Wall clock time and date at job start Sat Apr 11 2020 02:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46842 * 111.00257 * 45.73191 * 11 10 9 13 13 C 1.53057 * 109.50911 * 185.90772 * 12 11 10 14 14 C 1.52987 * 109.27869 * 300.98298 * 13 12 11 15 15 C 1.53220 * 109.49723 * 297.46534 * 14 13 12 16 16 C 1.53083 * 108.45583 * 172.64429 * 15 14 13 17 17 C 1.50173 * 109.88670 * 48.78184 * 16 15 14 18 18 O 1.21289 * 118.22248 * 162.30246 * 17 16 15 19 19 N 1.33349 * 123.55438 * 342.32384 * 17 16 15 20 20 C 1.46503 * 117.96017 * 182.32074 * 19 17 16 21 21 C 1.52992 * 109.47172 * 89.99872 * 20 19 17 22 22 F 1.39899 * 109.47204 * 299.99821 * 21 20 19 23 23 F 1.39900 * 109.47207 * 60.00397 * 21 20 19 24 24 C 1.45780 * 124.08527 * 2.29770 * 19 17 16 25 25 C 1.52986 * 109.39095 * 57.46873 * 14 13 12 26 26 C 1.46846 * 111.00009 * 170.00096 * 11 10 9 27 27 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 29 29 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 30 30 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 31 31 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 32 32 H 1.09005 * 109.46344 * 305.91467 * 12 11 10 33 33 H 1.08991 * 109.46759 * 65.89376 * 12 11 10 34 34 H 1.09005 * 109.50413 * 181.03596 * 13 12 11 35 35 H 1.09000 * 109.53707 * 60.94419 * 13 12 11 36 36 H 1.08997 * 109.64364 * 292.34213 * 15 14 13 37 37 H 1.09010 * 109.63838 * 52.95938 * 15 14 13 38 38 H 1.08995 * 109.40123 * 168.90899 * 16 15 14 39 39 H 1.08995 * 109.40235 * 288.74111 * 16 15 14 40 40 H 1.08998 * 109.46883 * 210.00114 * 20 19 17 41 41 H 1.08998 * 109.46672 * 329.99934 * 20 19 17 42 42 H 1.09001 * 109.47204 * 180.02562 * 21 20 19 43 43 H 1.09005 * 109.27303 * 220.81814 * 24 19 17 44 44 H 1.09002 * 109.27297 * 101.34494 * 24 19 17 45 45 H 1.09001 * 109.50507 * 182.58711 * 25 14 13 46 46 H 1.09001 * 109.53540 * 62.49684 * 25 14 13 47 47 H 1.09003 * 109.46094 * 294.09997 * 26 11 10 48 48 H 1.08997 * 109.46588 * 54.08635 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.4191 -4.9069 -0.9988 13 6 -0.4120 -6.1862 -0.8750 14 6 0.4890 -7.3991 -1.1146 15 6 1.0458 -7.3487 -2.5412 16 6 2.0830 -8.4639 -2.6963 17 6 1.5197 -9.7597 -2.1876 18 8 2.0608 -10.7917 -2.5241 19 7 0.4566 -9.8372 -1.3863 20 6 0.0421 -11.1633 -0.9215 21 6 0.7558 -11.4895 0.3918 22 9 2.1395 -11.4792 0.1856 23 9 0.4207 -10.5319 1.3551 24 6 -0.3186 -8.6847 -0.9436 25 6 1.6458 -7.3781 -0.1138 26 6 2.4167 -6.0640 -0.2598 27 1 -0.4850 0.8401 -0.0004 28 1 0.6242 -2.5609 0.8844 29 1 0.6244 -2.5529 -0.8956 30 1 2.8718 -3.6005 -0.9002 31 1 2.8717 -3.6084 0.8798 32 1 -0.2164 -4.0413 -0.8115 33 1 0.8362 -4.8406 -2.0036 34 1 -1.2111 -6.1742 -1.6163 35 1 -0.8436 -6.2452 0.1242 36 1 0.2367 -7.4988 -3.2559 37 1 1.5184 -6.3820 -2.7160 38 1 2.3446 -8.5712 -3.7489 39 1 2.9759 -8.2098 -2.1253 40 1 -1.0360 -11.1713 -0.7609 41 1 0.3032 -11.9093 -1.6720 42 1 0.4478 -12.4763 0.7375 43 1 -0.5791 -8.8086 0.1076 44 1 -1.2321 -8.6171 -1.5345 45 1 2.3141 -8.2161 -0.3123 46 1 1.2526 -7.4587 0.8996 47 1 2.8243 -5.9921 -1.2682 48 1 3.2313 -6.0384 0.4640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040721.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:37:10 Heat of formation + Delta-G solvation = -141.244627 kcal Electronic energy + Delta-G solvation = -30370.249589 eV Core-core repulsion = 26095.156555 eV Total energy + Delta-G solvation = -4275.093033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.12684 -47.12873 -41.27049 -39.01289 -36.44078 -35.01232 -33.06789 -31.75003 -30.83869 -30.09149 -29.06873 -26.92926 -24.80477 -24.28683 -23.52102 -23.07024 -22.12478 -20.22798 -19.32894 -18.06802 -17.77214 -17.54024 -17.11997 -16.61228 -16.44658 -16.27036 -15.49791 -14.96696 -14.75288 -14.56985 -14.39659 -14.21615 -14.10747 -13.96065 -13.54847 -13.48383 -13.31672 -12.95703 -12.74945 -12.61229 -12.39456 -12.30087 -12.06421 -11.83886 -11.80641 -11.61141 -11.33540 -11.01671 -11.00033 -10.92589 -10.61436 -10.53659 -10.28069 -10.16844 -9.90364 -9.76871 -9.30371 -9.09647 -9.02852 -8.35641 -7.65536 -6.02384 -4.04460 2.40953 2.58822 3.32137 3.36580 3.39089 3.55194 3.94529 4.08277 4.30196 4.40895 4.43036 4.46388 4.52082 4.55665 4.61000 4.96948 5.03090 5.09094 5.17220 5.23494 5.30026 5.33724 5.37259 5.45194 5.52879 5.62277 5.64210 5.78433 5.84691 5.87360 5.90689 6.01601 6.12735 6.15387 6.28566 6.30977 6.39697 6.53318 6.58925 6.92157 7.12807 7.50498 7.61298 7.78643 7.84062 7.91945 8.03154 8.41250 9.01928 9.59319 11.08911 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.026141 B = 0.002612 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.851055 B =10715.241560 C =10861.287917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.022 3.978 10 C 0.063 3.937 11 N -0.537 5.537 12 C 0.051 3.949 13 C -0.100 4.100 14 C -0.070 4.070 15 C -0.119 4.119 16 C -0.133 4.133 17 C 0.523 3.477 18 O -0.550 6.550 19 N -0.600 5.600 20 C 0.058 3.942 21 C 0.245 3.755 22 F -0.196 7.196 23 F -0.203 7.203 24 C 0.120 3.880 25 C -0.103 4.103 26 C 0.055 3.945 27 H 0.261 0.739 28 H 0.025 0.975 29 H 0.020 0.980 30 H 0.018 0.982 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.029 0.971 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.073 0.927 47 H 0.029 0.971 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.094 -23.674 -2.900 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.064 4.064 11 N -0.262 5.262 12 C -0.077 4.077 13 C -0.139 4.139 14 C -0.070 4.070 15 C -0.156 4.156 16 C -0.172 4.172 17 C 0.313 3.687 18 O -0.428 6.428 19 N -0.332 5.332 20 C -0.067 4.067 21 C 0.190 3.810 22 F -0.177 7.177 23 F -0.184 7.184 24 C -0.002 4.002 25 C -0.141 4.141 26 C -0.073 4.073 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.047 0.953 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.132 -24.099 -2.619 24.442 hybrid contribution 0.882 1.174 -0.618 1.593 sum -2.250 -22.925 -3.237 23.261 Atomic orbital electron populations 1.69949 1.06005 1.26725 1.50630 1.24982 0.94841 0.99169 0.95259 0.86658 0.79589 0.83127 0.78619 1.20315 1.21276 1.20206 1.21158 0.92983 0.91055 1.50940 0.92842 1.19230 0.94084 0.90479 0.97719 1.22306 0.96998 0.88151 0.98953 1.62015 1.11563 1.03518 1.49130 1.22209 0.94215 0.97963 0.93306 1.21568 0.96979 0.92821 1.02504 1.20810 0.96520 0.94126 0.95590 1.21847 0.98389 0.99163 0.96236 1.21687 1.00381 0.91818 1.03363 1.20262 0.79213 0.91865 0.77374 1.90708 1.58237 1.35841 1.57989 1.47206 1.30413 1.06860 1.48755 1.22634 1.00439 0.88264 0.95335 1.22439 0.77991 0.92204 0.88377 1.93037 1.32029 1.97280 1.95356 1.92992 1.92053 1.67557 1.65801 1.21662 0.93646 0.84010 1.00882 1.21639 0.96272 0.96912 0.99270 1.22051 0.95154 0.90939 0.99178 0.92931 0.95708 0.96169 0.96334 0.91992 0.88593 0.95249 0.91536 0.90650 0.91158 0.89710 0.88309 0.87911 0.87505 0.86609 0.86871 0.89734 0.91349 0.92201 0.90788 0.95337 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.55 4.22 -27.88 -0.12 0.44 16 10 C 0.06 1.29 5.21 -3.83 -0.02 1.27 16 11 N -0.54 -9.21 4.80 -234.65 -1.13 -10.34 16 12 C 0.05 0.80 4.61 -3.83 -0.02 0.78 16 13 C -0.10 -1.19 4.88 -26.71 -0.13 -1.32 16 14 C -0.07 -0.73 0.52 -154.52 -0.08 -0.81 16 15 C -0.12 -1.19 4.32 -26.57 -0.11 -1.31 16 16 C -0.13 -1.38 5.39 -28.10 -0.15 -1.53 16 17 C 0.52 6.22 6.23 -11.87 -0.07 6.15 16 18 O -0.55 -8.23 15.47 5.55 0.09 -8.14 16 19 N -0.60 -5.78 2.65 -175.03 -0.46 -6.24 16 20 C 0.06 0.42 5.58 -4.04 -0.02 0.40 16 21 C 0.24 1.97 5.60 37.15 0.21 2.18 16 22 F -0.20 -2.38 16.11 2.25 0.04 -2.34 16 23 F -0.20 -2.01 15.91 2.25 0.04 -1.97 16 24 C 0.12 1.05 4.87 -4.54 -0.02 1.03 16 25 C -0.10 -1.25 4.32 -26.71 -0.12 -1.37 16 26 C 0.06 0.78 5.18 -3.82 -0.02 0.76 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.02 0.52 6.21 -51.93 -0.32 0.20 16 30 H 0.02 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.10 1.78 5.81 -51.93 -0.30 1.48 16 33 H 0.03 0.46 6.38 -51.93 -0.33 0.13 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 37 H 0.08 0.95 5.01 -51.92 -0.26 0.69 16 38 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.10 1.10 6.83 -51.93 -0.35 0.74 16 40 H 0.11 0.45 8.01 -51.93 -0.42 0.04 16 41 H 0.12 0.90 7.13 -51.93 -0.37 0.53 16 42 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.74 6.85 -51.93 -0.36 0.38 16 44 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 45 H 0.06 0.73 5.72 -51.93 -0.30 0.44 16 46 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.03 0.40 6.62 -51.93 -0.34 0.05 16 48 H 0.07 1.00 8.12 -51.93 -0.42 0.57 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -32.76 364.66 -8.85 -41.61 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -7.54 Total: -2.24 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -1.09 Total: -6.64 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: -0.85 Total: -42.20 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.09 Total: -8.14 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.07 Total: -4.31 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.76 -8.85 -41.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040721.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.637 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds