Wall clock time and date at job start Sat Apr 11 2020 02:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46919 * 2 1 4 4 C 1.50700 * 109.47137 * 120.00329 * 2 1 3 5 5 O 1.21280 * 119.99566 * 128.91466 * 4 2 1 6 6 N 1.34765 * 120.00130 * 308.90942 * 4 2 1 7 7 C 1.45925 * 120.06405 * 355.56170 * 6 4 2 8 8 C 1.53959 * 110.12805 * 228.22241 * 7 6 4 9 9 C 1.51514 * 107.40823 * 307.81961 * 8 7 6 10 10 H 1.09003 * 109.28717 * 306.25263 * 9 8 7 11 11 C 1.55368 * 107.78498 * 64.81595 * 9 8 7 12 12 H 1.08995 * 111.50769 * 51.16643 * 11 9 8 13 13 C 1.53740 * 100.22127 * 169.06089 * 11 9 8 14 14 C 1.55282 * 101.84504 * 320.90306 * 13 11 9 15 15 N 1.45470 * 117.33890 * 181.85002 * 9 8 7 16 16 C 1.36938 * 126.40389 * 30.60473 * 15 9 8 17 17 H 1.07997 * 119.99966 * 4.44477 * 16 15 9 18 18 C 1.38809 * 119.99759 * 184.43622 * 16 15 9 19 19 N 1.31621 * 120.00599 * 7.30723 * 18 16 15 20 20 Si 1.86806 * 119.99757 * 187.30484 * 18 16 15 21 21 H 1.48500 * 109.47062 * 94.97760 * 20 18 16 22 22 H 1.48500 * 109.46912 * 214.97582 * 20 18 16 23 23 H 1.48498 * 109.47265 * 334.97363 * 20 18 16 24 24 C 1.47721 * 119.68828 * 174.19999 * 6 4 2 25 25 C 1.53004 * 109.46622 * 240.00234 * 2 1 3 26 26 C 1.52995 * 109.47200 * 60.00348 * 25 2 1 27 27 F 1.39909 * 109.46596 * 179.97438 * 25 2 1 28 28 F 1.39898 * 109.47219 * 299.99587 * 25 2 1 29 29 H 1.08998 * 109.46634 * 309.92044 * 1 2 3 30 30 H 1.08997 * 109.47468 * 69.92927 * 1 2 3 31 31 H 1.09008 * 109.47065 * 189.92697 * 1 2 3 32 32 H 1.09004 * 109.46825 * 195.06754 * 3 2 1 33 33 H 1.08997 * 109.47661 * 315.06760 * 3 2 1 34 34 H 1.09005 * 109.47090 * 75.07241 * 3 2 1 35 35 H 1.08999 * 110.42961 * 107.47600 * 7 6 4 36 36 H 1.09002 * 108.53799 * 347.78058 * 7 6 4 37 37 H 1.08993 * 109.88142 * 188.32067 * 8 7 6 38 38 H 1.09001 * 109.87644 * 67.31669 * 8 7 6 39 39 H 1.09001 * 110.95582 * 79.04852 * 13 11 9 40 40 H 1.09000 * 110.95429 * 202.76625 * 13 11 9 41 41 H 1.08998 * 109.92396 * 141.82957 * 14 13 11 42 42 H 1.09004 * 109.92356 * 262.93694 * 14 13 11 43 43 H 0.96993 * 120.00332 * 179.97438 * 19 18 16 44 44 H 1.09007 * 110.06945 * 8.75573 * 24 6 4 45 45 H 1.08995 * 110.07720 * 247.17628 * 24 6 4 46 46 H 1.08997 * 109.47626 * 59.99132 * 26 25 2 47 47 H 1.09000 * 109.47332 * 179.97438 * 26 25 2 48 48 H 1.08999 * 109.47008 * 299.99365 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.8565 -1.5941 1.1263 6 7 1.5659 -0.3639 2.4463 7 6 0.6482 0.7624 2.5835 8 6 1.1177 1.6934 3.7162 9 6 1.3271 0.8377 4.9489 10 1 0.4197 0.2683 5.1503 11 6 2.4922 -0.1462 4.6512 12 1 3.3696 0.3768 4.2710 13 6 2.7431 -0.7064 6.0607 14 6 2.5645 0.5588 6.9430 15 7 1.7366 1.5140 6.1700 16 6 1.4173 2.7943 6.5361 17 1 0.7456 3.3790 5.9252 18 6 1.9570 3.3405 7.6925 19 7 2.8838 2.6857 8.3593 20 14 1.3680 5.0050 8.3023 21 1 0.2999 4.8113 9.3156 22 1 2.5047 5.7382 8.9151 23 1 0.8313 5.7888 7.1609 24 6 1.9641 -1.1477 3.6334 25 6 2.0399 -0.7212 -1.2493 26 6 1.5299 0.0001 -2.4985 27 9 3.4390 -0.7207 -1.2496 28 9 1.5736 -2.0402 -1.2493 29 1 -0.3632 0.6595 0.7882 30 1 -0.3634 0.3527 -0.9652 31 1 -0.3634 -1.0124 0.1772 32 1 3.0967 1.4542 -0.2672 33 1 1.4752 2.0276 -0.7258 34 1 1.9115 1.8733 0.9930 35 1 -0.3588 0.4081 2.8036 36 1 0.6365 1.3162 1.6447 37 1 0.3574 2.4488 3.9142 38 1 2.0544 2.1751 3.4358 39 1 2.0046 -1.4666 6.3152 40 1 3.7546 -1.1031 6.1482 41 1 2.0582 0.2957 7.8717 42 1 3.5373 0.9990 7.1625 43 1 3.2612 3.0675 9.1671 44 1 2.7466 -1.8584 3.3672 45 1 1.1012 -1.6749 4.0404 46 1 1.8932 1.0278 -2.4985 47 1 1.8936 -0.5134 -3.3885 48 1 0.4400 0.0001 -2.4985 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036877697.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:39:23 Heat of formation + Delta-G solvation = -89.100940 kcal Electronic energy + Delta-G solvation = -31066.108673 eV Core-core repulsion = 26793.276760 eV Total energy + Delta-G solvation = -4272.831913 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.97246 -46.93282 -40.78025 -38.44771 -36.38985 -35.32094 -32.69729 -31.60545 -30.61206 -29.42701 -28.05790 -27.74833 -25.73440 -24.64660 -23.62667 -22.42506 -21.15631 -20.15422 -19.75212 -19.06480 -17.42971 -17.18371 -16.91888 -16.44633 -15.81134 -15.38275 -15.34378 -15.05001 -14.51488 -14.20717 -14.09084 -14.02502 -13.60342 -13.47118 -13.27645 -13.23157 -13.17932 -12.90624 -12.82348 -12.50371 -12.40274 -12.09211 -12.05353 -11.92167 -11.64415 -11.54528 -11.48789 -11.37704 -10.94096 -10.83894 -10.73959 -10.58167 -10.17460 -10.09196 -9.86504 -9.65660 -9.60212 -9.43183 -8.67728 -8.53435 -6.85991 -5.72283 -3.09032 2.58449 2.89194 3.36956 3.41651 3.44479 3.49104 3.81071 4.07679 4.14781 4.45895 4.51285 4.64195 4.65850 4.88249 5.02487 5.12186 5.15447 5.19539 5.28245 5.31283 5.33808 5.35776 5.43646 5.44862 5.49798 5.54678 5.60527 5.76009 5.83132 5.85061 5.88753 6.01336 6.11832 6.15413 6.20838 6.32168 6.46913 6.60551 6.61672 6.80770 7.04516 7.42489 7.46452 7.62232 7.79751 8.15138 8.23292 9.15490 9.80062 10.48240 11.37178 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.003299 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.397241 B = 8486.419035 C = 9139.011968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.125 4.125 3 C -0.158 4.158 4 C 0.523 3.477 5 O -0.528 6.528 6 N -0.599 5.599 7 C 0.088 3.912 8 C -0.131 4.131 9 C 0.167 3.833 10 H 0.020 0.980 11 C -0.123 4.123 12 H 0.079 0.921 13 C -0.134 4.134 14 C 0.170 3.830 15 N -0.594 5.594 16 C -0.227 4.227 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.918 5.918 20 Si 0.909 3.091 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.126 3.874 25 C 0.313 3.687 26 C -0.198 4.198 27 F -0.189 7.189 28 F -0.195 7.195 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.028 0.972 42 H 0.069 0.931 43 H 0.252 0.748 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.906 -4.355 -19.387 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.129 4.129 3 C -0.215 4.215 4 C 0.309 3.691 5 O -0.404 6.404 6 N -0.331 5.331 7 C -0.035 4.035 8 C -0.170 4.170 9 C 0.059 3.941 10 H 0.037 0.963 11 C -0.144 4.144 12 H 0.097 0.903 13 C -0.173 4.173 14 C 0.045 3.955 15 N -0.318 5.318 16 C -0.355 4.355 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.004 3.996 25 C 0.277 3.723 26 C -0.255 4.255 27 F -0.170 7.170 28 F -0.175 7.175 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.111 0.889 47 H 0.102 0.898 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.388 -4.688 -19.231 20.515 hybrid contribution -0.219 0.783 0.534 0.972 sum -5.607 -3.906 -18.697 19.907 Atomic orbital electron populations 1.22467 0.90609 1.04577 1.04602 1.21847 0.99438 0.98512 0.93120 1.22178 1.02850 0.91662 1.04790 1.20036 0.81562 0.83322 0.84186 1.90746 1.32060 1.31695 1.85927 1.47950 1.47085 1.31474 1.06598 1.22366 0.92697 0.87619 1.00781 1.21935 1.02203 0.97981 0.94907 1.20656 0.94232 0.92097 0.87124 0.96285 1.22619 0.99828 0.97423 0.94499 0.90264 1.22672 1.00398 0.99303 0.94891 1.21630 0.96980 0.85427 0.91424 1.44240 1.59406 1.11482 1.16674 1.18985 1.22242 0.88258 1.06023 0.90402 1.24801 0.98556 0.98560 0.98496 1.69928 1.29163 1.38370 1.19093 0.86144 0.77710 0.83422 0.78741 1.21689 1.21802 1.20650 1.21625 1.00128 0.93829 0.84029 1.20591 0.76149 0.79539 0.96058 1.22900 1.04023 1.02561 0.96065 1.93035 1.30016 1.96467 1.97451 1.93012 1.88289 1.38733 1.97507 0.88806 0.90579 0.91092 0.90702 0.90342 0.89409 0.91401 0.88376 0.90501 0.91331 0.92450 0.92003 0.95423 0.91285 0.93755 0.89198 0.91312 0.88915 0.89836 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 7.53 37.16 0.28 -1.04 16 2 C -0.13 -1.36 0.24 -155.66 -0.04 -1.39 16 3 C -0.16 -1.42 7.26 37.16 0.27 -1.15 16 4 C 0.52 7.82 6.19 -10.99 -0.07 7.75 16 5 O -0.53 -9.97 14.24 5.56 0.08 -9.89 16 6 N -0.60 -8.51 2.95 -173.02 -0.51 -9.02 16 7 C 0.09 1.07 3.86 -3.85 -0.01 1.05 16 8 C -0.13 -2.08 5.48 -26.98 -0.15 -2.23 16 9 C 0.17 3.22 2.56 -67.98 -0.17 3.05 16 10 H 0.02 0.39 7.96 -51.93 -0.41 -0.03 16 11 C -0.12 -2.20 2.83 -89.37 -0.25 -2.45 16 12 H 0.08 1.56 8.12 -51.93 -0.42 1.13 16 13 C -0.13 -2.49 6.56 -25.14 -0.16 -2.65 16 14 C 0.17 4.04 5.56 -1.92 -0.01 4.03 16 15 N -0.59 -14.49 3.35 -163.09 -0.55 -15.04 16 16 C -0.23 -6.03 9.84 -15.06 -0.15 -6.17 16 17 H 0.08 1.97 7.28 -52.49 -0.38 1.59 16 18 C -0.01 -0.21 5.46 -17.43 -0.10 -0.30 16 19 N -0.92 -26.54 10.53 55.49 0.58 -25.96 16 20 Si 0.91 21.55 29.56 -169.99 -5.02 16.52 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.13 1.94 6.00 -3.76 -0.02 1.92 16 25 C 0.31 3.65 1.16 -26.73 -0.03 3.62 16 26 C -0.20 -1.38 8.73 37.16 0.32 -1.06 16 27 F -0.19 -2.76 15.20 2.25 0.03 -2.73 16 28 F -0.19 -2.72 16.03 2.25 0.04 -2.69 16 29 H 0.09 0.66 4.49 -51.93 -0.23 0.43 16 30 H 0.08 0.41 5.96 -51.93 -0.31 0.10 16 31 H 0.07 0.64 8.04 -51.92 -0.42 0.22 16 32 H 0.07 0.75 7.43 -51.93 -0.39 0.36 16 33 H 0.08 0.46 7.21 -51.93 -0.37 0.08 16 34 H 0.09 0.84 5.45 -51.93 -0.28 0.56 16 35 H 0.07 0.74 7.95 -51.93 -0.41 0.33 16 36 H 0.10 0.93 2.53 -51.93 -0.13 0.80 16 37 H 0.08 1.21 7.64 -51.93 -0.40 0.82 16 38 H 0.07 1.17 8.12 -51.93 -0.42 0.74 16 39 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.03 0.71 8.09 -51.93 -0.42 0.29 16 42 H 0.07 1.85 6.78 -51.93 -0.35 1.50 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.09 1.47 6.98 -51.93 -0.36 1.11 16 45 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 46 H 0.09 0.50 6.79 -51.93 -0.35 0.15 16 47 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.09 0.47 6.22 -51.93 -0.32 0.15 16 LS Contribution 356.31 15.07 5.37 5.37 Total: -1.00 -33.09 356.31 -7.49 -40.58 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -7.22 Total: -0.14 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.29 Total: 2.98 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.47 Total: -50.01 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.08 Total: -9.89 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.07 Total: -5.41 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.09 -7.49 -40.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036877697.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.525 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds