Wall clock time and date at job start Sat Apr 11 2020 02:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46492 * 109.47300 * 2 1 4 4 C 1.34779 * 120.00341 * 261.75546 * 3 2 1 5 5 O 1.21281 * 120.00481 * 186.60577 * 4 3 2 6 6 C 1.50705 * 119.99354 * 6.60363 * 4 3 2 7 7 C 1.53001 * 109.47374 * 283.55353 * 6 4 3 8 8 C 1.52998 * 109.46974 * 180.02562 * 7 6 4 9 9 C 1.52998 * 109.47029 * 60.00030 * 8 7 6 10 10 F 1.39905 * 109.46985 * 179.97438 * 9 8 7 11 11 F 1.39900 * 109.47275 * 60.00247 * 9 8 7 12 12 C 1.52992 * 109.47392 * 299.99898 * 9 8 7 13 13 C 1.52999 * 109.47472 * 60.00150 * 12 9 8 14 14 C 1.46505 * 120.00222 * 81.75358 * 3 2 1 15 15 H 1.08997 * 110.64282 * 175.76498 * 14 3 2 16 16 C 1.55157 * 110.71687 * 52.62197 * 14 3 2 17 17 C 1.54908 * 101.61854 * 276.94457 * 16 14 3 18 18 N 1.47468 * 104.81318 * 323.04337 * 17 16 14 19 19 C 1.36932 * 125.63238 * 204.07106 * 18 17 16 20 20 H 1.07996 * 119.99968 * 179.97438 * 19 18 17 21 21 C 1.38811 * 119.99969 * 0.02562 * 19 18 17 22 22 N 1.31618 * 119.99821 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00344 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47012 * 89.99619 * 23 21 19 25 25 H 1.48499 * 109.47332 * 209.99634 * 23 21 19 26 26 H 1.48496 * 109.47118 * 330.00276 * 23 21 19 27 27 C 1.47031 * 108.72025 * 24.06996 * 18 17 16 28 28 H 1.08997 * 109.47683 * 292.49971 * 1 2 3 29 29 H 1.09007 * 109.46936 * 52.50359 * 1 2 3 30 30 H 1.09004 * 109.47125 * 172.49310 * 1 2 3 31 31 H 1.08997 * 109.47261 * 239.99570 * 2 1 3 32 32 H 1.09007 * 109.46654 * 119.99959 * 2 1 3 33 33 H 1.09004 * 109.47107 * 43.55858 * 6 4 3 34 34 H 1.09000 * 109.46756 * 300.00047 * 7 6 4 35 35 H 1.08996 * 109.47033 * 60.00061 * 7 6 4 36 36 H 1.08998 * 109.47358 * 299.99976 * 8 7 6 37 37 H 1.08997 * 109.46618 * 179.97438 * 8 7 6 38 38 H 1.09004 * 109.47265 * 300.00170 * 12 9 8 39 39 H 1.09006 * 109.47283 * 180.02562 * 12 9 8 40 40 H 1.08997 * 109.47139 * 180.02562 * 13 12 9 41 41 H 1.08998 * 109.47176 * 60.00015 * 13 12 9 42 42 H 1.09003 * 111.00455 * 35.03922 * 16 14 3 43 43 H 1.09001 * 111.00124 * 158.85050 * 16 14 3 44 44 H 1.08994 * 110.36404 * 81.85320 * 17 16 14 45 45 H 1.09001 * 110.36656 * 204.17344 * 17 16 14 46 46 H 0.97005 * 120.00416 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.88047 * 239.55959 * 27 18 17 48 48 H 1.09000 * 109.87919 * 118.39131 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.4008 1.9607 -1.1551 5 8 2.9163 3.0585 -1.1413 6 6 2.1879 1.2447 -2.4640 7 6 3.2416 0.1466 -2.6219 8 6 3.0257 -0.5799 -3.9510 9 6 3.1521 0.4179 -5.1040 10 9 2.9553 -0.2465 -6.3194 11 9 4.4284 0.9905 -5.0875 12 6 2.0985 1.5159 -4.9461 13 6 2.3142 2.2425 -3.6170 14 6 2.0910 2.1325 1.2556 15 1 2.5427 3.1109 1.0924 16 6 2.8803 1.3352 2.3274 17 6 1.7850 0.3917 2.8839 18 7 0.5544 1.2044 2.8891 19 6 -0.5363 0.9953 3.6902 20 1 -1.3925 1.6496 3.6183 21 6 -0.5410 -0.0570 4.5955 22 7 0.5027 -0.8541 4.6834 23 14 -2.0286 -0.3419 5.6888 24 1 -2.9793 -1.2537 5.0033 25 1 -1.5918 -0.9539 6.9694 26 1 -2.6973 0.9553 5.9628 27 6 0.6924 2.2761 1.8921 28 1 -0.3634 0.3932 0.9494 29 1 -0.3633 0.6256 -0.8154 30 1 -0.3633 -1.0189 -0.1343 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.1934 0.7985 -2.4765 34 1 4.2360 0.5929 -2.6095 35 1 3.1519 -0.5639 -1.8003 36 1 2.0313 -1.0260 -3.9640 37 1 3.7767 -1.3618 -4.0637 38 1 1.1040 1.0698 -4.9589 39 1 2.1882 2.2265 -5.7678 40 1 1.5633 3.0245 -3.5043 41 1 3.3086 2.6887 -3.6041 42 1 3.6916 0.7667 1.8727 43 1 3.2587 1.9970 3.1065 44 1 1.6644 -0.4746 2.2336 45 1 2.0356 0.0751 3.8964 46 1 0.4993 -1.5897 5.3158 47 1 0.6043 3.2479 2.3778 48 1 -0.0760 2.1710 1.1262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033973708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:39:55 Heat of formation + Delta-G solvation = -118.109503 kcal Electronic energy + Delta-G solvation = -30684.356395 eV Core-core repulsion = 26410.266576 eV Total energy + Delta-G solvation = -4274.089819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.93256 -47.93223 -41.70655 -39.49249 -37.88080 -36.22788 -34.13623 -32.16144 -31.90147 -31.27556 -30.63617 -28.94759 -26.39172 -24.93744 -24.27851 -23.69083 -22.13855 -21.97054 -20.90820 -19.86461 -18.92517 -18.51611 -18.34065 -17.74636 -17.37600 -17.19496 -16.66375 -16.21805 -15.72918 -15.61642 -15.23375 -15.03321 -14.75452 -14.55471 -14.28227 -14.21234 -14.05767 -14.00492 -13.67973 -13.65750 -13.44372 -13.25910 -13.11774 -12.93968 -12.84046 -12.75965 -12.63311 -12.38535 -12.25849 -12.22319 -12.15548 -12.00450 -11.82804 -11.69576 -11.41134 -11.35897 -11.06597 -10.70040 -10.46423 -9.58647 -8.77717 -7.71732 -5.13832 1.49880 1.51100 1.58779 1.59784 2.00239 2.52960 2.82590 3.12976 3.22149 3.38900 3.42638 3.65989 3.76954 3.81323 3.84824 3.95183 4.05980 4.08379 4.11740 4.28185 4.32323 4.34390 4.47098 4.54453 4.63190 4.65770 4.68437 4.77339 4.80977 4.84897 4.89273 4.95030 4.97603 5.00055 5.05908 5.08599 5.17788 5.22522 5.28667 5.53104 5.62677 5.70201 5.77302 5.89984 6.37062 6.53327 7.16771 7.19179 7.83208 8.47081 9.28969 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.024588 B = 0.002988 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.490593 B = 9368.125595 C = 9714.386993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.084 3.916 3 N -0.588 5.588 4 C 0.517 3.483 5 O -0.584 6.584 6 C -0.104 4.104 7 C -0.112 4.112 8 C -0.149 4.149 9 C 0.278 3.722 10 F -0.211 7.211 11 F -0.215 7.215 12 C -0.150 4.150 13 C -0.096 4.096 14 C 0.136 3.864 15 H 0.095 0.905 16 C -0.142 4.142 17 C 0.149 3.851 18 N -0.610 5.610 19 C -0.230 4.230 20 H 0.074 0.926 21 C -0.056 4.056 22 N -0.941 5.941 23 Si 0.970 3.030 24 H -0.287 1.287 25 H -0.297 1.297 26 H -0.277 1.277 27 C 0.125 3.875 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.123 0.877 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.029 0.971 45 H 0.068 0.932 46 H 0.246 0.754 47 H 0.021 0.979 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.698 -0.908 -19.204 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.037 4.037 3 N -0.318 5.318 4 C 0.307 3.693 5 O -0.464 6.464 6 C -0.125 4.125 7 C -0.149 4.149 8 C -0.187 4.187 9 C 0.242 3.758 10 F -0.192 7.192 11 F -0.196 7.196 12 C -0.188 4.188 13 C -0.134 4.134 14 C 0.032 3.968 15 H 0.113 0.887 16 C -0.182 4.182 17 C 0.025 3.975 18 N -0.336 5.336 19 C -0.359 4.359 20 H 0.092 0.908 21 C -0.250 4.250 22 N -0.591 5.591 23 Si 0.800 3.200 24 H -0.214 1.214 25 H -0.224 1.224 26 H -0.202 1.202 27 C -0.001 4.001 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.141 0.859 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.141 0.859 37 H 0.118 0.882 38 H 0.138 0.862 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.046 0.954 45 H 0.086 0.914 46 H 0.056 0.944 47 H 0.039 0.961 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.915 -0.462 -19.060 19.463 hybrid contribution -0.605 0.003 0.937 1.115 sum 3.310 -0.458 -18.123 18.428 Atomic orbital electron populations 1.22316 0.95921 1.02217 1.02846 1.22322 0.95090 0.81406 1.04927 1.47952 1.63098 1.14663 1.06117 1.21127 0.76607 0.85569 0.86027 1.90649 1.45075 1.22987 1.87711 1.21475 1.03130 0.97150 0.90728 1.21615 0.98407 0.96865 0.98061 1.22524 1.07425 0.97382 0.91356 1.21495 0.80454 0.91552 0.82311 1.92992 1.95114 1.82388 1.48661 1.92976 1.43641 1.86280 1.96730 1.22525 0.99592 0.97341 0.99342 1.21256 1.03507 0.97268 0.91337 1.21811 0.95493 0.95861 0.83672 0.88729 1.23212 0.98189 0.99351 0.97400 1.22076 0.83549 0.91310 1.00562 1.44617 1.15778 1.31439 1.41748 1.19287 0.94027 1.09959 1.12673 0.90830 1.25404 1.00270 0.98065 1.01213 1.70011 1.29795 1.19591 1.39729 0.85198 0.79134 0.77618 0.78065 1.21384 1.22357 1.20196 1.21807 0.95401 0.91424 0.91447 0.92375 0.92295 0.91358 0.87057 0.89621 0.85914 0.91652 0.88066 0.85870 0.88164 0.86184 0.88722 0.90132 0.91987 0.90110 0.91343 0.95410 0.91415 0.94434 0.96084 0.94616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.94 9.11 71.98 0.66 -4.29 16 2 C 0.08 2.17 4.94 86.38 0.43 2.60 16 3 N -0.59 -17.13 2.52 -791.25 -1.99 -19.12 16 4 C 0.52 14.42 6.88 87.66 0.60 15.02 16 5 O -0.58 -20.67 15.39 -3.03 -0.05 -20.71 16 6 C -0.10 -1.93 1.69 -11.54 -0.02 -1.95 16 7 C -0.11 -1.75 4.75 30.59 0.15 -1.61 16 8 C -0.15 -1.81 5.45 30.59 0.17 -1.64 16 9 C 0.28 4.52 2.10 30.59 0.06 4.59 16 10 F -0.21 -3.89 17.06 44.97 0.77 -3.12 16 11 F -0.21 -4.70 16.02 44.97 0.72 -3.98 16 12 C -0.15 -2.03 5.45 30.59 0.17 -1.87 16 13 C -0.10 -1.75 4.51 30.60 0.14 -1.62 16 14 C 0.14 4.74 3.57 46.18 0.16 4.91 16 15 H 0.09 3.40 7.01 -2.39 -0.02 3.39 16 16 C -0.14 -5.13 6.34 31.99 0.20 -4.92 16 17 C 0.15 6.62 5.17 86.85 0.45 7.07 16 18 N -0.61 -28.77 2.23 -691.87 -1.55 -30.31 16 19 C -0.23 -12.12 10.18 84.03 0.86 -11.26 16 20 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 21 C -0.06 -3.01 5.49 84.86 0.47 -2.54 16 22 N -0.94 -52.32 10.09 21.65 0.22 -52.11 16 23 Si 0.97 43.81 29.55 68.60 2.03 45.83 16 24 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.30 -13.60 7.11 99.48 0.71 -12.90 16 26 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 27 C 0.13 5.03 5.90 86.73 0.51 5.54 16 28 H 0.06 2.20 4.67 -2.39 -0.01 2.19 16 29 H 0.06 1.43 7.72 -2.38 -0.02 1.41 16 30 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.11 2.01 4.08 -2.39 -0.01 2.00 16 32 H 0.09 2.67 4.13 -2.38 -0.01 2.66 16 33 H 0.12 1.76 7.08 -2.38 -0.02 1.75 16 34 H 0.06 1.26 7.80 -2.39 -0.02 1.24 16 35 H 0.10 1.40 5.64 -2.39 -0.01 1.38 16 36 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.06 1.43 7.59 -2.39 -0.02 1.41 16 42 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.03 1.26 4.90 -2.39 -0.01 1.24 16 45 H 0.07 3.56 5.88 -2.39 -0.01 3.54 16 46 H 0.25 13.43 8.31 -92.70 -0.77 12.66 16 47 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.04 1.43 6.10 -2.39 -0.01 1.41 16 Total: -1.00 -64.52 357.73 6.13 -58.40 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.98 Total: 17.09 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 5.00 Total: 8.03 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -3.32 Total: -101.54 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.05 Total: -20.71 kcal Atomic # 9 Polarization: -8.58 SS G_CDS: 1.49 Total: -7.10 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -64.52 6.13 -58.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033973708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.714 kcal (2) G-P(sol) polarization free energy of solvation -64.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds