Wall clock time and date at job start Sat Apr 11 2020 02:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38550 * 120.01736 * 2 1 4 4 C 1.40075 * 117.81987 * 179.97438 * 3 2 1 5 5 C 1.48138 * 121.14101 * 180.02562 * 4 3 2 6 6 O 1.21516 * 119.99756 * 126.16362 * 5 4 3 7 7 N 1.34779 * 119.99969 * 306.14814 * 5 4 3 8 8 C 1.46827 * 120.30478 * 354.14759 * 7 5 4 9 9 C 1.52961 * 107.38982 * 235.03282 * 8 7 5 10 10 C 1.51627 * 109.83395 * 298.70526 * 9 8 7 11 11 H 1.09002 * 110.46755 * 288.62962 * 10 9 8 12 12 C 1.51780 * 113.20335 * 52.86897 * 10 9 8 13 13 H 1.08999 * 105.71678 * 206.88221 * 12 10 9 14 14 C 1.53383 * 105.83281 * 95.05973 * 12 10 9 15 15 C 1.54468 * 102.54466 * 29.49335 * 14 12 10 16 16 N 1.46874 * 106.65166 * 332.25905 * 15 14 12 17 17 C 1.36936 * 125.33586 * 195.40311 * 16 15 14 18 18 H 1.07997 * 119.99794 * 174.46625 * 17 16 15 19 19 C 1.38809 * 119.99972 * 354.46550 * 17 16 15 20 20 N 1.31628 * 120.00092 * 4.89559 * 19 17 16 21 21 Si 1.86801 * 119.99976 * 184.89220 * 19 17 16 22 22 H 1.48498 * 109.46894 * 95.00504 * 21 19 17 23 23 H 1.48506 * 109.46866 * 215.00245 * 21 19 17 24 24 H 1.48500 * 109.47080 * 334.99926 * 21 19 17 25 25 C 1.45644 * 120.30095 * 174.16529 * 7 5 4 26 26 C 1.39763 * 117.70809 * 0.27109 * 4 3 2 27 27 C 1.50689 * 120.17165 * 179.70790 * 26 4 3 28 28 N 1.31894 * 119.65219 * 359.44501 * 26 4 3 29 29 N 1.28283 * 122.33094 * 0.58404 * 28 26 4 30 30 H 1.09004 * 109.46993 * 89.99826 * 1 2 3 31 31 H 1.08997 * 109.47008 * 209.99880 * 1 2 3 32 32 H 1.08999 * 109.47100 * 329.99902 * 1 2 3 33 33 H 1.08007 * 121.08661 * 359.95631 * 3 2 1 34 34 H 1.08998 * 109.87046 * 354.51035 * 8 7 5 35 35 H 1.08997 * 109.87248 * 115.48750 * 8 7 5 36 36 H 1.08999 * 109.38435 * 58.68548 * 9 8 7 37 37 H 1.09006 * 109.37985 * 178.46890 * 9 8 7 38 38 H 1.09002 * 110.79502 * 271.22938 * 14 12 10 39 39 H 1.09004 * 110.79035 * 147.75579 * 14 12 10 40 40 H 1.08994 * 110.02767 * 212.95970 * 15 14 12 41 41 H 1.08998 * 110.02232 * 91.55405 * 15 14 12 42 42 H 0.96996 * 119.99682 * 179.97438 * 20 19 17 43 43 H 1.08992 * 108.44606 * 22.16304 * 25 7 5 44 44 H 1.09001 * 108.44263 * 264.85252 * 25 7 5 45 45 H 1.09004 * 109.47205 * 94.87428 * 27 26 4 46 46 H 1.09001 * 109.47105 * 214.87496 * 27 26 4 47 47 H 1.08997 * 109.47601 * 334.87277 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1460 0.0006 5 6 4.4140 2.3836 0.0012 6 8 5.2663 2.5496 0.8512 7 7 4.2095 3.3252 -0.9412 8 6 3.2736 3.0776 -2.0452 9 6 4.0380 3.3004 -3.3512 10 6 4.5275 4.7337 -3.4227 11 1 3.6920 5.4141 -3.5876 12 6 5.3175 5.1576 -2.1979 13 1 5.1906 6.2376 -2.1240 14 6 6.7929 4.9369 -2.5545 15 6 6.8031 5.1463 -4.0849 16 7 5.4637 4.7861 -4.5680 17 6 5.1317 4.5428 -5.8740 18 1 4.1395 4.1969 -6.1235 19 6 6.0704 4.7407 -6.8772 20 7 7.3066 5.0690 -6.5663 21 14 5.5793 4.5412 -8.6684 22 1 5.2186 5.8663 -9.2333 23 1 6.7173 3.9703 -9.4330 24 1 4.4119 3.6282 -8.7629 25 6 4.9152 4.5975 -0.8741 26 6 4.2017 -0.1154 -0.0048 27 6 5.7036 -0.2378 -0.0111 28 7 3.4483 -1.1980 0.0010 29 7 2.1667 -1.1419 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6782 2.1453 -0.0007 34 1 2.9097 2.0512 -1.9992 35 1 2.4349 3.7709 -1.9825 36 1 4.8927 2.6251 -3.3899 37 1 3.3786 3.0981 -4.1953 38 1 7.1050 3.9239 -2.3005 39 1 7.4251 5.6736 -2.0589 40 1 7.5516 4.5013 -4.5449 41 1 7.0155 6.1898 -4.3173 42 1 7.9626 5.2069 -7.2674 43 1 5.8121 4.4628 -0.2697 44 1 4.2727 5.3222 -0.3740 45 1 6.0628 -0.3567 1.0111 46 1 5.9949 -1.1063 -0.6019 47 1 6.1397 0.6609 -0.4472 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036725968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:38:06 Heat of formation + Delta-G solvation = 53.707641 kcal Electronic energy + Delta-G solvation = -29297.853262 eV Core-core repulsion = 25481.903180 eV Total energy + Delta-G solvation = -3815.950082 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.66956 -40.17682 -38.41254 -35.63793 -34.73330 -33.94541 -32.79202 -31.82845 -30.38082 -29.53108 -28.30171 -27.08814 -25.88088 -24.78402 -23.61978 -22.96602 -22.64568 -20.39979 -20.18397 -18.28542 -17.95101 -17.49090 -16.96222 -16.27874 -15.96342 -15.68859 -15.21845 -14.87682 -14.57735 -14.56126 -13.89401 -13.74073 -13.72499 -13.59342 -13.16869 -13.15384 -12.80624 -12.74030 -12.62704 -12.42863 -12.33970 -11.88343 -11.63984 -11.40620 -11.20929 -11.17735 -10.91375 -10.81998 -10.61392 -10.30825 -10.18655 -10.11065 -9.90794 -9.76904 -9.69383 -9.68000 -9.52911 -8.72523 -8.60600 -6.89634 -5.75954 -3.12694 0.22279 0.57942 2.35197 2.76262 3.22659 3.35163 3.40272 3.42707 3.65855 3.96996 4.09607 4.20172 4.41546 4.48518 4.76645 4.85287 4.95235 5.00045 5.14488 5.18421 5.21222 5.24096 5.24829 5.39542 5.45623 5.45865 5.47573 5.49699 5.74995 5.76149 5.79571 5.84209 5.88060 5.94016 6.01904 6.15418 6.19445 6.25658 6.46689 6.55500 6.60778 6.78857 6.97878 7.21576 7.51632 7.56117 7.78921 7.88900 8.23598 8.44212 9.15736 9.75856 10.40758 11.32769 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.003500 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.805903 B = 7997.152750 C = 8701.557467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.059 3.941 3 C -0.084 4.084 4 C -0.113 4.113 5 C 0.563 3.437 6 O -0.525 6.525 7 N -0.587 5.587 8 C 0.099 3.901 9 C -0.137 4.137 10 C 0.172 3.828 11 H 0.040 0.960 12 C -0.107 4.107 13 H 0.068 0.932 14 C -0.136 4.136 15 C 0.170 3.830 16 N -0.600 5.600 17 C -0.228 4.228 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.919 5.919 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.133 3.867 26 C 0.109 3.891 27 C -0.102 4.102 28 N -0.237 5.237 29 N -0.229 5.229 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.155 0.845 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.021 0.979 42 H 0.252 0.748 43 H 0.089 0.911 44 H 0.060 0.940 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.743 -5.066 14.169 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.085 4.085 3 C -0.114 4.114 4 C -0.127 4.127 5 C 0.349 3.651 6 O -0.402 6.402 7 N -0.319 5.319 8 C -0.024 4.024 9 C -0.177 4.177 10 C 0.065 3.935 11 H 0.058 0.942 12 C -0.127 4.127 13 H 0.087 0.913 14 C -0.175 4.175 15 C 0.045 3.955 16 N -0.325 5.325 17 C -0.356 4.356 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.566 5.566 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.011 3.989 26 C -0.036 4.036 27 C -0.160 4.160 28 N -0.079 5.079 29 N -0.072 5.072 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.173 0.827 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.039 0.961 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.214 -6.570 14.381 18.824 hybrid contribution -0.241 1.651 -1.135 2.018 sum -10.455 -4.919 13.247 17.578 Atomic orbital electron populations 1.20689 0.86940 1.04180 1.03954 1.22842 0.99278 0.89887 0.96526 1.22486 0.92911 1.00585 0.95391 1.21086 0.94736 0.95587 1.01327 1.17917 0.82884 0.82150 0.82161 1.90804 1.32890 1.78372 1.38089 1.47705 1.43012 1.16061 1.25144 1.22024 0.92047 1.01221 0.87100 1.22200 1.00325 1.00692 0.94477 1.20178 0.92698 0.93290 0.87331 0.94183 1.20732 0.97775 1.00759 0.93388 0.91314 1.22698 0.93723 1.00585 1.00477 1.21300 0.88525 0.99001 0.86628 1.44736 1.03917 1.81904 1.01940 1.18989 0.97519 1.38076 0.80998 0.90530 1.24808 0.95897 1.01567 0.97991 1.69955 1.02013 1.53648 1.30971 0.86131 0.77327 0.77591 0.84901 1.21632 1.21737 1.20649 1.20458 0.97641 0.83018 0.97770 1.23000 0.99466 0.88525 0.92610 1.20751 0.86630 1.04358 1.04296 1.73019 0.98973 1.26148 1.09785 1.72807 1.01722 1.24890 1.07820 0.89523 0.89756 0.90140 0.82689 0.90705 0.90809 0.91206 0.90862 0.92536 0.91974 0.90522 0.96090 0.93724 0.89307 0.92189 0.89064 0.89571 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 10.19 36.00 0.37 -0.25 16 2 C 0.06 0.60 6.86 -82.46 -0.57 0.04 16 3 C -0.08 -0.84 7.65 -38.78 -0.30 -1.14 16 4 C -0.11 -1.42 4.62 -104.57 -0.48 -1.91 16 5 C 0.56 7.87 6.18 -12.19 -0.08 7.79 16 6 O -0.52 -8.64 15.52 5.35 0.08 -8.55 16 7 N -0.59 -7.80 3.00 -177.34 -0.53 -8.33 16 8 C 0.10 1.21 5.66 -3.88 -0.02 1.19 16 9 C -0.14 -2.24 5.07 -27.45 -0.14 -2.38 16 10 C 0.17 3.17 3.35 -68.41 -0.23 2.94 16 11 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 12 C -0.11 -1.71 2.48 -92.88 -0.23 -1.94 16 13 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 14 C -0.14 -2.46 6.37 -25.76 -0.16 -2.62 16 15 C 0.17 3.97 5.47 -3.07 -0.02 3.95 16 16 N -0.60 -14.25 3.02 -164.81 -0.50 -14.75 16 17 C -0.23 -5.98 9.74 -15.06 -0.15 -6.13 16 18 H 0.08 1.94 7.65 -52.49 -0.40 1.53 16 19 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 20 N -0.92 -26.21 10.28 55.49 0.57 -25.63 16 21 Si 0.91 21.49 29.56 -169.99 -5.02 16.46 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 25 C 0.13 1.82 5.98 -6.34 -0.04 1.78 16 26 C 0.11 1.45 6.91 -82.00 -0.57 0.88 16 27 C -0.10 -1.22 9.54 36.00 0.34 -0.87 16 28 N -0.24 -3.37 11.42 33.81 0.39 -2.99 16 29 N -0.23 -3.03 11.40 33.58 0.38 -2.65 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 33 H 0.16 1.11 7.84 -52.48 -0.41 0.70 16 34 H 0.07 0.85 5.32 -51.93 -0.28 0.57 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.07 1.23 7.89 -51.93 -0.41 0.82 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 2.04 6.63 -51.93 -0.34 1.69 16 41 H 0.02 0.54 8.04 -51.93 -0.42 0.12 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 43 H 0.09 1.28 6.75 -51.93 -0.35 0.93 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.08 1.07 6.68 -51.93 -0.35 0.72 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -31.72 369.74 -8.58 -40.29 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.16 Total: -0.50 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -2.36 Total: 1.08 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.31 Total: -54.35 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.08 Total: -8.55 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.72 -8.58 -40.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036725968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.000 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds