Wall clock time and date at job start Sat Apr 11 2020 02:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47585 * 2 1 4 4 H 1.09003 * 109.99717 * 54.13197 * 3 2 1 5 5 C 1.54336 * 109.99466 * 293.09824 * 3 2 1 6 6 H 1.09004 * 110.50587 * 336.97357 * 5 3 2 7 7 N 1.46500 * 110.85104 * 100.19308 * 5 3 2 8 8 C 1.34773 * 119.99707 * 200.14763 * 7 5 3 9 9 O 1.21284 * 120.00369 * 0.02562 * 8 7 5 10 10 C 1.50701 * 119.99844 * 179.97438 * 8 7 5 11 11 H 1.09000 * 109.47262 * 300.00457 * 10 8 7 12 12 C 1.52999 * 109.46915 * 60.00442 * 10 8 7 13 13 C 1.52997 * 109.47391 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.47091 * 299.99924 * 13 12 10 15 15 C 1.52999 * 109.46941 * 59.99800 * 14 13 12 16 16 C 1.52997 * 109.47391 * 300.00016 * 15 14 13 17 17 F 1.39904 * 109.46928 * 300.00143 * 16 15 14 18 18 F 1.39897 * 109.47364 * 180.02562 * 16 15 14 19 19 C 1.55154 * 103.02077 * 218.66312 * 5 3 2 20 20 C 1.54913 * 101.58019 * 35.30297 * 19 5 3 21 21 N 1.47021 * 109.88619 * 175.22562 * 3 2 1 22 22 C 1.36935 * 125.65021 * 298.40319 * 21 3 2 23 23 H 1.08005 * 119.99737 * 347.54929 * 22 21 3 24 24 C 1.38808 * 120.00288 * 167.83478 * 22 21 3 25 25 N 1.31622 * 119.99780 * 359.71551 * 24 22 21 26 26 Si 1.86802 * 119.99985 * 179.72394 * 24 22 21 27 27 H 1.48492 * 109.47482 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47070 * 119.99848 * 26 24 22 29 29 H 1.48506 * 109.46777 * 239.99692 * 26 24 22 30 30 H 1.09002 * 109.46840 * 65.43548 * 1 2 3 31 31 H 1.08998 * 109.47404 * 185.43628 * 1 2 3 32 32 H 1.09000 * 109.47144 * 305.44227 * 1 2 3 33 33 H 1.09000 * 109.47307 * 239.99706 * 2 1 3 34 34 H 1.09004 * 109.46979 * 120.00483 * 2 1 3 35 35 H 0.97003 * 120.00168 * 20.14763 * 7 5 3 36 36 H 1.09005 * 109.46971 * 300.00181 * 12 10 8 37 37 H 1.09003 * 109.47194 * 59.99416 * 12 10 8 38 38 H 1.09007 * 109.47283 * 180.02562 * 13 12 10 39 39 H 1.09000 * 109.46828 * 59.99989 * 13 12 10 40 40 H 1.08994 * 109.46688 * 299.99929 * 14 13 12 41 41 H 1.08995 * 109.46678 * 179.97438 * 14 13 12 42 42 H 1.08998 * 109.46994 * 179.97438 * 15 14 13 43 43 H 1.09000 * 109.47143 * 59.99834 * 15 14 13 44 44 H 1.08994 * 111.00479 * 277.23261 * 19 5 3 45 45 H 1.08998 * 111.03498 * 153.39072 * 19 5 3 46 46 H 1.08999 * 110.36338 * 204.14712 * 20 19 5 47 47 H 1.09001 * 110.36498 * 81.83393 * 20 19 5 48 48 H 0.97002 * 119.99869 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5985 1.9939 0.8301 5 6 1.6796 2.1296 -1.3341 6 1 1.5235 1.3867 -2.1163 7 7 0.4958 2.9789 -1.1800 8 6 -0.2209 3.3386 -2.2631 9 8 0.1137 2.9589 -3.3653 10 6 -1.4390 4.2117 -2.1046 11 1 -2.1642 3.7108 -1.4633 12 6 -1.0326 5.5439 -1.4712 13 6 -2.2690 6.4306 -1.3108 14 6 -2.8935 6.6881 -2.6837 15 6 -3.2999 5.3560 -3.3170 16 6 -2.0635 4.4693 -3.4774 17 9 -1.1322 5.1120 -4.3002 18 9 -2.4350 3.2514 -4.0571 19 6 2.9360 2.9886 -1.6355 20 6 4.0696 2.0823 -1.0937 21 7 3.5057 1.4545 0.1151 22 6 4.2278 0.9592 1.1679 23 1 3.7288 0.6976 2.0894 24 6 5.6017 0.7989 1.0530 25 7 6.2098 1.1177 -0.0700 26 14 6.5877 0.1304 2.4919 27 1 5.6755 -0.1487 3.6299 28 1 7.2697 -1.1242 2.0844 29 1 7.6019 1.1333 2.9054 30 1 -0.3633 0.4272 -0.9347 31 1 -0.3634 -1.0230 0.0974 32 1 -0.3633 0.5959 0.8372 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 0.2280 3.2823 -0.2984 36 1 -0.5872 5.3604 -0.4934 37 1 -0.3073 6.0448 -2.1125 38 1 -1.9794 7.3799 -0.8600 39 1 -2.9945 5.9299 -0.6698 40 1 -2.1679 7.1889 -3.3246 41 1 -3.7746 7.3195 -2.5693 42 1 -3.7452 5.5395 -4.2948 43 1 -4.0254 4.8553 -2.6760 44 1 2.9009 3.9350 -1.0959 45 1 3.0478 3.1559 -2.7067 46 1 4.9440 2.6807 -0.8378 47 1 4.3315 1.3218 -1.8293 48 1 7.1699 1.0053 -0.1505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087672021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:38:10 Heat of formation + Delta-G solvation = -134.188723 kcal Electronic energy + Delta-G solvation = -30466.054601 eV Core-core repulsion = 26191.267534 eV Total energy + Delta-G solvation = -4274.787066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.93020 -46.88816 -39.98063 -38.10645 -37.24099 -34.06053 -32.82413 -32.07712 -31.30595 -30.28263 -28.91655 -26.59723 -24.72475 -23.88218 -23.02475 -22.13468 -20.75866 -20.33981 -20.08865 -19.51723 -17.61788 -17.18739 -16.95012 -16.68000 -16.12613 -15.62024 -15.07485 -14.77087 -14.65004 -14.26012 -14.04819 -13.93247 -13.74306 -13.65417 -13.38574 -13.20078 -13.10550 -12.82212 -12.69993 -12.37082 -12.06576 -11.96048 -11.90845 -11.78242 -11.66087 -11.22980 -11.13978 -11.11536 -10.90341 -10.85165 -10.63449 -10.57022 -10.43946 -10.26834 -10.06082 -9.76985 -9.65724 -9.52743 -8.67414 -8.57864 -6.83901 -5.75181 -3.11957 2.70104 3.11784 3.37577 3.43335 3.45740 3.58681 3.76677 4.05715 4.18817 4.46664 4.54110 4.62158 4.71271 4.80531 4.81545 4.97839 5.22116 5.23629 5.29925 5.34585 5.47494 5.50983 5.52576 5.54057 5.56655 5.67904 5.70488 5.73213 5.79916 5.85094 5.91662 6.04291 6.22411 6.29533 6.39711 6.45384 6.56642 6.69214 6.72301 6.93193 7.12719 7.52491 7.58816 7.67099 7.79223 8.25260 8.35770 9.17053 9.78145 10.45119 11.35738 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.022596 B = 0.002994 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.885374 B = 9348.408663 C = 9512.336580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.035 0.965 5 C 0.138 3.862 6 H 0.091 0.909 7 N -0.710 5.710 8 C 0.515 3.485 9 O -0.523 6.523 10 C -0.152 4.152 11 H 0.121 0.879 12 C -0.113 4.113 13 C -0.122 4.122 14 C -0.122 4.122 15 C -0.159 4.159 16 C 0.314 3.686 17 F -0.189 7.189 18 F -0.193 7.193 19 C -0.155 4.155 20 C 0.172 3.828 21 N -0.594 5.594 22 C -0.227 4.227 23 H 0.076 0.924 24 C -0.005 4.005 25 N -0.917 5.917 26 Si 0.910 3.090 27 H -0.280 1.280 28 H -0.290 1.290 29 H -0.291 1.291 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.397 0.603 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.025 0.975 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.592 10.781 -2.128 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.054 3.946 4 H 0.052 0.948 5 C 0.034 3.966 6 H 0.109 0.891 7 N -0.360 5.360 8 C 0.299 3.701 9 O -0.398 6.398 10 C -0.174 4.174 11 H 0.139 0.861 12 C -0.151 4.151 13 C -0.159 4.159 14 C -0.159 4.159 15 C -0.197 4.197 16 C 0.277 3.723 17 F -0.169 7.169 18 F -0.174 7.174 19 C -0.195 4.195 20 C 0.047 3.953 21 N -0.319 5.319 22 C -0.355 4.355 23 H 0.094 0.906 24 C -0.202 4.202 25 N -0.563 5.563 26 Si 0.741 3.259 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.218 1.218 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.231 0.769 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.098 0.902 47 H 0.043 0.957 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -20.069 10.430 -2.915 22.805 hybrid contribution 0.496 -0.480 1.000 1.215 sum -19.573 9.950 -1.916 22.040 Atomic orbital electron populations 1.21769 0.97283 1.00558 1.00842 1.22026 0.93594 0.99190 1.02436 1.21056 0.87266 0.93343 0.92951 0.94790 1.22116 0.83375 0.92306 0.98786 0.89053 1.45985 1.28912 1.52085 1.09050 1.20010 0.83969 0.80934 0.85137 1.90782 1.69559 1.54495 1.24993 1.22480 0.98473 0.99197 0.97292 0.86090 1.21567 0.99023 0.92616 1.01867 1.21617 0.96894 1.00358 0.97080 1.21552 1.01770 0.95752 0.96826 1.22565 0.95935 0.96963 1.04229 1.20554 0.87345 0.78794 0.85622 1.93019 1.67890 1.81479 1.74558 1.93034 1.91767 1.46394 1.86201 1.23410 0.96593 0.99042 1.00436 1.21490 0.93281 0.93186 0.87347 1.44479 0.98442 1.69301 1.19670 1.18993 0.89395 1.36026 0.91089 0.90594 1.24878 0.96906 1.01164 0.97218 1.69941 1.08861 1.52961 1.24562 0.86072 0.80084 0.78383 0.81364 1.20475 1.21709 1.21763 0.93348 0.93639 0.93468 0.92390 0.91629 0.76909 0.89765 0.90095 0.90503 0.91146 0.90665 0.90369 0.89201 0.88754 0.92090 0.91874 0.90233 0.95678 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.66 37.16 0.36 -1.77 16 2 C -0.13 -2.44 5.43 -26.73 -0.15 -2.59 16 3 C 0.16 3.16 2.92 -66.95 -0.20 2.97 16 4 H 0.03 0.64 7.69 -51.93 -0.40 0.24 16 5 C 0.14 2.49 2.00 -66.09 -0.13 2.36 16 6 H 0.09 1.82 7.33 -51.93 -0.38 1.44 16 7 N -0.71 -10.00 4.92 -52.02 -0.26 -10.25 16 8 C 0.52 7.62 6.92 -10.99 -0.08 7.55 16 9 O -0.52 -10.16 14.56 5.55 0.08 -10.08 16 10 C -0.15 -1.58 2.18 -91.77 -0.20 -1.78 16 11 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 12 C -0.11 -0.92 4.98 -26.73 -0.13 -1.05 16 13 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 14 C -0.12 -0.73 5.80 -26.73 -0.16 -0.89 16 15 C -0.16 -1.18 5.45 -26.73 -0.15 -1.32 16 16 C 0.31 3.67 1.37 -26.73 -0.04 3.64 16 17 F -0.19 -2.74 15.10 2.25 0.03 -2.71 16 18 F -0.19 -2.81 16.14 2.25 0.04 -2.78 16 19 C -0.16 -3.07 6.77 -24.58 -0.17 -3.23 16 20 C 0.17 4.17 5.46 -2.53 -0.01 4.15 16 21 N -0.59 -14.55 3.13 -162.57 -0.51 -15.06 16 22 C -0.23 -6.08 9.73 -15.06 -0.15 -6.23 16 23 H 0.08 1.98 7.83 -52.48 -0.41 1.56 16 24 C 0.00 -0.13 5.47 -17.43 -0.10 -0.23 16 25 N -0.92 -26.51 10.48 55.49 0.58 -25.93 16 26 Si 0.91 21.70 29.55 -169.99 -5.02 16.67 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 H 0.05 0.71 7.49 -51.93 -0.39 0.32 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 1.15 8.03 -51.93 -0.42 0.73 16 34 H 0.06 1.29 7.85 -51.93 -0.41 0.89 16 35 H 0.40 4.49 7.74 -40.82 -0.32 4.17 16 36 H 0.08 0.59 7.56 -51.93 -0.39 0.20 16 37 H 0.08 0.79 7.80 -51.93 -0.41 0.39 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.53 7.80 -51.93 -0.41 0.13 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.08 2.14 6.74 -51.93 -0.35 1.79 16 47 H 0.03 0.67 8.11 -51.93 -0.42 0.24 16 48 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 376.95 15.07 5.68 5.68 Total: -1.00 -32.68 376.95 -8.87 -41.55 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -8.06 Total: 2.18 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.44 Total: 0.72 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.18 Total: -51.25 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.07 Total: -5.48 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.68 -8.87 -41.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087672021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.636 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds