Wall clock time and date at job start Sat Apr 11 2020 02:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38548 * 120.01472 * 2 1 4 4 C 1.40073 * 117.82189 * 180.02562 * 3 2 1 5 5 C 1.48134 * 121.14837 * 179.97438 * 4 3 2 6 6 O 1.21514 * 119.99817 * 124.99753 * 5 4 3 7 7 N 1.34768 * 119.99939 * 304.99277 * 5 4 3 8 8 C 1.46598 * 119.69018 * 4.31849 * 7 5 4 9 9 C 1.53956 * 110.58303 * 227.79620 * 8 7 5 10 10 C 1.51515 * 107.35120 * 308.94716 * 9 8 7 11 11 H 1.08998 * 109.28339 * 306.28676 * 10 9 8 12 12 C 1.55368 * 107.78083 * 64.84908 * 10 9 8 13 13 H 1.08992 * 111.50522 * 51.17516 * 12 10 9 14 14 C 1.53746 * 100.21813 * 169.06691 * 12 10 9 15 15 C 1.55286 * 101.84220 * 320.90665 * 14 12 10 16 16 N 1.45470 * 117.34260 * 181.88470 * 10 9 8 17 17 C 1.36935 * 126.40420 * 30.62280 * 16 10 9 18 18 H 1.08000 * 120.00043 * 354.92705 * 17 16 10 19 19 C 1.38815 * 120.00223 * 174.92013 * 17 16 10 20 20 N 1.31616 * 119.99476 * 5.03385 * 19 17 16 21 21 Si 1.86796 * 120.00023 * 185.03234 * 19 17 16 22 22 H 1.48500 * 109.46883 * 95.00433 * 21 19 17 23 23 H 1.48507 * 109.46854 * 214.99890 * 21 19 17 24 24 H 1.48497 * 109.47312 * 335.00060 * 21 19 17 25 25 C 1.47719 * 119.68584 * 184.04092 * 7 5 4 26 26 C 1.39769 * 117.70154 * 0.02562 * 4 3 2 27 27 C 1.50701 * 120.16970 * 180.02562 * 26 4 3 28 28 N 1.31894 * 119.65693 * 359.97438 * 26 4 3 29 29 N 1.28272 * 122.33358 * 0.02562 * 28 26 4 30 30 H 1.08999 * 109.47025 * 269.97623 * 1 2 3 31 31 H 1.08999 * 109.47140 * 29.97791 * 1 2 3 32 32 H 1.09001 * 109.46993 * 149.97623 * 1 2 3 33 33 H 1.07997 * 121.08960 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.25213 * 348.07993 * 8 7 5 35 35 H 1.08997 * 109.25953 * 107.50928 * 8 7 5 36 36 H 1.09002 * 109.87848 * 68.40859 * 9 8 7 37 37 H 1.09004 * 109.88203 * 189.48317 * 9 8 7 38 38 H 1.09004 * 110.95329 * 79.04203 * 14 12 10 39 39 H 1.08994 * 110.95237 * 202.76629 * 14 12 10 40 40 H 1.08999 * 109.91738 * 141.83132 * 15 14 12 41 41 H 1.09001 * 109.91995 * 262.93304 * 15 14 12 42 42 H 0.97002 * 119.99853 * 179.97438 * 20 19 17 43 43 H 1.09007 * 110.07227 * 247.17485 * 25 7 5 44 44 H 1.09002 * 110.07350 * 8.74960 * 25 7 5 45 45 H 1.09003 * 109.47090 * 265.06326 * 27 26 4 46 46 H 1.09002 * 109.46978 * 25.06046 * 27 26 4 47 47 H 1.09000 * 109.47563 * 145.06288 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5997 1.1461 -0.0006 5 6 4.4139 2.3836 -0.0012 6 8 5.2524 2.5596 0.8605 7 7 4.2247 3.3142 -0.9574 8 6 3.1483 3.1400 -1.9373 9 6 3.6706 3.3859 -3.3645 10 6 4.3922 4.7182 -3.3584 11 1 3.7290 5.4849 -2.9579 12 6 5.6328 4.5816 -2.4332 13 1 6.2314 3.7089 -2.6938 14 6 6.3710 5.8869 -2.7724 15 6 6.1425 5.9933 -4.3046 16 7 4.9409 5.1867 -4.6215 17 6 4.4405 4.9299 -5.8701 18 1 3.6025 4.2590 -5.9885 19 6 5.0103 5.5319 -6.9835 20 7 6.0917 6.2704 -6.8512 21 14 4.2424 5.2937 -8.6696 22 1 3.3307 6.4285 -8.9630 23 1 5.3127 5.2400 -9.6978 24 1 3.4737 4.0234 -8.6885 25 6 5.1001 4.5032 -1.0046 26 6 4.2017 -0.1154 -0.0016 27 6 5.7037 -0.2378 -0.0017 28 7 3.4483 -1.1980 -0.0016 29 7 2.1668 -1.1420 -0.0010 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6782 2.1452 0.0004 34 1 2.7592 2.1243 -1.8669 35 1 2.3473 3.8469 -1.7209 36 1 4.3611 2.5917 -3.6485 37 1 2.8354 3.4199 -4.0642 38 1 5.9242 6.7340 -2.2518 39 1 7.4331 5.8053 -2.5413 40 1 5.9757 7.0336 -4.5838 41 1 7.0084 5.6002 -4.8374 42 1 6.4901 6.6908 -7.6293 43 1 4.5270 5.3993 -0.7665 44 1 5.9255 4.3881 -0.3021 45 1 6.0587 -0.3546 -1.0256 46 1 6.1414 0.6602 0.4344 47 1 5.9974 -1.1075 0.5861 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036725970.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:38:13 Heat of formation + Delta-G solvation = 54.346557 kcal Electronic energy + Delta-G solvation = -29142.056091 eV Core-core repulsion = 25326.133714 eV Total energy + Delta-G solvation = -3815.922377 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.71544 -40.15179 -38.42310 -35.70041 -34.74622 -33.94478 -32.67628 -31.73607 -30.44088 -29.52257 -28.20389 -27.10843 -25.78822 -24.71610 -23.54660 -22.86785 -22.45195 -20.33194 -20.02792 -19.32224 -18.01169 -17.50686 -16.41358 -16.33246 -16.07998 -15.54372 -15.21037 -15.03375 -14.67969 -14.33528 -13.99315 -13.86082 -13.74418 -13.59099 -13.28446 -13.11853 -12.87802 -12.72344 -12.63529 -12.57794 -12.37167 -11.78010 -11.64153 -11.53766 -11.23815 -10.99530 -10.89847 -10.83949 -10.66675 -10.32630 -10.19804 -10.14476 -9.98403 -9.72942 -9.71762 -9.67840 -9.56250 -8.77158 -8.68680 -6.91356 -5.79745 -3.12873 0.19338 0.54835 2.29919 2.70504 3.18701 3.34612 3.39733 3.42093 3.63400 3.90915 4.06016 4.18363 4.42039 4.45834 4.74444 4.80705 4.88982 4.97556 5.08108 5.15590 5.19179 5.20730 5.34180 5.39073 5.42365 5.44623 5.45195 5.47447 5.66068 5.73490 5.75839 5.82691 5.87685 5.98354 6.02309 6.04326 6.09675 6.18500 6.33098 6.48868 6.52141 6.67524 6.94213 7.14956 7.48832 7.52153 7.73501 7.83225 8.16352 8.41559 9.11481 9.75141 10.42770 11.33119 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014755 B = 0.003416 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.172714 B = 8195.216901 C = 9166.584862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.060 3.940 3 C -0.086 4.086 4 C -0.115 4.115 5 C 0.563 3.437 6 O -0.527 6.527 7 N -0.592 5.592 8 C 0.103 3.897 9 C -0.129 4.129 10 C 0.168 3.832 11 H 0.021 0.979 12 C -0.125 4.125 13 H 0.081 0.919 14 C -0.135 4.135 15 C 0.177 3.823 16 N -0.594 5.594 17 C -0.230 4.230 18 H 0.078 0.922 19 C -0.005 4.005 20 N -0.919 5.919 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.127 3.873 26 C 0.109 3.891 27 C -0.117 4.117 28 N -0.238 5.238 29 N -0.229 5.229 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.156 0.844 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.042 0.958 41 H 0.051 0.949 42 H 0.253 0.747 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.529 -7.681 14.623 18.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.085 4.085 3 C -0.115 4.115 4 C -0.130 4.130 5 C 0.349 3.651 6 O -0.404 6.404 7 N -0.324 5.324 8 C -0.020 4.020 9 C -0.169 4.169 10 C 0.059 3.941 11 H 0.039 0.961 12 C -0.146 4.146 13 H 0.099 0.901 14 C -0.174 4.174 15 C 0.053 3.947 16 N -0.319 5.319 17 C -0.358 4.358 18 H 0.096 0.904 19 C -0.202 4.202 20 N -0.566 5.566 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.006 3.994 26 C -0.036 4.036 27 C -0.175 4.175 28 N -0.080 5.080 29 N -0.072 5.072 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.174 0.826 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.105 0.895 46 H 0.116 0.884 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.103 -9.148 14.801 18.794 hybrid contribution -0.418 1.506 -1.105 1.914 sum -7.520 -7.642 13.697 17.395 Atomic orbital electron populations 1.20698 0.86894 1.04441 1.03788 1.22849 0.99309 0.89862 0.96443 1.22515 0.92962 1.00651 0.95379 1.21095 0.94762 0.95738 1.01376 1.17983 0.82854 0.82211 0.82095 1.90775 1.34786 1.77983 1.36888 1.48290 1.33492 1.21783 1.28826 1.22046 0.88888 1.01730 0.89373 1.21892 1.01462 0.99814 0.93688 1.20636 0.92599 0.92707 0.88136 0.96143 1.22744 0.98855 0.99502 0.93484 0.90054 1.22719 0.99116 0.95481 1.00117 1.21523 0.89941 0.95748 0.87491 1.44208 1.28903 1.58638 1.00141 1.18983 1.12078 1.22781 0.81950 0.90405 1.24799 0.97811 0.99636 0.97943 1.69943 1.21085 1.36820 1.28740 0.86149 0.78239 0.77636 0.84034 1.21590 1.21725 1.20654 1.21822 0.93602 0.85739 0.98243 1.22975 0.99461 0.88466 0.92652 1.20940 0.86858 1.05496 1.04175 1.73021 0.98994 1.26160 1.09782 1.72807 1.01722 1.24891 1.07801 0.89724 0.89942 0.89642 0.82614 0.90469 0.90977 0.91360 0.90251 0.92215 0.91938 0.94029 0.93067 0.93687 0.90707 0.88870 0.89472 0.88435 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 10.19 36.01 0.37 -0.25 16 2 C 0.06 0.60 6.86 -82.45 -0.57 0.04 16 3 C -0.09 -0.84 7.38 -38.78 -0.29 -1.13 16 4 C -0.12 -1.41 4.78 -104.57 -0.50 -1.91 16 5 C 0.56 7.63 6.61 -12.20 -0.08 7.54 16 6 O -0.53 -8.38 14.63 5.35 0.08 -8.31 16 7 N -0.59 -7.70 2.99 -173.24 -0.52 -8.22 16 8 C 0.10 1.22 5.41 -3.49 -0.02 1.20 16 9 C -0.13 -2.03 5.46 -26.98 -0.15 -2.17 16 10 C 0.17 3.10 2.55 -67.98 -0.17 2.93 16 11 H 0.02 0.40 7.94 -51.93 -0.41 -0.02 16 12 C -0.13 -2.05 2.87 -89.15 -0.26 -2.31 16 13 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 14 C -0.14 -2.34 6.54 -25.13 -0.16 -2.51 16 15 C 0.18 4.07 5.44 -1.92 -0.01 4.06 16 16 N -0.59 -14.14 3.35 -163.10 -0.55 -14.69 16 17 C -0.23 -6.03 9.89 -15.06 -0.15 -6.18 16 18 H 0.08 1.96 7.18 -52.49 -0.38 1.58 16 19 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 20 N -0.92 -26.18 10.47 55.49 0.58 -25.60 16 21 Si 0.91 21.41 29.56 -169.99 -5.02 16.39 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 C 0.13 1.73 5.97 -3.54 -0.02 1.71 16 26 C 0.11 1.41 6.91 -81.99 -0.57 0.84 16 27 C -0.12 -1.31 9.93 36.01 0.36 -0.96 16 28 N -0.24 -3.30 11.42 33.81 0.39 -2.92 16 29 N -0.23 -2.98 11.40 33.58 0.38 -2.60 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.16 1.11 7.52 -52.49 -0.39 0.71 16 34 H 0.08 0.82 4.89 -51.93 -0.25 0.57 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 37 H 0.08 1.26 7.63 -51.93 -0.40 0.87 16 38 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.04 1.06 7.65 -51.93 -0.40 0.66 16 41 H 0.05 1.32 7.37 -51.93 -0.38 0.94 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 44 H 0.09 1.29 7.02 -51.93 -0.36 0.92 16 45 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.10 1.20 5.71 -51.93 -0.30 0.90 16 47 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -31.76 368.02 -8.48 -40.24 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.05 Total: -0.51 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -2.31 Total: 0.67 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.29 Total: -54.02 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.08 Total: -8.31 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.76 -8.48 -40.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036725970.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.582 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds