Wall clock time and date at job start Sat Apr 11 2020 02:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.32679 * 2 1 4 4 C 1.47090 * 109.32951 * 119.65230 * 2 1 3 5 5 C 1.52568 * 114.32934 * 183.05897 * 4 2 1 6 6 H 1.09001 * 109.48536 * 34.95234 * 5 4 2 7 7 N 1.46498 * 109.48769 * 154.99245 * 5 4 2 8 8 C 1.34783 * 119.99705 * 204.99815 * 7 5 4 9 9 O 1.21278 * 120.00042 * 0.02562 * 8 7 5 10 10 C 1.50703 * 119.99857 * 180.02562 * 8 7 5 11 11 C 1.53781 * 113.61536 * 277.50327 * 10 8 7 12 12 C 1.53783 * 87.07686 * 220.01790 * 11 10 8 13 13 F 1.39904 * 113.61775 * 270.88405 * 12 11 10 14 14 F 1.39907 * 113.68854 * 139.99065 * 12 11 10 15 15 C 1.53778 * 87.08433 * 25.43233 * 12 11 10 16 16 C 1.50875 * 109.35674 * 274.98285 * 5 4 2 17 17 C 1.53949 * 110.09421 * 91.88882 * 16 5 4 18 18 N 1.47602 * 112.14181 * 319.43334 * 17 16 5 19 19 C 1.36943 * 118.64235 * 137.86272 * 18 17 16 20 20 H 1.07994 * 120.00136 * 205.87955 * 19 18 17 21 21 C 1.38814 * 119.99579 * 25.88985 * 19 18 17 22 22 N 1.31617 * 120.00513 * 17.58164 * 21 19 18 23 23 Si 1.86803 * 119.99380 * 197.57741 * 21 19 18 24 24 H 1.48496 * 109.47017 * 94.76405 * 23 21 19 25 25 H 1.48500 * 109.46869 * 214.75971 * 23 21 19 26 26 H 1.48492 * 109.47273 * 334.76107 * 23 21 19 27 27 C 1.44664 * 122.54389 * 317.85905 * 18 17 16 28 28 H 1.08998 * 109.46673 * 60.00032 * 1 2 3 29 29 H 1.09000 * 109.46796 * 179.97438 * 1 2 3 30 30 H 1.08988 * 109.47220 * 300.00082 * 1 2 3 31 31 H 1.08998 * 109.47528 * 59.99763 * 3 2 1 32 32 H 1.08999 * 109.47160 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.47093 * 299.99915 * 3 2 1 34 34 H 1.09006 * 108.51197 * 304.31692 * 4 2 1 35 35 H 1.09006 * 108.51131 * 61.96197 * 4 2 1 36 36 H 0.96995 * 120.00654 * 25.00481 * 7 5 4 37 37 H 1.09000 * 112.84324 * 48.80796 * 10 8 7 38 38 H 1.08999 * 113.61265 * 334.56647 * 11 10 8 39 39 H 1.08997 * 113.61514 * 105.47087 * 11 10 8 40 40 H 1.08997 * 113.61857 * 220.01657 * 15 12 11 41 41 H 1.09006 * 113.69511 * 89.12347 * 15 12 11 42 42 H 1.09000 * 109.36649 * 212.07831 * 16 5 4 43 43 H 1.08997 * 109.36833 * 331.70135 * 16 5 4 44 44 H 1.09005 * 108.94960 * 80.12155 * 17 16 5 45 45 H 1.08999 * 108.95006 * 198.75114 * 17 16 5 46 46 H 0.96995 * 120.00336 * 180.02562 * 22 21 19 47 47 H 1.08991 * 109.61436 * 330.84184 * 27 18 17 48 48 H 1.09004 * 109.32383 * 210.89455 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0364 1.4438 0.0000 4 6 2.0169 -0.6867 1.2062 5 6 3.5349 -0.6883 1.3590 6 1 3.9400 0.2481 0.9755 7 7 3.8834 -0.8279 2.7751 8 6 5.0668 -0.3669 3.2265 9 8 5.8428 0.1639 2.4604 10 6 5.4255 -0.5110 4.6831 11 6 4.8260 0.5874 5.5768 12 6 6.1667 0.5966 6.3300 13 9 6.2177 -0.3095 7.3947 14 9 6.6031 1.8775 6.6854 15 6 6.8070 0.0644 5.0371 16 6 4.1146 -1.8438 0.5811 17 6 4.4800 -1.3914 -0.8443 18 7 3.4625 -0.4903 -1.4200 19 6 3.8807 0.6080 -2.1230 20 1 3.2446 1.4778 -2.1944 21 6 5.1221 0.6030 -2.7441 22 7 5.7452 -0.5359 -2.9607 23 14 5.9083 2.2131 -3.2725 24 1 6.8313 2.6856 -2.2095 25 1 6.6686 2.0031 -4.5307 26 1 4.8502 3.2303 -3.4975 27 6 2.0426 -0.7231 -1.2700 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6718 1.9567 0.8899 32 1 3.1264 1.4465 -0.0005 33 1 1.6718 1.9567 -0.8901 34 1 1.5816 -0.2018 2.0800 35 1 1.6730 -1.7207 1.1784 36 1 3.2627 -1.2522 3.3879 37 1 5.2630 -1.5204 5.0610 38 1 4.6169 1.5163 5.0461 39 1 3.9868 0.2472 6.1834 40 1 7.5669 -0.6981 5.2079 41 1 7.1401 0.8493 4.3580 42 1 5.0100 -2.2064 1.0859 43 1 3.3810 -2.6482 0.5281 44 1 5.4378 -0.8718 -0.8162 45 1 4.5749 -2.2708 -1.4813 46 1 6.6128 -0.5393 -3.3943 47 1 1.8548 -1.7928 -1.1793 48 1 1.5193 -0.3358 -2.1443 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089347315.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:38:18 Heat of formation + Delta-G solvation = -95.662563 kcal Electronic energy + Delta-G solvation = -30474.783340 eV Core-core repulsion = 26201.666893 eV Total energy + Delta-G solvation = -4273.116447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.05129 -47.37569 -40.29901 -38.91149 -36.90937 -34.74846 -34.37225 -31.53559 -30.49781 -27.63197 -26.71816 -26.54132 -26.22654 -25.43915 -23.73587 -22.27593 -21.06908 -19.97897 -19.46479 -18.47219 -17.79350 -16.99613 -16.69592 -16.56474 -16.31070 -15.83708 -15.20737 -14.79565 -14.49860 -14.25235 -14.13726 -13.95339 -13.75120 -13.65722 -13.56680 -13.26868 -12.90898 -12.83949 -12.30055 -12.15777 -11.99831 -11.81055 -11.69112 -11.56018 -11.34230 -11.23712 -11.04569 -10.98604 -10.74583 -10.73101 -10.57968 -10.27687 -10.12763 -9.88088 -9.70317 -9.59565 -9.56196 -9.44224 -8.75040 -8.30358 -6.61384 -5.72023 -3.14074 2.67796 3.11786 3.30178 3.44253 3.51075 3.52509 3.53033 3.96865 4.07669 4.21776 4.56700 4.93634 4.97780 5.08826 5.12542 5.18809 5.21579 5.26867 5.44116 5.48448 5.51697 5.55517 5.69966 5.85578 5.94218 5.99221 6.11696 6.16462 6.22848 6.24861 6.34047 6.38622 6.48290 6.58993 6.63577 6.76008 6.81532 6.85793 6.93654 7.08639 7.32238 7.46411 7.71137 7.76162 7.91445 8.41762 8.53143 9.29798 9.97191 10.41700 11.35641 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012466 B = 0.003813 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.539358 B = 7341.125345 C = 8459.161178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.093 4.093 3 C -0.131 4.131 4 C -0.096 4.096 5 C 0.148 3.852 6 H 0.110 0.890 7 N -0.723 5.723 8 C 0.520 3.480 9 O -0.520 6.520 10 C -0.133 4.133 11 C -0.148 4.148 12 C 0.254 3.746 13 F -0.180 7.180 14 F -0.188 7.188 15 C -0.142 4.142 16 C -0.147 4.147 17 C 0.181 3.819 18 N -0.587 5.587 19 C -0.258 4.258 20 H 0.070 0.930 21 C 0.008 3.992 22 N -0.901 5.901 23 Si 0.894 3.106 24 H -0.287 1.287 25 H -0.293 1.293 26 H -0.279 1.279 27 C 0.168 3.832 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.026 0.974 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.392 0.608 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.128 0.872 42 H 0.054 0.946 43 H 0.045 0.955 44 H 0.077 0.923 45 H 0.025 0.975 46 H 0.252 0.748 47 H 0.031 0.969 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.938 -2.040 17.364 18.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.096 4.096 3 C -0.188 4.188 4 C -0.134 4.134 5 C 0.045 3.955 6 H 0.128 0.872 7 N -0.373 5.373 8 C 0.304 3.696 9 O -0.395 6.395 10 C -0.155 4.155 11 C -0.186 4.186 12 C 0.217 3.783 13 F -0.161 7.161 14 F -0.169 7.169 15 C -0.180 4.180 16 C -0.187 4.187 17 C 0.056 3.944 18 N -0.307 5.307 19 C -0.388 4.388 20 H 0.088 0.912 21 C -0.191 4.191 22 N -0.545 5.545 23 Si 0.724 3.276 24 H -0.214 1.214 25 H -0.219 1.219 26 H -0.204 1.204 27 C 0.040 3.960 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.225 0.775 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.146 0.854 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.043 0.957 46 H 0.062 0.938 47 H 0.049 0.951 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.187 -1.698 16.720 17.588 hybrid contribution 0.191 0.471 0.332 0.607 sum -4.996 -1.226 17.052 17.811 Atomic orbital electron populations 1.21799 0.95664 1.00707 1.00936 1.20458 0.93884 0.97334 0.97967 1.21930 1.03588 0.94282 0.98985 1.20601 0.94181 1.00362 0.98274 1.20678 0.94824 1.02088 0.77932 0.87178 1.46305 1.18690 1.60835 1.11493 1.19927 0.82147 0.78771 0.88760 1.90804 1.49167 1.42393 1.57167 1.22573 0.97754 1.00893 0.94272 1.24011 0.96283 1.01189 0.97135 1.22039 0.98443 0.74105 0.83682 1.93018 1.97136 1.66525 1.59425 1.93026 1.90942 1.39349 1.93580 1.23999 0.97288 1.03153 0.93583 1.22439 0.99607 0.96782 0.99848 1.20942 0.93205 0.93598 0.86673 1.43663 0.98948 1.28304 1.59813 1.19274 1.01622 0.92433 1.25447 0.91204 1.24984 0.99728 0.96237 0.98173 1.70071 1.15872 1.23610 1.44971 0.86398 0.79592 0.83889 0.77677 1.21408 1.21948 1.20443 1.20732 0.86144 0.95661 0.93503 0.92816 0.93418 0.93778 0.95529 0.89882 0.93443 0.93292 0.92870 0.77540 0.85866 0.86407 0.88118 0.88337 0.85410 0.92708 0.93645 0.90453 0.95703 0.93791 0.95061 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 8.38 37.16 0.31 -1.46 16 2 C -0.09 -1.49 0.72 -156.36 -0.11 -1.60 16 3 C -0.13 -2.31 6.76 37.16 0.25 -2.06 16 4 C -0.10 -1.39 3.40 -29.79 -0.10 -1.50 16 5 C 0.15 2.44 1.98 -69.22 -0.14 2.31 16 6 H 0.11 2.30 4.73 -51.93 -0.25 2.06 16 7 N -0.72 -9.35 4.93 -55.07 -0.27 -9.62 16 8 C 0.52 7.31 7.18 -10.98 -0.08 7.23 16 9 O -0.52 -10.05 15.56 5.56 0.09 -9.96 16 10 C -0.13 -1.29 4.13 -90.96 -0.38 -1.67 16 11 C -0.15 -1.25 7.42 -25.92 -0.19 -1.44 16 12 C 0.25 2.54 3.27 -25.92 -0.08 2.46 16 13 F -0.18 -1.88 17.38 2.25 0.04 -1.84 16 14 F -0.19 -2.22 17.41 2.25 0.04 -2.18 16 15 C -0.14 -1.46 7.19 -25.92 -0.19 -1.65 16 16 C -0.15 -2.71 5.38 -27.30 -0.15 -2.86 16 17 C 0.18 4.26 4.68 -2.94 -0.01 4.25 16 18 N -0.59 -13.76 1.85 -172.02 -0.32 -14.08 16 19 C -0.26 -6.77 7.64 -15.06 -0.11 -6.89 16 20 H 0.07 1.81 6.43 -52.49 -0.34 1.47 16 21 C 0.01 0.21 4.82 -17.43 -0.08 0.13 16 22 N -0.90 -26.10 11.10 55.49 0.62 -25.49 16 23 Si 0.89 22.06 29.59 -169.99 -5.03 17.03 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 C 0.17 3.29 4.70 -4.04 -0.02 3.27 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.53 8.14 -51.94 -0.42 0.11 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 1.74 4.44 -51.93 -0.23 1.51 16 33 H 0.05 0.86 7.51 -51.92 -0.39 0.47 16 34 H 0.05 0.63 8.01 -51.93 -0.42 0.21 16 35 H 0.05 0.73 7.34 -51.93 -0.38 0.34 16 36 H 0.39 3.66 8.60 -40.82 -0.35 3.31 16 37 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.12 1.06 8.09 -51.93 -0.42 0.64 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.13 1.53 7.43 -51.93 -0.39 1.14 16 42 H 0.05 1.02 7.85 -51.93 -0.41 0.61 16 43 H 0.04 0.77 7.31 -51.93 -0.38 0.39 16 44 H 0.08 2.12 6.34 -51.93 -0.33 1.79 16 45 H 0.02 0.64 8.04 -51.93 -0.42 0.22 16 46 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 47 H 0.03 0.59 8.05 -51.93 -0.42 0.17 16 48 H 0.05 0.94 7.96 -51.93 -0.41 0.53 16 LS Contribution 370.22 15.07 5.58 5.58 Total: -1.00 -30.73 370.22 -7.96 -38.69 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -7.62 Total: 3.36 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -1.08 Total: -1.49 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.03 Total: -49.19 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.08 Total: -4.03 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.73 -7.96 -38.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089347315.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.968 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds