Wall clock time and date at job start Sat Apr 11 2020 02:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99837 * 2 1 4 4 H 1.48508 * 109.47019 * 269.99680 * 3 2 1 5 5 H 1.48497 * 109.47484 * 29.99613 * 3 2 1 6 6 H 1.48503 * 109.47281 * 149.99947 * 3 2 1 7 7 C 1.38813 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99640 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00109 * 179.97438 * 7 2 1 10 10 C 1.46497 * 119.99808 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.46915 * 35.00855 * 10 9 7 12 12 C 1.53002 * 109.46729 * 155.00140 * 10 9 7 13 13 C 1.52997 * 109.46978 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47415 * 300.00098 * 13 12 10 15 15 H 1.09002 * 109.47070 * 300.00053 * 14 13 12 16 16 N 1.46505 * 109.47411 * 179.97438 * 14 13 12 17 17 C 1.34769 * 119.99798 * 155.00053 * 16 14 13 18 18 O 1.21280 * 120.00742 * 0.02562 * 17 16 14 19 19 C 1.50705 * 119.99510 * 179.97438 * 17 16 14 20 20 H 1.08995 * 109.47765 * 299.99977 * 19 17 16 21 21 C 1.52999 * 109.47049 * 180.02562 * 19 17 16 22 22 C 1.52997 * 109.47350 * 180.02562 * 21 19 17 23 23 C 1.53002 * 109.47077 * 60.00211 * 22 21 19 24 24 C 1.52999 * 109.46858 * 300.00090 * 23 22 21 25 25 F 1.39901 * 109.47303 * 180.02562 * 24 23 22 26 26 F 1.39898 * 109.47293 * 299.99775 * 24 23 22 27 27 C 1.52997 * 109.47350 * 60.00077 * 24 23 22 28 28 C 1.52997 * 109.46817 * 59.99873 * 14 13 12 29 29 C 1.52992 * 109.47482 * 300.00014 * 28 14 13 30 30 H 0.96998 * 119.99905 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99779 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47097 * 60.00183 * 12 10 9 33 33 H 1.08998 * 109.47844 * 300.00398 * 12 10 9 34 34 H 1.09000 * 109.47140 * 180.02562 * 13 12 10 35 35 H 1.09002 * 109.47497 * 60.00450 * 13 12 10 36 36 H 0.97005 * 119.99239 * 335.00029 * 16 14 13 37 37 H 1.09000 * 109.47444 * 300.00712 * 21 19 17 38 38 H 1.09000 * 109.46920 * 60.00019 * 21 19 17 39 39 H 1.09007 * 109.47408 * 179.97438 * 22 21 19 40 40 H 1.08995 * 109.47422 * 299.99902 * 22 21 19 41 41 H 1.08995 * 109.47247 * 59.99584 * 23 22 21 42 42 H 1.08996 * 109.46895 * 180.02562 * 23 22 21 43 43 H 1.09007 * 109.47408 * 180.02562 * 27 24 23 44 44 H 1.09004 * 109.47437 * 59.99868 * 27 24 23 45 45 H 1.09002 * 109.47153 * 60.00231 * 28 14 13 46 46 H 1.08998 * 109.47533 * 179.97438 * 28 14 13 47 47 H 1.09002 * 109.47103 * 300.00247 * 29 28 14 48 48 H 1.08996 * 109.47747 * 179.97438 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0011 11 1 3.5645 -3.2070 -0.5874 12 6 5.4991 -2.2595 -0.6092 13 6 6.2643 -3.5843 -0.6075 14 6 6.4110 -4.0867 0.8302 15 1 6.9584 -3.3502 1.4184 16 7 7.1433 -5.3557 0.8318 17 6 7.8263 -5.7381 1.9289 18 8 7.8344 -5.0321 2.9150 19 6 8.5790 -7.0437 1.9307 20 1 7.8837 -7.8643 1.7540 21 6 9.2614 -7.2371 3.2863 22 6 10.0261 -8.5622 3.2880 23 6 11.0840 -8.5419 2.1828 24 6 10.4016 -8.3485 0.8272 25 9 11.3688 -8.3306 -0.1835 26 9 9.5097 -9.4020 0.5996 27 6 9.6369 -7.0234 0.8255 28 6 5.0241 -4.2981 1.4405 29 6 4.2588 -2.9733 1.4389 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3621 -0.0004 32 1 6.0467 -1.5233 -0.0208 33 1 5.3947 -1.9011 -1.6333 34 1 7.2526 -3.4336 -1.0419 35 1 5.7170 -4.3209 -1.1957 36 1 7.1364 -5.9205 0.0432 37 1 9.9566 -6.4165 3.4635 38 1 8.5078 -7.2511 4.0737 39 1 10.5127 -8.6998 4.2537 40 1 9.3312 -9.3830 3.1107 41 1 11.7789 -7.7211 2.3601 42 1 11.6285 -9.4862 2.1838 43 1 9.1503 -6.8858 -0.1402 44 1 10.3318 -6.2026 1.0028 45 1 4.4766 -5.0346 0.8523 46 1 5.1284 -4.6564 2.4646 47 1 4.8062 -2.2368 2.0271 48 1 3.2705 -3.1239 1.8732 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034731749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:37:52 Heat of formation + Delta-G solvation = -180.981060 kcal Electronic energy + Delta-G solvation = -29003.737019 eV Core-core repulsion = 24726.920885 eV Total energy + Delta-G solvation = -4276.816134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.97047 -47.96549 -41.36825 -39.62137 -37.98487 -36.46133 -34.70669 -33.13297 -32.17350 -31.70599 -30.89596 -29.18923 -25.69728 -24.73623 -23.75344 -23.62922 -22.41054 -21.55766 -21.21770 -20.71632 -19.57791 -18.70745 -17.90963 -17.46382 -17.32878 -17.23364 -16.75635 -16.25028 -16.16428 -15.50885 -15.21460 -15.14484 -14.99346 -14.92152 -14.62513 -14.42882 -14.36722 -14.29461 -13.93929 -13.67534 -13.58065 -13.37296 -13.26625 -13.11440 -12.91966 -12.76406 -12.43214 -12.33917 -12.23374 -12.06282 -11.98627 -11.83974 -11.79380 -11.75091 -11.47917 -11.44438 -11.21886 -10.90551 -10.69543 -10.03180 -9.29865 -8.01815 -5.34651 1.37688 1.41031 1.48294 1.57195 2.10697 2.48878 2.78068 3.08120 3.26977 3.28986 3.36088 3.57452 3.73645 3.79168 3.85573 3.88465 3.93306 4.16143 4.21366 4.25437 4.32121 4.33379 4.35476 4.43595 4.52840 4.58008 4.62236 4.70913 4.82002 4.85676 4.90981 4.92122 4.93939 5.09310 5.13132 5.14511 5.18819 5.22923 5.26063 5.36106 5.47990 5.52183 5.60212 5.78802 6.22999 6.56315 7.09212 7.25631 7.86505 8.04997 9.19887 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.029934 B = 0.002163 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.155004 B =12942.968296 C =13196.181013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.069 4.069 3 Si 0.956 3.044 4 H -0.276 1.276 5 H -0.299 1.299 6 H -0.254 1.254 7 C -0.226 4.226 8 H 0.055 0.945 9 N -0.754 5.754 10 C 0.175 3.825 11 H 0.046 0.954 12 C -0.117 4.117 13 C -0.107 4.107 14 C 0.152 3.848 15 H 0.070 0.930 16 N -0.711 5.711 17 C 0.518 3.482 18 O -0.576 6.576 19 C -0.097 4.097 20 H 0.118 0.882 21 C -0.105 4.105 22 C -0.112 4.112 23 C -0.158 4.158 24 C 0.287 3.713 25 F -0.210 7.210 26 F -0.207 7.207 27 C -0.147 4.147 28 C -0.114 4.114 29 C -0.125 4.125 30 H 0.257 0.743 31 H 0.364 0.636 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.415 0.585 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.071 0.929 46 H 0.048 0.952 47 H 0.048 0.952 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.114 -20.204 1.682 34.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.260 4.260 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.226 1.226 6 H -0.178 1.178 7 C -0.357 4.357 8 H 0.073 0.927 9 N -0.396 5.396 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.156 4.156 13 C -0.146 4.146 14 C 0.047 3.953 15 H 0.088 0.912 16 N -0.363 5.363 17 C 0.305 3.695 18 O -0.455 6.455 19 C -0.118 4.118 20 H 0.136 0.864 21 C -0.143 4.143 22 C -0.150 4.150 23 C -0.196 4.196 24 C 0.252 3.748 25 F -0.191 7.191 26 F -0.188 7.188 27 C -0.186 4.186 28 C -0.153 4.153 29 C -0.165 4.165 30 H 0.065 0.935 31 H 0.198 0.802 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.252 0.748 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.125 0.875 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.089 0.911 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 27.918 -19.816 2.321 34.314 hybrid contribution -0.551 0.942 -0.259 1.122 sum 27.367 -18.874 2.062 33.308 Atomic orbital electron populations 1.69889 1.07145 1.26572 1.60068 1.25524 0.96138 1.01311 1.02984 0.85392 0.78522 0.79599 0.78150 1.20161 1.22582 1.17825 1.19030 0.82755 0.93280 1.40645 0.92679 1.42850 1.02422 1.04147 1.90215 1.20482 0.92128 0.86899 0.93793 0.93595 1.21697 0.94292 0.98070 1.01502 1.21663 1.01722 0.96783 0.94410 1.20864 0.91229 0.85501 0.97714 0.91159 1.46024 1.50649 1.22814 1.16785 1.20873 0.78601 0.87608 0.82398 1.90722 1.63961 1.56072 1.34770 1.21273 0.97523 0.95421 0.97617 0.86387 1.21432 0.99808 0.98338 0.94701 1.21506 0.97212 0.97152 0.99111 1.22598 0.99768 1.06258 0.90991 1.21243 0.80470 0.86025 0.87110 1.93007 1.64992 1.96982 1.64167 1.92991 1.69578 1.60596 1.95617 1.22496 0.99029 0.96158 1.00873 1.21765 0.95820 0.97174 1.00536 1.22008 0.98681 0.96608 0.99248 0.93457 0.80247 0.91897 0.90715 0.88872 0.89765 0.74801 0.91132 0.91342 0.88571 0.90708 0.87506 0.88525 0.87689 0.87498 0.91079 0.93303 0.93335 0.94629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.94 13.97 21.65 0.30 -63.64 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.96 45.98 27.73 68.60 1.90 47.88 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 6 H -0.25 -11.07 6.52 99.48 0.65 -10.42 16 7 C -0.23 -12.94 10.41 84.03 0.87 -12.07 16 8 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 9 N -0.75 -34.95 4.92 -322.94 -1.59 -36.54 16 10 C 0.17 6.33 2.77 44.99 0.12 6.46 16 11 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 12 C -0.12 -3.10 5.39 30.59 0.16 -2.93 16 13 C -0.11 -2.00 5.39 30.59 0.16 -1.84 16 14 C 0.15 3.31 2.45 44.99 0.11 3.42 16 15 H 0.07 1.84 7.58 -2.39 -0.02 1.83 16 16 N -0.71 -11.49 4.97 -442.53 -2.20 -13.69 16 17 C 0.52 9.90 7.12 87.66 0.62 10.52 16 18 O -0.58 -16.40 15.65 -3.03 -0.05 -16.45 16 19 C -0.10 -1.18 2.41 -11.54 -0.03 -1.20 16 20 H 0.12 1.22 7.80 -2.39 -0.02 1.20 16 21 C -0.10 -1.28 4.49 30.59 0.14 -1.14 16 22 C -0.11 -0.87 5.80 30.59 0.18 -0.69 16 23 C -0.16 -1.20 5.45 30.59 0.17 -1.03 16 24 C 0.29 3.20 2.10 30.59 0.06 3.26 16 25 F -0.21 -3.11 17.06 44.97 0.77 -2.34 16 26 F -0.21 -2.93 16.03 44.97 0.72 -2.20 16 27 C -0.15 -1.38 4.63 30.59 0.14 -1.24 16 28 C -0.11 -3.09 5.49 30.59 0.17 -2.92 16 29 C -0.12 -4.37 5.50 30.59 0.17 -4.20 16 30 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 31 H 0.36 16.23 5.66 -92.71 -0.52 15.70 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.41 4.05 8.02 -92.70 -0.74 3.30 16 37 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 38 H 0.07 1.03 8.10 -2.39 -0.02 1.01 16 39 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 40 H 0.07 0.61 7.80 -2.39 -0.02 0.59 16 41 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.10 0.74 7.56 -2.38 -0.02 0.72 16 44 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 45 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -74.98 378.76 3.02 -71.97 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -0.36 Total: 24.26 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 3.53 Total: -9.23 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -3.49 Total: -113.87 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.05 Total: -16.45 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 1.49 Total: -4.55 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.90 Total: 47.88 kcal Total: -74.98 3.02 -71.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034731749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.016 kcal (2) G-P(sol) polarization free energy of solvation -74.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds