Wall clock time and date at job start Sat Apr 11 2020 02:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.46927 * 2 1 4 4 C 1.38546 * 120.01314 * 125.00107 * 3 2 1 5 5 C 1.40077 * 117.81976 * 179.97438 * 4 3 2 6 6 C 1.48136 * 121.15159 * 179.97438 * 5 4 3 7 7 O 1.21505 * 120.00279 * 175.72710 * 6 5 4 8 8 N 1.34778 * 119.99679 * 355.73859 * 6 5 4 9 9 C 1.46499 * 120.00148 * 179.97438 * 8 6 5 10 10 H 1.09008 * 110.55311 * 32.09291 * 9 8 6 11 11 C 1.54224 * 110.49567 * 269.09429 * 9 8 6 12 12 C 1.55848 * 103.56191 * 241.50584 * 11 9 8 13 13 H 1.08997 * 116.13283 * 159.06206 * 12 11 9 14 14 C 1.55851 * 105.06075 * 288.08759 * 12 11 9 15 15 C 1.54853 * 103.44499 * 71.82408 * 14 12 11 16 16 C 1.55841 * 110.62814 * 154.99358 * 9 8 6 17 17 H 1.08992 * 116.13050 * 319.33938 * 16 9 8 18 18 N 1.50235 * 101.04925 * 85.55564 * 16 9 8 19 19 C 1.36939 * 130.83437 * 234.00333 * 18 16 9 20 20 H 1.07995 * 120.00452 * 342.88689 * 19 18 16 21 21 C 1.38813 * 119.99811 * 162.88969 * 19 18 16 22 22 N 1.31623 * 120.00358 * 333.13595 * 21 19 18 23 23 Si 1.86803 * 120.00043 * 153.13409 * 21 19 18 24 24 H 1.48502 * 109.46889 * 179.97438 * 23 21 19 25 25 H 1.48499 * 109.47087 * 60.00257 * 23 21 19 26 26 H 1.48496 * 109.46913 * 300.00090 * 23 21 19 27 27 C 1.39771 * 117.70179 * 0.24804 * 5 4 3 28 28 C 1.50703 * 120.17131 * 179.72568 * 27 5 4 29 29 N 1.31895 * 119.65587 * 359.48963 * 27 5 4 30 30 N 1.28266 * 122.33025 * 0.53682 * 29 27 5 31 31 H 1.09004 * 109.47039 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46989 * 299.99670 * 1 2 3 33 33 H 1.08997 * 109.47301 * 60.00322 * 1 2 3 34 34 H 1.09003 * 109.47153 * 239.99609 * 2 1 3 35 35 H 1.09003 * 109.46961 * 119.99986 * 2 1 3 36 36 H 1.08001 * 121.09436 * 0.02562 * 4 3 2 37 37 H 0.97002 * 120.00186 * 359.97438 * 8 6 5 38 38 H 1.08998 * 110.64619 * 122.94108 * 11 9 8 39 39 H 1.09000 * 110.49586 * 359.97438 * 11 9 8 40 40 H 1.09003 * 110.62495 * 190.31370 * 14 12 11 41 41 H 1.09000 * 110.62760 * 313.17540 * 14 12 11 42 42 H 1.09001 * 110.62524 * 118.49455 * 15 14 12 43 43 H 1.09002 * 110.62449 * 241.50433 * 15 14 12 44 44 H 0.97001 * 119.99532 * 0.36601 * 22 21 19 45 45 H 1.09000 * 109.46947 * 83.64159 * 28 27 5 46 46 H 1.08991 * 109.47816 * 203.64575 * 28 27 5 47 47 H 1.09006 * 109.47314 * 323.64840 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9120 1.8448 0.9827 5 6 3.3500 3.1746 0.9385 6 6 4.2902 3.7059 1.9525 7 8 4.7172 4.8389 1.8505 8 7 4.6722 2.9324 2.9880 9 6 5.6025 3.4575 3.9905 10 1 5.4612 4.5307 4.1187 11 6 7.0589 3.1409 3.5940 12 6 7.5702 2.2473 4.7639 13 1 8.4347 1.6201 4.5465 14 6 7.7298 3.2165 5.9739 15 6 6.2685 3.5345 6.3758 16 6 5.4234 2.7140 5.3484 17 1 4.3973 2.4979 5.6456 18 7 6.3112 1.5198 5.1420 19 6 6.0513 0.1802 5.2572 20 1 5.1772 -0.1560 5.7950 21 6 6.9114 -0.7456 4.6827 22 7 7.6317 -0.4118 3.6328 23 14 7.0467 -2.4652 5.3996 24 1 8.0253 -3.2551 4.6098 25 1 5.7192 -3.1288 5.3481 26 1 7.5027 -2.3790 6.8102 27 6 2.8647 3.9846 -0.0921 28 6 3.2945 5.4258 -0.1890 29 7 2.0323 3.4798 -0.9819 30 7 1.6350 2.2611 -0.9357 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.2498 1.1719 1.7570 37 1 4.3312 2.0279 3.0695 38 1 7.6461 4.0566 3.5253 39 1 7.0875 2.5932 2.6520 40 1 8.2550 2.7249 6.7929 41 1 8.2539 4.1235 5.6728 42 1 6.0690 3.2008 7.3941 43 1 6.0655 4.6005 6.2734 44 1 7.5654 0.4829 3.2638 45 1 4.2517 5.4854 -0.7071 46 1 2.5457 5.9919 -0.7428 47 1 3.3973 5.8425 0.8130 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097581382.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:38:49 Heat of formation + Delta-G solvation = 39.728978 kcal Electronic energy + Delta-G solvation = -29085.811260 eV Core-core repulsion = 25269.255017 eV Total energy + Delta-G solvation = -3816.556243 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.58467 -41.37505 -40.00013 -36.42215 -35.55529 -34.87554 -34.49931 -32.57817 -30.90264 -30.56205 -29.65787 -28.75490 -26.96544 -25.88691 -24.53120 -23.97116 -22.74947 -21.66464 -21.49699 -20.45595 -19.46977 -18.83718 -18.69231 -17.25728 -16.86732 -16.84408 -16.48985 -16.26125 -15.69163 -15.54684 -15.49546 -15.31442 -14.99153 -14.90297 -14.40252 -14.15655 -13.96301 -13.49533 -13.37804 -13.29553 -13.16513 -12.94183 -12.78280 -12.59424 -12.39536 -12.23552 -12.16128 -11.96652 -11.93519 -11.88533 -11.63543 -11.50089 -11.43945 -11.34192 -11.09413 -10.65711 -10.57316 -10.51872 -10.09448 -8.95880 -8.31557 -5.21964 -0.88852 -0.33517 1.55272 1.60226 1.67652 1.84937 1.88833 2.37330 2.62790 2.76490 3.05834 3.20246 3.20700 3.34995 3.44393 3.56757 3.84759 3.92836 3.93249 4.05514 4.11921 4.27569 4.31136 4.35212 4.36965 4.46856 4.50484 4.53314 4.59251 4.65650 4.67028 4.79487 4.86645 4.87534 4.98762 5.01934 5.04925 5.06575 5.12400 5.20266 5.28643 5.35024 5.36925 5.45792 5.55849 5.68272 6.31605 6.35337 6.86048 6.94084 7.46275 7.71416 8.49164 9.12344 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010667 B = 0.004337 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.247791 B = 6453.789220 C = 8408.421935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.071 4.071 3 C 0.063 3.937 4 C -0.072 4.072 5 C -0.139 4.139 6 C 0.561 3.439 7 O -0.545 6.545 8 N -0.693 5.693 9 C 0.138 3.862 10 H 0.100 0.900 11 C -0.130 4.130 12 C 0.131 3.869 13 H 0.066 0.934 14 C -0.126 4.126 15 C -0.115 4.115 16 C 0.126 3.874 17 H 0.100 0.900 18 N -0.615 5.615 19 C -0.323 4.323 20 H 0.064 0.936 21 C -0.074 4.074 22 N -0.951 5.951 23 Si 1.112 2.888 24 H -0.300 1.300 25 H -0.273 1.273 26 H -0.288 1.288 27 C 0.108 3.892 28 C -0.098 4.098 29 N -0.263 5.263 30 N -0.239 5.239 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.169 0.831 37 H 0.404 0.596 38 H 0.079 0.921 39 H 0.034 0.966 40 H 0.048 0.952 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.261 0.739 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.063 6.163 -1.613 11.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.082 4.082 4 C -0.101 4.101 5 C -0.153 4.153 6 C 0.347 3.653 7 O -0.424 6.424 8 N -0.342 5.342 9 C 0.032 3.968 10 H 0.118 0.882 11 C -0.171 4.171 12 C 0.024 3.976 13 H 0.084 0.916 14 C -0.165 4.165 15 C -0.155 4.155 16 C 0.019 3.981 17 H 0.118 0.882 18 N -0.338 5.338 19 C -0.451 4.451 20 H 0.082 0.918 21 C -0.271 4.271 22 N -0.595 5.595 23 Si 0.938 3.062 24 H -0.227 1.227 25 H -0.199 1.199 26 H -0.215 1.215 27 C -0.037 4.037 28 C -0.156 4.156 29 N -0.105 5.105 30 N -0.081 5.081 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.186 0.814 37 H 0.240 0.760 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.072 0.928 45 H 0.105 0.895 46 H 0.108 0.892 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.989 5.526 -3.152 11.843 hybrid contribution 0.380 0.528 1.198 1.364 sum -9.608 6.054 -1.954 11.524 Atomic orbital electron populations 1.21680 0.92837 1.03328 1.02044 1.20647 0.97941 0.87035 1.05340 1.23281 0.93977 0.99721 0.91210 1.22879 0.93626 0.94858 0.98767 1.21155 1.00203 0.95671 0.98275 1.17977 0.80773 0.85283 0.81251 1.90690 1.56879 1.18798 1.76058 1.45917 1.46266 1.17322 1.24708 1.22465 0.87626 0.98263 0.88416 0.88196 1.23201 0.96549 0.99183 0.98137 1.22957 0.90165 0.90931 0.93527 0.91566 1.22894 0.97205 0.98675 0.97762 1.22898 0.94447 0.99621 0.98532 1.23495 0.95184 0.86863 0.92561 0.88211 1.46748 1.06172 1.00281 1.80631 1.19853 1.12335 0.81387 1.31539 0.91847 1.26790 0.98345 1.06752 0.95203 1.70906 1.47352 1.21937 1.19290 0.82839 0.76514 0.72000 0.74822 1.22657 1.19890 1.21493 1.23355 0.91495 0.99526 0.89288 1.20934 1.02145 0.87078 1.05405 1.73003 1.10048 1.06050 1.21372 1.72661 1.17811 0.97681 1.19957 0.89781 0.93096 0.92503 0.88400 0.88014 0.81390 0.75997 0.90268 0.94678 0.93346 0.90148 0.91720 0.89460 0.92841 0.89502 0.89250 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.78 71.98 0.70 -1.63 16 2 C -0.07 -1.31 6.35 29.85 0.19 -1.12 16 3 C 0.06 1.58 6.25 42.62 0.27 1.85 16 4 C -0.07 -1.85 9.30 22.79 0.21 -1.64 16 5 C -0.14 -4.04 5.92 -19.83 -0.12 -4.15 16 6 C 0.56 17.67 7.75 86.87 0.67 18.34 16 7 O -0.54 -18.65 13.14 -3.73 -0.05 -18.70 16 8 N -0.69 -21.91 5.01 -438.53 -2.20 -24.11 16 9 C 0.14 4.50 2.79 46.39 0.13 4.63 16 10 H 0.10 3.04 7.24 -2.38 -0.02 3.02 16 11 C -0.13 -4.80 6.07 31.99 0.19 -4.61 16 12 C 0.13 5.41 3.81 46.23 0.18 5.58 16 13 H 0.07 3.25 6.73 -2.39 -0.02 3.23 16 14 C -0.13 -4.15 6.44 32.21 0.21 -3.94 16 15 C -0.12 -3.37 6.46 32.38 0.21 -3.17 16 16 C 0.13 4.26 5.08 46.39 0.24 4.50 16 17 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 18 N -0.62 -26.79 2.83 -614.40 -1.74 -28.53 16 19 C -0.32 -16.13 10.38 84.03 0.87 -15.26 16 20 H 0.06 3.13 7.96 -2.91 -0.02 3.11 16 21 C -0.07 -3.91 5.28 84.86 0.45 -3.46 16 22 N -0.95 -54.30 12.84 21.65 0.28 -54.02 16 23 Si 1.11 48.02 30.00 68.60 2.06 50.08 16 24 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 25 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 26 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 27 C 0.11 3.15 6.91 42.92 0.30 3.44 16 28 C -0.10 -2.44 9.00 71.24 0.64 -1.80 16 29 N -0.26 -8.06 11.42 -46.93 -0.54 -8.60 16 30 N -0.24 -6.99 11.04 -47.69 -0.53 -7.51 16 31 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 1.06 7.96 -2.39 -0.02 1.04 16 34 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.10 1.60 7.92 -2.39 -0.02 1.58 16 36 H 0.17 3.86 6.58 -2.91 -0.02 3.84 16 37 H 0.40 12.78 6.87 -92.71 -0.64 12.15 16 38 H 0.08 2.59 7.82 -2.39 -0.02 2.57 16 39 H 0.03 1.48 7.53 -2.39 -0.02 1.46 16 40 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 41 H 0.08 2.23 7.82 -2.39 -0.02 2.21 16 42 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.09 2.05 7.83 -2.39 -0.02 2.03 16 44 H 0.26 14.88 5.73 -92.71 -0.53 14.35 16 45 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.10 2.61 5.89 -2.38 -0.01 2.60 16 Total: -1.00 -63.87 374.16 3.22 -60.65 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 0.60 Total: 33.16 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 5.34 Total: -2.42 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -4.72 Total: -122.77 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.05 Total: -18.70 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.06 Total: 50.08 kcal Total: -63.87 3.22 -60.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097581382.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.380 kcal (2) G-P(sol) polarization free energy of solvation -63.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds