Wall clock time and date at job start Sat Apr 11 2020 02:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 119.99644 * 2 1 4 4 O 1.21279 * 120.00174 * 5.32925 * 3 2 1 5 5 C 1.50701 * 119.99752 * 185.31876 * 3 2 1 6 6 C 1.53001 * 109.47554 * 297.76073 * 5 3 2 7 7 C 1.52999 * 109.47112 * 57.76244 * 5 3 2 8 8 C 1.52996 * 109.47620 * 179.97438 * 7 5 3 9 9 C 1.52995 * 109.47265 * 300.00677 * 8 7 5 10 10 F 1.39908 * 109.46854 * 299.99266 * 9 8 7 11 11 F 1.39902 * 109.47456 * 179.97438 * 9 8 7 12 12 C 1.52999 * 109.47714 * 59.99271 * 9 8 7 13 13 C 1.53001 * 109.46977 * 300.00333 * 12 9 8 14 14 C 1.46506 * 120.00225 * 180.02562 * 2 1 3 15 15 H 1.09001 * 110.63925 * 177.93019 * 14 2 1 16 16 C 1.55160 * 110.71793 * 301.26477 * 14 2 1 17 17 C 1.54904 * 101.57858 * 153.86786 * 16 14 2 18 18 N 1.47431 * 104.83185 * 322.98672 * 17 16 14 19 19 C 1.36936 * 125.64761 * 204.08985 * 18 17 16 20 20 H 1.07997 * 119.99881 * 180.02562 * 19 18 17 21 21 C 1.38817 * 120.00004 * 0.05229 * 19 18 17 22 22 N 1.31610 * 119.99993 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99727 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47258 * 89.99587 * 23 21 19 25 25 H 1.48505 * 109.46692 * 210.00070 * 23 21 19 26 26 H 1.48501 * 109.47023 * 329.99645 * 23 21 19 27 27 C 1.47018 * 108.70358 * 24.13252 * 18 17 16 28 28 H 1.08999 * 109.46744 * 84.59140 * 1 2 3 29 29 H 1.09000 * 109.46691 * 204.58874 * 1 2 3 30 30 H 1.08995 * 109.47459 * 324.58757 * 1 2 3 31 31 H 1.08998 * 109.46969 * 47.21006 * 6 5 3 32 32 H 1.09002 * 109.46980 * 287.20656 * 6 5 3 33 33 H 1.09000 * 109.46998 * 167.20555 * 6 5 3 34 34 H 1.08999 * 109.46991 * 299.99826 * 7 5 3 35 35 H 1.09006 * 109.46962 * 59.99254 * 7 5 3 36 36 H 1.08997 * 109.47294 * 179.97438 * 8 7 5 37 37 H 1.09008 * 109.46642 * 60.00250 * 8 7 5 38 38 H 1.08999 * 109.47351 * 180.02562 * 12 9 8 39 39 H 1.08995 * 109.46638 * 59.99894 * 12 9 8 40 40 H 1.08998 * 109.47282 * 300.00031 * 13 12 9 41 41 H 1.08997 * 109.46921 * 179.97438 * 13 12 9 42 42 H 1.09003 * 111.00221 * 271.94340 * 16 14 2 43 43 H 1.09000 * 111.00348 * 35.79255 * 16 14 2 44 44 H 1.09007 * 110.36462 * 204.15366 * 17 16 14 45 45 H 1.09000 * 110.37252 * 81.82907 * 17 16 14 46 46 H 0.97006 * 120.00242 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.88627 * 239.52161 * 27 18 17 48 48 H 1.08995 * 110.01256 * 118.42494 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5363 2.2153 0.0975 5 6 3.6410 1.1701 -0.1210 6 6 4.2507 0.4407 1.0779 7 6 4.0499 0.4590 -1.4125 8 6 5.5749 0.4623 -1.5357 9 6 6.0810 1.9058 -1.5661 10 9 5.5231 2.5726 -2.6623 11 9 7.4755 1.9090 -1.6782 12 6 5.6721 2.6171 -0.2746 13 6 4.1470 2.6137 -0.1515 14 6 2.1976 -1.2687 -0.0006 15 1 3.2725 -1.0917 -0.0373 16 6 1.8198 -2.1213 1.2396 17 6 2.1031 -3.5559 0.7286 18 7 1.6907 -3.5408 -0.6867 19 6 1.3155 -4.6345 -1.4204 20 1 1.0298 -4.5183 -2.4554 21 6 1.3020 -5.8925 -0.8336 22 7 1.6503 -6.0341 0.4276 23 14 0.7896 -7.3843 -1.8343 24 1 1.9843 -7.9755 -2.4889 25 1 0.1670 -8.3914 -0.9380 26 1 -0.1899 -6.9719 -2.8715 27 6 1.7498 -2.1572 -1.1803 28 1 -0.3633 0.0969 -1.0231 29 1 -0.3633 -0.9345 0.4276 30 1 -0.3634 0.8375 0.5954 31 1 3.7263 -0.5019 1.2348 32 1 4.1552 1.0623 1.9682 33 1 5.3049 0.2422 0.8846 34 1 3.6891 -0.5694 -1.3909 35 1 3.6155 0.9786 -2.2666 36 1 5.8662 -0.0447 -2.4555 37 1 6.0096 -0.0572 -0.6816 38 1 6.0322 3.6456 -0.2965 39 1 6.1066 2.0976 0.5794 40 1 3.7124 3.1331 -1.0056 41 1 3.8557 3.1200 0.7688 42 1 2.4559 -1.8767 2.0903 43 1 0.7668 -1.9975 1.4927 44 1 1.5125 -4.2814 1.2881 45 1 3.1654 -3.7854 0.8118 46 1 1.6412 -6.9132 0.8376 47 1 0.7647 -1.8447 -1.5266 48 1 2.4700 -2.0822 -1.9949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033207940.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:39:20 Heat of formation + Delta-G solvation = -95.498371 kcal Electronic energy + Delta-G solvation = -31102.890892 eV Core-core repulsion = 26829.781565 eV Total energy + Delta-G solvation = -4273.109327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.09207 -47.07315 -41.04706 -37.93500 -37.46076 -34.73581 -32.06175 -31.80825 -31.41782 -29.35997 -27.65267 -27.05068 -26.78155 -24.59495 -23.46332 -22.95079 -20.92763 -20.35330 -19.62994 -18.90563 -17.52531 -17.17100 -17.00793 -16.52133 -16.41564 -15.83894 -15.30502 -14.93820 -14.66679 -14.45687 -14.16393 -13.96532 -13.84206 -13.54609 -13.36322 -13.22190 -12.95618 -12.83173 -12.65146 -12.47675 -12.24846 -12.12848 -11.90551 -11.81990 -11.79312 -11.64817 -11.36310 -11.25075 -11.06682 -10.99722 -10.87598 -10.71917 -10.43844 -10.25737 -10.18460 -9.88536 -9.74732 -9.42121 -8.75626 -8.40967 -6.96334 -5.75823 -3.18382 2.67395 3.09185 3.34243 3.40079 3.41397 3.59230 3.87366 4.03349 4.16892 4.40860 4.49717 4.59117 4.67656 4.80655 4.88360 5.01059 5.07740 5.19412 5.22967 5.34949 5.40962 5.41993 5.49745 5.49995 5.54145 5.58360 5.66095 5.68150 5.71810 5.75153 5.79380 5.94395 5.99939 6.01682 6.10790 6.14106 6.23632 6.41495 6.49428 6.55339 6.72427 7.34214 7.51945 7.56215 7.73093 8.22745 8.26349 9.10796 9.71378 10.33854 11.27889 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015952 B = 0.003610 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.869434 B = 7755.299803 C = 8632.960289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.596 5.596 3 C 0.526 3.474 4 O -0.547 6.547 5 C -0.080 4.080 6 C -0.171 4.171 7 C -0.127 4.127 8 C -0.158 4.158 9 C 0.287 3.713 10 F -0.199 7.199 11 F -0.204 7.204 12 C -0.158 4.158 13 C -0.091 4.091 14 C 0.095 3.905 15 H 0.121 0.879 16 C -0.156 4.156 17 C 0.152 3.848 18 N -0.600 5.600 19 C -0.225 4.225 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.914 3.086 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.126 3.874 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.110 0.890 45 H 0.016 0.984 46 H 0.253 0.747 47 H 0.031 0.969 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.073 14.652 1.402 16.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.327 5.327 3 C 0.314 3.686 4 O -0.425 6.425 5 C -0.083 4.083 6 C -0.227 4.227 7 C -0.164 4.164 8 C -0.196 4.196 9 C 0.251 3.749 10 F -0.180 7.180 11 F -0.185 7.185 12 C -0.196 4.196 13 C -0.129 4.129 14 C -0.008 4.008 15 H 0.138 0.862 16 C -0.196 4.196 17 C 0.027 3.973 18 N -0.327 5.327 19 C -0.353 4.353 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.570 5.570 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.207 1.207 27 C -0.001 4.001 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.128 0.872 45 H 0.034 0.966 46 H 0.064 0.936 47 H 0.049 0.951 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 6.712 14.987 1.437 16.484 hybrid contribution -0.095 -0.802 -0.740 1.095 sum 6.617 14.185 0.698 15.668 Atomic orbital electron populations 1.21602 0.79346 1.03041 1.01783 1.47821 1.06997 1.05804 1.72080 1.20314 0.89188 0.83242 0.75868 1.90657 1.70258 1.31298 1.50316 1.20781 0.92432 0.97631 0.97449 1.22476 1.01936 1.01887 0.96450 1.21989 0.94159 1.03442 0.96787 1.22574 0.97635 0.93429 1.05964 1.21159 0.74230 0.94137 0.85374 1.92998 1.85065 1.82679 1.57265 1.93002 1.31349 1.97456 1.96721 1.22573 0.98580 1.02503 0.95934 1.21338 0.92308 0.94643 1.04621 1.23046 0.97330 0.82459 0.97967 0.86216 1.23476 1.01349 0.98943 0.95786 1.21956 0.98351 0.91413 0.85543 1.44404 1.78780 1.00895 1.08613 1.19058 1.37678 0.84661 0.93940 0.90440 1.24771 1.01599 0.97506 0.96443 1.69761 1.54196 1.22071 1.10943 0.86078 0.78157 0.82486 0.78796 1.21552 1.21602 1.20665 1.21589 0.98362 0.86409 0.93726 0.92845 0.90286 0.91191 0.89568 0.91526 0.90910 0.87889 0.90210 0.88848 0.88055 0.89298 0.88426 0.90231 0.89701 0.91864 0.91333 0.87212 0.96636 0.93614 0.95093 0.95673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 8.99 59.85 0.54 1.74 16 2 N -0.60 -8.67 2.88 -171.83 -0.49 -9.17 16 3 C 0.53 7.63 6.47 -10.98 -0.07 7.56 16 4 O -0.55 -9.42 15.62 5.56 0.09 -9.33 16 5 C -0.08 -0.91 0.49 -155.66 -0.08 -0.98 16 6 C -0.17 -1.68 7.24 37.16 0.27 -1.42 16 7 C -0.13 -1.42 4.28 -26.73 -0.11 -1.53 16 8 C -0.16 -1.55 5.18 -26.74 -0.14 -1.69 16 9 C 0.29 3.02 2.10 -26.73 -0.06 2.96 16 10 F -0.20 -2.48 16.02 2.25 0.04 -2.44 16 11 F -0.20 -2.36 17.06 2.25 0.04 -2.32 16 12 C -0.16 -1.39 5.19 -26.73 -0.14 -1.53 16 13 C -0.09 -0.96 3.86 -26.73 -0.10 -1.07 16 14 C 0.10 1.45 1.29 -66.09 -0.09 1.36 16 15 H 0.12 1.64 2.69 -51.93 -0.14 1.50 16 16 C -0.16 -2.60 6.36 -24.58 -0.16 -2.76 16 17 C 0.15 3.33 5.89 -2.53 -0.01 3.32 16 18 N -0.60 -14.06 3.39 -170.07 -0.58 -14.63 16 19 C -0.23 -5.91 10.27 -15.06 -0.15 -6.06 16 20 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 21 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 22 N -0.92 -25.35 10.09 55.49 0.56 -24.79 16 23 Si 0.91 21.15 29.55 -169.99 -5.02 16.13 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.13 2.37 6.66 -3.07 -0.02 2.35 16 28 H 0.05 0.74 8.06 -51.93 -0.42 0.32 16 29 H 0.08 1.13 6.38 -51.93 -0.33 0.80 16 30 H 0.07 0.97 7.52 -51.93 -0.39 0.58 16 31 H 0.09 0.96 3.75 -51.93 -0.19 0.77 16 32 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.07 0.59 4.93 -51.93 -0.26 0.33 16 34 H 0.10 1.26 3.76 -51.93 -0.20 1.07 16 35 H 0.08 0.96 7.80 -51.93 -0.41 0.55 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.10 0.85 6.17 -51.92 -0.32 0.53 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.71 6.74 -51.93 -0.35 0.36 16 40 H 0.08 0.95 7.78 -51.93 -0.40 0.55 16 41 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 42 H 0.06 0.92 7.38 -51.93 -0.38 0.54 16 43 H 0.07 1.16 6.38 -51.93 -0.33 0.83 16 44 H 0.11 2.77 5.87 -51.93 -0.31 2.46 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.25 6.80 8.31 -40.82 -0.34 6.47 16 47 H 0.03 0.60 6.89 -51.93 -0.36 0.24 16 48 H 0.03 0.47 7.27 -51.93 -0.38 0.09 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -29.72 351.80 -7.30 -37.03 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.81 Total: 2.28 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.42 Total: 1.95 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.51 Total: -48.59 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.07 Total: -4.76 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.72 -7.30 -37.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033207940.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.471 kcal (2) G-P(sol) polarization free energy of solvation -29.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds