum 25.150 -18.176 2.666 31.145 Atomic orbital electron populations 1.69702 1.05106 1.25787 1.57681 1.24680 0.95239 0.97221 1.02141 0.86548 0.79247 0.85009 0.77718 1.21141 1.21809 1.20297 1.19075 0.80625 0.94655 1.42780 0.89241 1.42798 1.04003 1.02069 1.90290 1.20216 0.90210 0.89129 0.93202 0.92682 1.21791 0.96894 0.95845 1.01761 1.21737 1.00498 0.98500 0.94999 1.21138 0.92793 0.84628 0.97427 0.89458 1.46207 1.51550 1.23527 1.16185 1.20320 0.79051 0.87098 0.83137 1.90734 1.62420 1.54534 1.33128 1.21327 0.97318 0.97279 0.96896 0.87478 1.21447 1.00128 0.97430 0.95290 1.21554 0.97354 0.98472 0.98334 1.22566 0.99732 1.05322 0.92174 1.21017 0.80585 0.86135 0.86705 1.93026 1.64589 1.96950 1.63567 1.93007 1.69244 1.60092 1.95521 1.22511 0.99277 0.96278 1.00863 1.21888 0.94604 0.99207 1.00600 1.22187 1.00018 0.94764 1.00362 0.93101 0.80703 0.92112 0.91238 0.91813 0.91321 0.76832 0.90497 0.89970 0.89914 0.90692 0.88576 0.89311 0.88881 0.88033 0.92092 0.92230 0.92624 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.40 13.97 55.49 0.78 -28.62 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 22.16 27.73 -169.99 -4.71 17.45 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 7 C -0.24 -6.75 10.41 -15.06 -0.16 -6.91 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -17.48 4.92 -53.43 -0.26 -17.74 16 10 C 0.18 3.35 2.77 -67.93 -0.19 3.16 16 11 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 12 C -0.12 -1.80 5.39 -26.73 -0.14 -1.95 16 13 C -0.12 -1.32 5.39 -26.73 -0.14 -1.46 16 14 C 0.14 1.72 2.45 -67.93 -0.17 1.56 16 15 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 16 N -0.72 -6.81 4.97 -53.80 -0.27 -7.08 16 17 C 0.52 5.40 7.12 -10.99 -0.08 5.32 16 18 O -0.53 -7.74 15.65 5.56 0.09 -7.65 16 19 C -0.11 -0.76 2.41 -91.77 -0.22 -0.98 16 20 H 0.11 0.68 7.80 -51.93 -0.41 0.28 16 21 C -0.11 -0.71 4.49 -26.73 -0.12 -0.83 16 22 C -0.12 -0.59 5.80 -26.73 -0.16 -0.74 16 23 C -0.16 -0.80 5.45 -26.73 -0.15 -0.94 16 24 C 0.29 1.97 2.10 -26.73 -0.06 1.92 16 25 F -0.20 -1.70 17.06 2.25 0.04 -1.66 16 26 F -0.20 -1.62 16.03 2.25 0.04 -1.58 16 27 C -0.15 -0.91 4.63 -26.73 -0.12 -1.04 16 28 C -0.12 -1.73 5.49 -26.74 -0.15 -1.88 16 29 C -0.13 -2.30 5.50 -26.73 -0.15 -2.44 16 30 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 31 H 0.36 8.30 5.66 -40.82 -0.23 8.07 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.40 2.68 8.02 -40.82 -0.33 2.35 16 37 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 38 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.38 7.80 -51.93 -0.41 -0.02 16 41 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.49 7.56 -51.93 -0.39 0.09 16 44 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -33.40 378.76 -8.77 -42.17 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -8.08 Total: 6.26 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -2.09 Total: -7.24 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.24 Total: -53.44 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.09 Total: -7.65 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.07 Total: -3.24 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.45 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.40 -8.77 -42.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034731749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.621 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds