Wall clock time and date at job start Sat Apr 11 2020 02:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46842 * 111.00257 * 45.73191 * 11 10 9 13 13 C 1.53057 * 109.50911 * 185.90772 * 12 11 10 14 14 C 1.52987 * 109.27869 * 300.98298 * 13 12 11 15 15 C 1.53220 * 109.49723 * 297.46534 * 14 13 12 16 16 C 1.53083 * 108.45583 * 172.64429 * 15 14 13 17 17 C 1.50173 * 109.88670 * 48.78184 * 16 15 14 18 18 O 1.21289 * 118.22248 * 162.30246 * 17 16 15 19 19 N 1.33349 * 123.55438 * 342.32384 * 17 16 15 20 20 C 1.46503 * 117.96017 * 182.32074 * 19 17 16 21 21 C 1.52992 * 109.47172 * 89.99872 * 20 19 17 22 22 F 1.39899 * 109.47204 * 299.99821 * 21 20 19 23 23 F 1.39900 * 109.47207 * 60.00397 * 21 20 19 24 24 C 1.45780 * 124.08527 * 2.29770 * 19 17 16 25 25 C 1.52986 * 109.39095 * 57.46873 * 14 13 12 26 26 C 1.46846 * 111.00009 * 170.00096 * 11 10 9 27 27 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 29 29 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 30 30 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 31 31 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 32 32 H 1.09005 * 109.46344 * 305.91467 * 12 11 10 33 33 H 1.08991 * 109.46759 * 65.89376 * 12 11 10 34 34 H 1.09005 * 109.50413 * 181.03596 * 13 12 11 35 35 H 1.09000 * 109.53707 * 60.94419 * 13 12 11 36 36 H 1.08997 * 109.64364 * 292.34213 * 15 14 13 37 37 H 1.09010 * 109.63838 * 52.95938 * 15 14 13 38 38 H 1.08995 * 109.40123 * 168.90899 * 16 15 14 39 39 H 1.08995 * 109.40235 * 288.74111 * 16 15 14 40 40 H 1.08998 * 109.46883 * 210.00114 * 20 19 17 41 41 H 1.08998 * 109.46672 * 329.99934 * 20 19 17 42 42 H 1.09001 * 109.47204 * 180.02562 * 21 20 19 43 43 H 1.09005 * 109.27303 * 220.81814 * 24 19 17 44 44 H 1.09002 * 109.27297 * 101.34494 * 24 19 17 45 45 H 1.09001 * 109.50507 * 182.58711 * 25 14 13 46 46 H 1.09001 * 109.53540 * 62.49684 * 25 14 13 47 47 H 1.09003 * 109.46094 * 294.09997 * 26 11 10 48 48 H 1.08997 * 109.46588 * 54.08635 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.4191 -4.9069 -0.9988 13 6 -0.4120 -6.1862 -0.8750 14 6 0.4890 -7.3991 -1.1146 15 6 1.0458 -7.3487 -2.5412 16 6 2.0830 -8.4639 -2.6963 17 6 1.5197 -9.7597 -2.1876 18 8 2.0608 -10.7917 -2.5241 19 7 0.4566 -9.8372 -1.3863 20 6 0.0421 -11.1633 -0.9215 21 6 0.7558 -11.4895 0.3918 22 9 2.1395 -11.4792 0.1856 23 9 0.4207 -10.5319 1.3551 24 6 -0.3186 -8.6847 -0.9436 25 6 1.6458 -7.3781 -0.1138 26 6 2.4167 -6.0640 -0.2598 27 1 -0.4850 0.8401 -0.0004 28 1 0.6242 -2.5609 0.8844 29 1 0.6244 -2.5529 -0.8956 30 1 2.8718 -3.6005 -0.9002 31 1 2.8717 -3.6084 0.8798 32 1 -0.2164 -4.0413 -0.8115 33 1 0.8362 -4.8406 -2.0036 34 1 -1.2111 -6.1742 -1.6163 35 1 -0.8436 -6.2452 0.1242 36 1 0.2367 -7.4988 -3.2559 37 1 1.5184 -6.3820 -2.7160 38 1 2.3446 -8.5712 -3.7489 39 1 2.9759 -8.2098 -2.1253 40 1 -1.0360 -11.1713 -0.7609 41 1 0.3032 -11.9093 -1.6720 42 1 0.4478 -12.4763 0.7375 43 1 -0.5791 -8.8086 0.1076 44 1 -1.2321 -8.6171 -1.5345 45 1 2.3141 -8.2161 -0.3123 46 1 1.2526 -7.4587 0.8996 47 1 2.8243 -5.9921 -1.2682 48 1 3.2313 -6.0384 0.4640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040721.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:37:09 Heat of formation + Delta-G solvation = -161.947251 kcal Electronic energy + Delta-G solvation = -30371.147322 eV Core-core repulsion = 26095.156555 eV Total energy + Delta-G solvation = -4275.990767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.83053 -47.86215 -42.16473 -40.10162 -37.59771 -36.04768 -34.93621 -32.90093 -32.15298 -30.96202 -30.37123 -28.16863 -26.00310 -25.59762 -24.52670 -24.05384 -23.31736 -21.73261 -20.41483 -18.92132 -18.62461 -18.45081 -18.27700 -17.87445 -17.31074 -17.12576 -16.62036 -16.55597 -15.99670 -15.82434 -15.56424 -15.41582 -15.16347 -14.81860 -14.67960 -14.34961 -14.29832 -14.20362 -13.93728 -13.55639 -13.47824 -13.26170 -13.22674 -13.09392 -12.92458 -12.80137 -12.75127 -12.42313 -12.31586 -12.14124 -12.07511 -11.87771 -11.65852 -11.41574 -11.28098 -11.15383 -10.92442 -10.69218 -10.51080 -9.78224 -9.06754 -8.19411 -6.29897 1.40596 1.43047 1.50940 1.54502 1.87426 2.40789 2.99896 3.10394 3.14035 3.41413 3.44019 3.54838 3.62352 3.69705 3.73764 3.91591 4.09433 4.19818 4.26063 4.32610 4.41382 4.44181 4.50066 4.53152 4.58875 4.64046 4.65010 4.71386 4.75467 4.76711 4.87186 4.97233 5.00056 5.06048 5.07189 5.15439 5.25062 5.31422 5.36143 5.42776 5.47837 5.70243 5.80582 6.13081 6.32613 6.35682 6.40800 6.86311 7.07277 7.38731 8.92038 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.026141 B = 0.002612 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.851055 B =10715.241560 C =10861.287917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.033 3.967 10 C 0.078 3.922 11 N -0.544 5.544 12 C 0.052 3.948 13 C -0.090 4.090 14 C -0.065 4.065 15 C -0.112 4.112 16 C -0.131 4.131 17 C 0.519 3.481 18 O -0.587 6.587 19 N -0.597 5.597 20 C 0.055 3.945 21 C 0.234 3.766 22 F -0.223 7.223 23 F -0.214 7.214 24 C 0.124 3.876 25 C -0.093 4.093 26 C 0.056 3.944 27 H 0.264 0.736 28 H -0.007 1.007 29 H 0.005 0.995 30 H 0.018 0.982 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.145 0.855 41 H 0.112 0.888 42 H 0.157 0.843 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.035 0.965 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.678 -24.716 -3.319 25.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.074 0.926 9 C -0.004 4.004 10 C -0.050 4.050 11 N -0.269 5.269 12 C -0.076 4.076 13 C -0.128 4.128 14 C -0.066 4.066 15 C -0.149 4.149 16 C -0.170 4.170 17 C 0.309 3.691 18 O -0.468 6.468 19 N -0.328 5.328 20 C -0.069 4.069 21 C 0.179 3.821 22 F -0.205 7.205 23 F -0.196 7.196 24 C 0.002 3.998 25 C -0.130 4.130 26 C -0.072 4.072 27 H 0.073 0.927 28 H 0.011 0.989 29 H 0.024 0.976 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.163 0.837 41 H 0.130 0.870 42 H 0.174 0.826 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.053 0.947 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.731 -25.151 -3.022 25.605 hybrid contribution 1.032 1.475 -0.460 1.858 sum -2.700 -23.675 -3.482 24.082 Atomic orbital electron populations 1.70078 1.07612 1.27804 1.51318 1.25891 0.95752 1.03051 0.94659 0.85550 0.78340 0.78362 0.79081 1.19288 1.20712 1.19380 1.21609 0.93435 0.92499 1.51034 0.92553 1.19030 0.94192 0.91763 0.95397 1.21958 0.95816 0.88569 0.98646 1.61976 1.12076 1.02710 1.50182 1.22169 0.93638 0.98937 0.92876 1.21476 0.96995 0.91091 1.03248 1.20732 0.95799 0.94699 0.95352 1.21786 0.98699 0.98277 0.96181 1.21665 1.00189 0.91429 1.03760 1.20446 0.79506 0.91638 0.77503 1.90692 1.59508 1.36979 1.59583 1.47256 1.29669 1.08149 1.47772 1.22890 1.02499 0.86807 0.94686 1.23024 0.76478 0.93887 0.88676 1.92983 1.34529 1.97443 1.95543 1.92965 1.91985 1.68331 1.66307 1.21684 0.93806 0.82527 1.01791 1.21524 0.96704 0.95362 0.99454 1.22097 0.94931 0.90748 0.99404 0.92730 0.98866 0.97642 0.96409 0.92467 0.92107 0.95099 0.89084 0.90896 0.89437 0.90938 0.87571 0.88521 0.83740 0.86993 0.82580 0.89200 0.88659 0.92070 0.91577 0.94733 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.76 13.29 21.45 0.28 -55.48 16 2 C 0.00 0.27 5.46 84.66 0.46 0.74 16 3 Si 0.96 44.06 29.54 68.60 2.03 46.08 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -31.12 9.11 25.60 0.23 -30.89 16 8 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 9 C 0.03 1.75 4.22 29.85 0.13 1.87 16 10 C 0.08 3.28 5.21 86.30 0.45 3.73 16 11 N -0.54 -18.91 4.80 -896.31 -4.30 -23.22 16 12 C 0.05 1.63 4.61 86.33 0.40 2.03 16 13 C -0.09 -1.98 4.88 30.61 0.15 -1.83 16 14 C -0.07 -1.23 0.52 -52.19 -0.03 -1.26 16 15 C -0.11 -2.02 4.32 30.70 0.13 -1.89 16 16 C -0.13 -2.55 5.39 29.71 0.16 -2.39 16 17 C 0.52 11.57 6.23 87.71 0.55 12.12 16 18 O -0.59 -17.13 15.47 -3.06 -0.05 -17.18 16 19 N -0.60 -10.01 2.65 -826.85 -2.19 -12.20 16 20 C 0.05 0.65 5.58 86.38 0.48 1.13 16 21 C 0.23 3.22 5.60 71.98 0.40 3.62 16 22 F -0.22 -5.24 16.11 44.97 0.72 -4.51 16 23 F -0.21 -3.79 15.91 44.97 0.72 -3.08 16 24 C 0.12 1.77 4.87 86.44 0.42 2.19 16 25 C -0.09 -2.15 4.32 30.61 0.13 -2.02 16 26 C 0.06 1.57 5.18 86.33 0.45 2.02 16 27 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 28 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 29 H 0.01 0.29 6.21 -2.39 -0.01 0.28 16 30 H 0.02 0.74 8.08 -2.38 -0.02 0.73 16 31 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.06 2.36 5.81 -2.38 -0.01 2.34 16 33 H 0.03 0.96 6.38 -2.39 -0.02 0.95 16 34 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.09 1.31 8.13 -2.39 -0.02 1.29 16 37 H 0.07 1.52 5.01 -2.38 -0.01 1.51 16 38 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.10 2.00 6.83 -2.39 -0.02 1.98 16 40 H 0.14 0.59 8.01 -2.39 -0.02 0.57 16 41 H 0.11 1.49 7.13 -2.39 -0.02 1.47 16 42 H 0.16 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.09 1.27 6.85 -2.38 -0.02 1.26 16 44 H 0.10 0.95 8.11 -2.39 -0.02 0.93 16 45 H 0.06 1.44 5.72 -2.39 -0.01 1.42 16 46 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.03 0.94 6.62 -2.39 -0.02 0.93 16 48 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 Total: -1.00 -72.98 364.66 2.69 -70.30 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.96 Total: 10.09 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 4.52 Total: -10.81 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -6.21 Total: -90.89 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.05 Total: -17.18 kcal Atomic # 9 Polarization: -9.03 SS G_CDS: 1.44 Total: -7.59 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -72.98 2.69 -70.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040721.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.650 kcal (2) G-P(sol) polarization free energy of solvation -72.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds