Wall clock time and date at job start Sat Apr 11 2020 02:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.46927 * 2 1 4 4 C 1.38546 * 120.01314 * 125.00107 * 3 2 1 5 5 C 1.40077 * 117.81976 * 179.97438 * 4 3 2 6 6 C 1.48136 * 121.15159 * 179.97438 * 5 4 3 7 7 O 1.21505 * 120.00279 * 175.72710 * 6 5 4 8 8 N 1.34778 * 119.99679 * 355.73859 * 6 5 4 9 9 C 1.46499 * 120.00148 * 179.97438 * 8 6 5 10 10 H 1.09008 * 110.55311 * 32.09291 * 9 8 6 11 11 C 1.54224 * 110.49567 * 269.09429 * 9 8 6 12 12 C 1.55848 * 103.56191 * 241.50584 * 11 9 8 13 13 H 1.08997 * 116.13283 * 159.06206 * 12 11 9 14 14 C 1.55851 * 105.06075 * 288.08759 * 12 11 9 15 15 C 1.54853 * 103.44499 * 71.82408 * 14 12 11 16 16 C 1.55841 * 110.62814 * 154.99358 * 9 8 6 17 17 H 1.08992 * 116.13050 * 319.33938 * 16 9 8 18 18 N 1.50235 * 101.04925 * 85.55564 * 16 9 8 19 19 C 1.36939 * 130.83437 * 234.00333 * 18 16 9 20 20 H 1.07995 * 120.00452 * 342.88689 * 19 18 16 21 21 C 1.38813 * 119.99811 * 162.88969 * 19 18 16 22 22 N 1.31623 * 120.00358 * 333.13595 * 21 19 18 23 23 Si 1.86803 * 120.00043 * 153.13409 * 21 19 18 24 24 H 1.48502 * 109.46889 * 179.97438 * 23 21 19 25 25 H 1.48499 * 109.47087 * 60.00257 * 23 21 19 26 26 H 1.48496 * 109.46913 * 300.00090 * 23 21 19 27 27 C 1.39771 * 117.70179 * 0.24804 * 5 4 3 28 28 C 1.50703 * 120.17131 * 179.72568 * 27 5 4 29 29 N 1.31895 * 119.65587 * 359.48963 * 27 5 4 30 30 N 1.28266 * 122.33025 * 0.53682 * 29 27 5 31 31 H 1.09004 * 109.47039 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46989 * 299.99670 * 1 2 3 33 33 H 1.08997 * 109.47301 * 60.00322 * 1 2 3 34 34 H 1.09003 * 109.47153 * 239.99609 * 2 1 3 35 35 H 1.09003 * 109.46961 * 119.99986 * 2 1 3 36 36 H 1.08001 * 121.09436 * 0.02562 * 4 3 2 37 37 H 0.97002 * 120.00186 * 359.97438 * 8 6 5 38 38 H 1.08998 * 110.64619 * 122.94108 * 11 9 8 39 39 H 1.09000 * 110.49586 * 359.97438 * 11 9 8 40 40 H 1.09003 * 110.62495 * 190.31370 * 14 12 11 41 41 H 1.09000 * 110.62760 * 313.17540 * 14 12 11 42 42 H 1.09001 * 110.62524 * 118.49455 * 15 14 12 43 43 H 1.09002 * 110.62449 * 241.50433 * 15 14 12 44 44 H 0.97001 * 119.99532 * 0.36601 * 22 21 19 45 45 H 1.09000 * 109.46947 * 83.64159 * 28 27 5 46 46 H 1.08991 * 109.47816 * 203.64575 * 28 27 5 47 47 H 1.09006 * 109.47314 * 323.64840 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9120 1.8448 0.9827 5 6 3.3500 3.1746 0.9385 6 6 4.2902 3.7059 1.9525 7 8 4.7172 4.8389 1.8505 8 7 4.6722 2.9324 2.9880 9 6 5.6025 3.4575 3.9905 10 1 5.4612 4.5307 4.1187 11 6 7.0589 3.1409 3.5940 12 6 7.5702 2.2473 4.7639 13 1 8.4347 1.6201 4.5465 14 6 7.7298 3.2165 5.9739 15 6 6.2685 3.5345 6.3758 16 6 5.4234 2.7140 5.3484 17 1 4.3973 2.4979 5.6456 18 7 6.3112 1.5198 5.1420 19 6 6.0513 0.1802 5.2572 20 1 5.1772 -0.1560 5.7950 21 6 6.9114 -0.7456 4.6827 22 7 7.6317 -0.4118 3.6328 23 14 7.0467 -2.4652 5.3996 24 1 8.0253 -3.2551 4.6098 25 1 5.7192 -3.1288 5.3481 26 1 7.5027 -2.3790 6.8102 27 6 2.8647 3.9846 -0.0921 28 6 3.2945 5.4258 -0.1890 29 7 2.0323 3.4798 -0.9819 30 7 1.6350 2.2611 -0.9357 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.2498 1.1719 1.7570 37 1 4.3312 2.0279 3.0695 38 1 7.6461 4.0566 3.5253 39 1 7.0875 2.5932 2.6520 40 1 8.2550 2.7249 6.7929 41 1 8.2539 4.1235 5.6728 42 1 6.0690 3.2008 7.3941 43 1 6.0655 4.6005 6.2734 44 1 7.5654 0.4829 3.2638 45 1 4.2517 5.4854 -0.7071 46 1 2.5457 5.9919 -0.7428 47 1 3.3973 5.8425 0.8130 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097581382.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:38:50 Heat of formation + Delta-G solvation = 56.475491 kcal Electronic energy + Delta-G solvation = -29085.085077 eV Core-core repulsion = 25269.255017 eV Total energy + Delta-G solvation = -3815.830059 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.44285 -39.96922 -38.62435 -35.40691 -34.21299 -33.56078 -32.86266 -31.59682 -29.26500 -29.09885 -28.29072 -27.60378 -25.81523 -24.08562 -23.56257 -22.81322 -21.51051 -20.21657 -20.03367 -18.98915 -17.73553 -17.64336 -17.47315 -15.95984 -15.76823 -15.59162 -15.16803 -14.86458 -14.49247 -14.27011 -14.02443 -13.85856 -13.78583 -13.46521 -13.27981 -12.99307 -12.62048 -12.43499 -12.16939 -11.97180 -11.90781 -11.69539 -11.52480 -11.37921 -10.91739 -10.88922 -10.81163 -10.72749 -10.53658 -10.30944 -10.28836 -10.17858 -9.95976 -9.73640 -9.59023 -9.56308 -9.32613 -8.83648 -8.56173 -7.14667 -6.31809 -3.28173 0.26455 0.74797 2.79148 3.16841 3.37615 3.43780 3.52328 3.60483 3.79801 4.14187 4.29952 4.37641 4.54397 4.69789 4.82979 4.90040 4.99031 5.08671 5.17347 5.34471 5.38055 5.39987 5.41088 5.54136 5.61723 5.67039 5.71418 5.71994 5.80968 5.83400 5.86445 5.87702 5.96149 5.99920 6.09857 6.14116 6.18074 6.27955 6.34930 6.43074 6.52252 6.67187 6.74004 6.93192 7.07089 7.41334 7.66345 8.24088 8.25789 8.58129 8.78462 9.61890 10.31663 11.09482 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010667 B = 0.004337 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.247791 B = 6453.789220 C = 8408.421935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C 0.061 3.939 4 C -0.077 4.077 5 C -0.127 4.127 6 C 0.557 3.443 7 O -0.530 6.530 8 N -0.693 5.693 9 C 0.128 3.872 10 H 0.086 0.914 11 C -0.140 4.140 12 C 0.141 3.859 13 H 0.105 0.895 14 C -0.134 4.134 15 C -0.125 4.125 16 C 0.126 3.874 17 H 0.091 0.909 18 N -0.593 5.593 19 C -0.331 4.331 20 H 0.066 0.934 21 C -0.023 4.023 22 N -0.916 5.916 23 Si 1.069 2.931 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.294 1.294 27 C 0.115 3.885 28 C -0.103 4.103 29 N -0.246 5.246 30 N -0.224 5.224 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.157 0.843 37 H 0.404 0.596 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.271 0.729 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.837 5.648 -2.606 10.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.083 4.083 4 C -0.106 4.106 5 C -0.141 4.141 6 C 0.342 3.658 7 O -0.409 6.409 8 N -0.342 5.342 9 C 0.022 3.978 10 H 0.104 0.896 11 C -0.180 4.180 12 C 0.034 3.966 13 H 0.123 0.877 14 C -0.174 4.174 15 C -0.165 4.165 16 C 0.017 3.983 17 H 0.109 0.891 18 N -0.316 5.316 19 C -0.459 4.459 20 H 0.084 0.916 21 C -0.226 4.226 22 N -0.556 5.556 23 Si 0.898 3.102 24 H -0.211 1.211 25 H -0.220 1.220 26 H -0.221 1.221 27 C -0.030 4.030 28 C -0.161 4.161 29 N -0.088 5.088 30 N -0.067 5.067 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.174 0.826 37 H 0.240 0.760 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.104 0.896 46 H 0.091 0.909 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.728 4.977 -4.156 10.873 hybrid contribution 0.019 0.663 1.504 1.644 sum -8.710 5.640 -2.652 10.710 Atomic orbital electron populations 1.21702 0.93695 1.02194 1.02696 1.20488 0.97261 0.88886 1.04245 1.22834 0.94677 0.98700 0.92128 1.22684 0.94135 0.95245 0.98574 1.21208 0.99802 0.94897 0.98204 1.17861 0.80961 0.85588 0.81352 1.90700 1.56248 1.18182 1.75744 1.45958 1.46370 1.17292 1.24615 1.22575 0.88662 0.97703 0.88841 0.89629 1.23315 0.94998 0.99370 1.00340 1.22994 0.91613 0.90621 0.91357 0.87681 1.22959 0.95889 0.98740 0.99780 1.22939 0.96233 0.98119 0.99192 1.23295 0.94960 0.88284 0.91717 0.89094 1.46588 1.04437 1.00193 1.80360 1.19658 1.13112 0.79668 1.33416 0.91643 1.25754 0.97945 1.03806 0.95061 1.70824 1.45243 1.22181 1.17379 0.83437 0.76085 0.75036 0.75597 1.21087 1.22031 1.22101 1.23108 0.91647 0.98745 0.89458 1.20955 1.01651 0.87930 1.05587 1.73036 1.09456 1.05504 1.20826 1.72710 1.17275 0.97546 1.19121 0.91799 0.92806 0.91503 0.89235 0.89437 0.82594 0.76000 0.92049 0.91742 0.92416 0.92699 0.92032 0.92612 0.91756 0.89588 0.90867 0.87642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.78 37.16 0.36 -0.96 16 2 C -0.07 -0.71 6.35 -27.88 -0.18 -0.88 16 3 C 0.06 0.80 6.25 -82.46 -0.52 0.28 16 4 C -0.08 -1.03 9.30 -38.78 -0.36 -1.39 16 5 C -0.13 -1.88 5.92 -104.57 -0.62 -2.50 16 6 C 0.56 9.02 7.75 -12.20 -0.09 8.93 16 7 O -0.53 -9.38 13.14 5.36 0.07 -9.31 16 8 N -0.69 -11.31 5.01 -52.57 -0.26 -11.58 16 9 C 0.13 2.20 2.79 -65.77 -0.18 2.02 16 10 H 0.09 1.44 7.24 -51.92 -0.38 1.06 16 11 C -0.14 -2.62 6.07 -24.57 -0.15 -2.77 16 12 C 0.14 2.92 3.81 -62.80 -0.24 2.68 16 13 H 0.11 2.48 6.73 -51.93 -0.35 2.13 16 14 C -0.13 -2.34 6.44 -24.23 -0.16 -2.49 16 15 C -0.12 -2.03 6.46 -23.98 -0.15 -2.18 16 16 C 0.13 2.26 5.08 -62.55 -0.32 1.94 16 17 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 18 N -0.59 -13.08 2.83 -145.55 -0.41 -13.49 16 19 C -0.33 -8.31 10.38 -15.06 -0.16 -8.47 16 20 H 0.07 1.64 7.96 -52.49 -0.42 1.23 16 21 C -0.02 -0.61 5.28 -17.43 -0.09 -0.70 16 22 N -0.92 -25.43 12.84 55.49 0.71 -24.71 16 23 Si 1.07 23.66 30.00 -169.99 -5.10 18.56 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.11 1.70 6.91 -81.99 -0.57 1.14 16 28 C -0.10 -1.33 9.00 36.01 0.32 -1.00 16 29 N -0.25 -3.83 11.42 33.81 0.39 -3.44 16 30 N -0.22 -3.34 11.04 33.57 0.37 -2.97 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.66 7.96 -51.93 -0.41 0.25 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.09 0.78 7.92 -51.93 -0.41 0.37 16 36 H 0.16 1.88 6.58 -52.49 -0.35 1.53 16 37 H 0.40 6.55 6.87 -40.82 -0.28 6.27 16 38 H 0.06 1.05 7.82 -51.93 -0.41 0.65 16 39 H 0.06 1.34 7.53 -51.93 -0.39 0.95 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.84 7.82 -51.93 -0.41 0.44 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.79 7.83 -51.93 -0.41 0.38 16 44 H 0.27 7.43 5.73 -40.82 -0.23 7.20 16 45 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.11 1.43 5.89 -51.93 -0.31 1.13 16 LS Contribution 374.16 15.07 5.64 5.64 Total: -1.00 -29.41 374.16 -8.61 -38.02 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -6.92 Total: 9.64 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -3.09 Total: -6.36 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.79 Total: -56.20 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.07 Total: -9.31 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -5.10 Total: 18.56 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.41 -8.61 -38.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097581382.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.498 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds