Wall clock time and date at job start Sat Apr 11 2020 02:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46492 * 109.47300 * 2 1 4 4 C 1.34779 * 120.00341 * 261.75546 * 3 2 1 5 5 O 1.21281 * 120.00481 * 186.60577 * 4 3 2 6 6 C 1.50705 * 119.99354 * 6.60363 * 4 3 2 7 7 C 1.53001 * 109.47374 * 283.55353 * 6 4 3 8 8 C 1.52998 * 109.46974 * 180.02562 * 7 6 4 9 9 C 1.52998 * 109.47029 * 60.00030 * 8 7 6 10 10 F 1.39905 * 109.46985 * 179.97438 * 9 8 7 11 11 F 1.39900 * 109.47275 * 60.00247 * 9 8 7 12 12 C 1.52992 * 109.47392 * 299.99898 * 9 8 7 13 13 C 1.52999 * 109.47472 * 60.00150 * 12 9 8 14 14 C 1.46505 * 120.00222 * 81.75358 * 3 2 1 15 15 H 1.08997 * 110.64282 * 175.76498 * 14 3 2 16 16 C 1.55157 * 110.71687 * 52.62197 * 14 3 2 17 17 C 1.54908 * 101.61854 * 276.94457 * 16 14 3 18 18 N 1.47468 * 104.81318 * 323.04337 * 17 16 14 19 19 C 1.36932 * 125.63238 * 204.07106 * 18 17 16 20 20 H 1.07996 * 119.99968 * 179.97438 * 19 18 17 21 21 C 1.38811 * 119.99969 * 0.02562 * 19 18 17 22 22 N 1.31618 * 119.99821 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00344 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47012 * 89.99619 * 23 21 19 25 25 H 1.48499 * 109.47332 * 209.99634 * 23 21 19 26 26 H 1.48496 * 109.47118 * 330.00276 * 23 21 19 27 27 C 1.47031 * 108.72025 * 24.06996 * 18 17 16 28 28 H 1.08997 * 109.47683 * 292.49971 * 1 2 3 29 29 H 1.09007 * 109.46936 * 52.50359 * 1 2 3 30 30 H 1.09004 * 109.47125 * 172.49310 * 1 2 3 31 31 H 1.08997 * 109.47261 * 239.99570 * 2 1 3 32 32 H 1.09007 * 109.46654 * 119.99959 * 2 1 3 33 33 H 1.09004 * 109.47107 * 43.55858 * 6 4 3 34 34 H 1.09000 * 109.46756 * 300.00047 * 7 6 4 35 35 H 1.08996 * 109.47033 * 60.00061 * 7 6 4 36 36 H 1.08998 * 109.47358 * 299.99976 * 8 7 6 37 37 H 1.08997 * 109.46618 * 179.97438 * 8 7 6 38 38 H 1.09004 * 109.47265 * 300.00170 * 12 9 8 39 39 H 1.09006 * 109.47283 * 180.02562 * 12 9 8 40 40 H 1.08997 * 109.47139 * 180.02562 * 13 12 9 41 41 H 1.08998 * 109.47176 * 60.00015 * 13 12 9 42 42 H 1.09003 * 111.00455 * 35.03922 * 16 14 3 43 43 H 1.09001 * 111.00124 * 158.85050 * 16 14 3 44 44 H 1.08994 * 110.36404 * 81.85320 * 17 16 14 45 45 H 1.09001 * 110.36656 * 204.17344 * 17 16 14 46 46 H 0.97005 * 120.00416 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.88047 * 239.55959 * 27 18 17 48 48 H 1.09000 * 109.87919 * 118.39131 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.4008 1.9607 -1.1551 5 8 2.9163 3.0585 -1.1413 6 6 2.1879 1.2447 -2.4640 7 6 3.2416 0.1466 -2.6219 8 6 3.0257 -0.5799 -3.9510 9 6 3.1521 0.4179 -5.1040 10 9 2.9553 -0.2465 -6.3194 11 9 4.4284 0.9905 -5.0875 12 6 2.0985 1.5159 -4.9461 13 6 2.3142 2.2425 -3.6170 14 6 2.0910 2.1325 1.2556 15 1 2.5427 3.1109 1.0924 16 6 2.8803 1.3352 2.3274 17 6 1.7850 0.3917 2.8839 18 7 0.5544 1.2044 2.8891 19 6 -0.5363 0.9953 3.6902 20 1 -1.3925 1.6496 3.6183 21 6 -0.5410 -0.0570 4.5955 22 7 0.5027 -0.8541 4.6834 23 14 -2.0286 -0.3419 5.6888 24 1 -2.9793 -1.2537 5.0033 25 1 -1.5918 -0.9539 6.9694 26 1 -2.6973 0.9553 5.9628 27 6 0.6924 2.2761 1.8921 28 1 -0.3634 0.3932 0.9494 29 1 -0.3633 0.6256 -0.8154 30 1 -0.3633 -1.0189 -0.1343 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.1934 0.7985 -2.4765 34 1 4.2360 0.5929 -2.6095 35 1 3.1519 -0.5639 -1.8003 36 1 2.0313 -1.0260 -3.9640 37 1 3.7767 -1.3618 -4.0637 38 1 1.1040 1.0698 -4.9589 39 1 2.1882 2.2265 -5.7678 40 1 1.5633 3.0245 -3.5043 41 1 3.3086 2.6887 -3.6041 42 1 3.6916 0.7667 1.8727 43 1 3.2587 1.9970 3.1065 44 1 1.6644 -0.4746 2.2336 45 1 2.0356 0.0751 3.8964 46 1 0.4993 -1.5897 5.3158 47 1 0.6043 3.2479 2.3778 48 1 -0.0760 2.1710 1.1262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033973708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:39:55 Heat of formation + Delta-G solvation = -103.664579 kcal Electronic energy + Delta-G solvation = -30683.730016 eV Core-core repulsion = 26410.266576 eV Total energy + Delta-G solvation = -4273.463440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.16926 -47.15193 -40.49966 -38.16832 -36.83396 -34.75292 -32.41499 -31.43256 -30.51019 -30.30306 -29.04050 -27.37736 -24.61026 -23.90175 -23.50002 -22.56737 -21.02121 -20.25199 -19.92601 -18.61705 -17.59715 -17.34744 -17.09667 -16.88369 -16.47329 -16.04785 -15.11479 -14.77988 -14.53038 -14.35249 -14.04076 -13.82919 -13.68348 -13.53243 -13.43904 -13.20291 -12.97133 -12.86083 -12.53945 -12.39847 -12.18309 -12.07696 -11.91707 -11.75980 -11.64936 -11.49176 -11.17516 -11.07333 -11.00301 -10.88737 -10.84148 -10.63596 -10.42282 -10.17722 -10.02945 -9.88634 -9.59858 -9.29943 -8.70692 -8.22098 -6.88170 -5.72374 -3.13798 2.76176 3.20455 3.35006 3.41302 3.42420 3.50757 3.79991 4.03942 4.09564 4.43338 4.56364 4.63842 4.66056 4.78181 4.94451 5.06166 5.17447 5.30594 5.33321 5.38636 5.43080 5.45444 5.47814 5.50430 5.62742 5.68495 5.69783 5.76000 5.79276 5.87472 5.93318 6.06776 6.14328 6.23564 6.28316 6.35356 6.52442 6.62766 6.66937 6.96855 7.04099 7.43387 7.56404 7.73111 7.79496 8.28295 8.39132 9.14946 9.75629 10.39859 11.30930 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.024588 B = 0.002988 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.490593 B = 9368.125595 C = 9714.386993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.079 3.921 3 N -0.587 5.587 4 C 0.519 3.481 5 O -0.549 6.549 6 C -0.111 4.111 7 C -0.116 4.116 8 C -0.155 4.155 9 C 0.287 3.713 10 F -0.205 7.205 11 F -0.198 7.198 12 C -0.157 4.157 13 C -0.099 4.099 14 C 0.125 3.875 15 H 0.098 0.902 16 C -0.156 4.156 17 C 0.143 3.857 18 N -0.598 5.598 19 C -0.222 4.222 20 H 0.076 0.924 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.123 3.877 28 H 0.100 0.900 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.028 0.972 45 H 0.106 0.894 46 H 0.252 0.748 47 H 0.029 0.971 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.355 -0.060 -17.294 17.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.043 4.043 3 N -0.318 5.318 4 C 0.306 3.694 5 O -0.427 6.427 6 C -0.132 4.132 7 C -0.154 4.154 8 C -0.193 4.193 9 C 0.251 3.749 10 F -0.186 7.186 11 F -0.179 7.179 12 C -0.195 4.195 13 C -0.137 4.137 14 C 0.022 3.978 15 H 0.116 0.884 16 C -0.195 4.195 17 C 0.019 3.981 18 N -0.324 5.324 19 C -0.350 4.350 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 C -0.004 4.004 28 H 0.119 0.881 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.123 0.877 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.572 0.380 -17.124 17.728 hybrid contribution -0.822 -0.319 0.381 0.960 sum 3.750 0.062 -16.743 17.158 Atomic orbital electron populations 1.22419 0.95384 1.01409 1.04597 1.22320 0.95682 0.82201 1.04079 1.47923 1.62938 1.14281 1.06702 1.20388 0.77907 0.85935 0.85149 1.90659 1.43654 1.21223 1.87188 1.21422 1.01475 0.96989 0.93342 1.21659 0.99751 0.97250 0.96720 1.22511 1.05567 0.97898 0.93329 1.21152 0.80949 0.90802 0.82041 1.93004 1.95140 1.82264 1.48155 1.93003 1.42336 1.85921 1.96658 1.22544 0.98771 0.97597 1.00588 1.21328 1.04820 0.97213 0.90361 1.22106 0.97347 0.95662 0.82716 0.88434 1.23366 0.98794 1.00044 0.97326 1.22273 0.82931 0.90491 1.02450 1.44494 1.15962 1.30561 1.41405 1.19042 0.93280 1.10217 1.12503 0.90583 1.24742 0.97970 0.97850 0.99799 1.69784 1.28510 1.19352 1.39288 0.86108 0.81768 0.77799 0.80023 1.21679 1.21706 1.20767 1.21771 0.93790 0.92818 0.92018 0.88099 0.94044 0.92574 0.91030 0.87492 0.88267 0.90096 0.89011 0.88412 0.89045 0.88674 0.89203 0.89962 0.89741 0.92045 0.91059 0.95496 0.87682 0.93740 0.95291 0.94912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 9.11 37.16 0.34 -2.40 16 2 C 0.08 1.12 4.94 -4.05 -0.02 1.10 16 3 N -0.59 -9.05 2.52 -164.03 -0.41 -9.47 16 4 C 0.52 7.71 6.88 -10.98 -0.08 7.64 16 5 O -0.55 -9.93 15.39 5.56 0.09 -9.84 16 6 C -0.11 -1.20 1.69 -91.76 -0.15 -1.35 16 7 C -0.12 -1.09 4.75 -26.73 -0.13 -1.22 16 8 C -0.16 -1.23 5.45 -26.73 -0.15 -1.38 16 9 C 0.29 2.72 2.10 -26.74 -0.06 2.67 16 10 F -0.20 -2.16 17.06 2.25 0.04 -2.12 16 11 F -0.20 -2.30 16.02 2.25 0.04 -2.26 16 12 C -0.16 -1.30 5.45 -26.74 -0.15 -1.44 16 13 C -0.10 -1.02 4.51 -26.73 -0.12 -1.14 16 14 C 0.13 2.22 3.57 -66.09 -0.24 1.98 16 15 H 0.10 1.77 7.01 -51.93 -0.36 1.41 16 16 C -0.16 -2.83 6.34 -24.58 -0.16 -2.99 16 17 C 0.14 3.12 5.17 -2.51 -0.01 3.11 16 18 N -0.60 -13.92 2.23 -170.04 -0.38 -14.30 16 19 C -0.22 -5.77 10.18 -15.06 -0.15 -5.92 16 20 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 22 N -0.92 -25.10 10.09 55.49 0.56 -24.54 16 23 Si 0.91 21.14 29.55 -169.99 -5.02 16.12 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.12 2.45 5.90 -3.06 -0.02 2.44 16 28 H 0.10 1.96 4.67 -51.93 -0.24 1.71 16 29 H 0.04 0.57 7.72 -51.93 -0.40 0.16 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.79 4.08 -51.93 -0.21 0.58 16 32 H 0.11 1.75 4.13 -51.92 -0.21 1.53 16 33 H 0.10 0.95 7.08 -51.93 -0.37 0.58 16 34 H 0.08 0.86 7.80 -51.93 -0.41 0.45 16 35 H 0.09 0.82 5.64 -51.93 -0.29 0.52 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.00 7.59 -51.93 -0.39 0.61 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.03 0.61 4.90 -51.93 -0.25 0.35 16 45 H 0.11 2.68 5.88 -51.93 -0.31 2.37 16 46 H 0.25 6.74 8.31 -40.82 -0.34 6.41 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.03 0.66 6.10 -51.93 -0.32 0.34 16 LS Contribution 357.73 15.07 5.39 5.39 Total: -1.00 -29.12 357.73 -8.00 -37.12 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.12 Total: 3.13 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.18 Total: 0.78 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.23 Total: -48.31 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.07 Total: -4.39 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.12 -8.00 -37.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033973708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.545 kcal (2) G-P(sol) polarization free energy of solvation -29.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds