Wall clock time and date at job start Sat Apr 11 2020 02:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32725 * 125.19355 * 2 1 4 4 C 1.32858 * 109.74624 * 179.97438 * 3 2 1 5 5 N 1.33790 * 132.41730 * 179.97438 * 4 3 2 6 6 C 1.31650 * 121.22734 * 180.02562 * 5 4 3 7 7 C 1.50696 * 119.78432 * 179.97438 * 6 5 4 8 8 C 1.39257 * 120.42903 * 0.02562 * 6 5 4 9 9 C 1.38156 * 119.02069 * 359.97438 * 8 6 5 10 10 N 1.37706 * 120.64997 * 180.02562 * 9 8 6 11 11 C 1.46897 * 111.00297 * 124.30133 * 10 9 8 12 12 C 1.53237 * 109.34231 * 172.75099 * 11 10 9 13 13 H 1.08998 * 109.79096 * 294.02590 * 12 11 10 14 14 C 1.52997 * 109.63093 * 173.54130 * 12 11 10 15 15 N 1.47080 * 108.52367 * 53.82923 * 12 11 10 16 16 C 1.36938 * 120.88089 * 128.83589 * 15 12 11 17 17 H 1.07995 * 120.00373 * 331.97072 * 16 15 12 18 18 C 1.38811 * 119.99547 * 151.97460 * 16 15 12 19 19 N 1.31612 * 120.00373 * 342.69762 * 18 16 15 20 20 Si 1.86802 * 119.99706 * 162.70207 * 18 16 15 21 21 H 1.48508 * 109.47089 * 89.99835 * 20 18 16 22 22 H 1.48507 * 109.47008 * 209.99525 * 20 18 16 23 23 H 1.48499 * 109.47413 * 329.99908 * 20 18 16 24 24 C 1.47079 * 118.23402 * 308.82180 * 15 12 11 25 25 H 1.09005 * 109.78766 * 170.98751 * 24 15 12 26 26 C 1.53006 * 109.62824 * 291.46770 * 24 15 12 27 27 C 1.46901 * 110.99929 * 0.02562 * 10 9 8 28 28 N 1.36511 * 118.71071 * 0.02562 * 9 8 6 29 29 N 1.31072 * 125.18429 * 179.97438 * 2 1 3 30 30 H 1.09010 * 109.46949 * 90.02360 * 1 2 3 31 31 H 1.08990 * 109.47784 * 210.02634 * 1 2 3 32 32 H 1.08998 * 109.47017 * 330.03219 * 1 2 3 33 33 H 1.09001 * 109.47207 * 90.00188 * 7 6 5 34 34 H 1.09002 * 109.46816 * 210.00019 * 7 6 5 35 35 H 1.08994 * 109.47288 * 329.99498 * 7 6 5 36 36 H 1.08005 * 120.49160 * 179.97438 * 8 6 5 37 37 H 1.09006 * 109.49357 * 292.71007 * 11 10 9 38 38 H 1.08996 * 109.48979 * 52.78786 * 11 10 9 39 39 H 1.09008 * 109.47220 * 296.78336 * 14 12 11 40 40 H 1.09004 * 109.47306 * 56.78330 * 14 12 11 41 41 H 1.09004 * 109.47317 * 176.78786 * 14 12 11 42 42 H 0.97004 * 120.00264 * 175.14561 * 19 18 16 43 43 H 1.08991 * 109.47515 * 179.03439 * 26 24 15 44 44 H 1.09001 * 109.47280 * 299.03567 * 26 24 15 45 45 H 1.09003 * 109.46952 * 59.03036 * 26 24 15 46 46 H 1.09003 * 109.49325 * 307.21785 * 27 10 9 47 47 H 1.09007 * 109.49048 * 67.26326 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2719 1.0846 0.0000 4 6 3.5525 0.7308 0.0006 5 7 4.6854 1.4424 0.0003 6 6 5.8622 0.8522 0.0005 7 6 7.1177 1.6857 -0.0003 8 6 5.9543 -0.5373 0.0004 9 6 4.7932 -1.2860 0.0007 10 7 4.8451 -2.6621 0.0011 11 6 4.0927 -3.2170 1.1341 12 6 4.0222 -4.7417 0.9985 13 1 3.4300 -5.0074 0.1229 14 6 3.3819 -5.3402 2.2526 15 7 5.3898 -5.2610 0.8461 16 6 5.8473 -6.2794 1.6391 17 1 5.4424 -6.4152 2.6310 18 6 6.8316 -7.1373 1.1678 19 7 7.0850 -7.2029 -0.1220 20 14 7.7964 -8.1988 2.3644 21 1 7.1002 -9.4979 2.5462 22 1 9.1592 -8.4388 1.8253 23 1 7.8969 -7.5037 3.6728 24 6 6.2527 -4.6577 -0.1807 25 1 7.2719 -5.0281 -0.0704 26 6 5.7238 -5.0150 -1.5713 27 6 6.2355 -3.1364 0.0019 28 7 3.5932 -0.6351 0.0005 29 7 2.2622 -1.0713 0.0005 30 1 -0.3633 -0.0004 -1.0278 31 1 -0.3634 -0.8896 0.5142 32 1 -0.3633 0.8903 0.5133 33 1 7.4206 1.8873 1.0272 34 1 7.9125 1.1447 -0.5139 35 1 6.9281 2.6276 -0.5148 36 1 6.9192 -1.0226 0.0002 37 1 4.5948 -2.9576 2.0662 38 1 3.0836 -2.8050 1.1373 39 1 4.0115 -5.1306 3.1174 40 1 2.3973 -4.8979 2.4043 41 1 3.2809 -6.4186 2.1297 42 1 7.8190 -7.7487 -0.4450 43 1 6.3551 -4.5526 -2.3300 44 1 5.7372 -6.0975 -1.6981 45 1 4.7023 -4.6495 -1.6764 46 1 6.7807 -2.6658 -0.8163 47 1 6.7075 -2.8776 0.9498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882518708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:40:01 Heat of formation + Delta-G solvation = 177.459559 kcal Electronic energy + Delta-G solvation = -29746.802887 eV Core-core repulsion = 25968.511842 eV Total energy + Delta-G solvation = -3778.291045 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.81337 -39.91829 -38.39720 -35.89546 -33.76302 -32.92808 -32.39107 -31.35743 -30.10218 -30.01780 -27.99186 -27.79323 -26.23183 -25.44831 -23.70150 -23.16121 -21.82469 -21.08478 -20.58117 -19.00895 -18.12964 -17.83553 -16.86458 -16.57585 -15.97430 -15.22092 -14.95591 -14.65142 -14.39421 -14.09768 -13.97615 -13.70234 -13.56530 -13.37037 -13.21990 -13.06460 -12.74099 -12.52613 -12.37136 -12.09350 -11.89721 -11.80425 -11.70961 -11.45250 -11.15083 -11.13080 -10.84754 -10.75417 -10.64422 -10.30529 -10.20730 -10.01777 -9.89835 -9.79128 -9.53234 -9.44935 -9.21708 -8.60598 -8.03525 -6.86987 -5.91075 -3.38010 0.56946 0.83855 1.85668 2.57233 3.26353 3.28659 3.37174 3.37789 3.41067 3.56808 4.10549 4.36170 4.53266 4.55911 4.97104 5.02966 5.10222 5.17075 5.32207 5.34484 5.35466 5.41775 5.43646 5.51193 5.53729 5.64595 5.68503 5.74525 5.83934 5.92271 5.96234 6.06472 6.12007 6.16293 6.31194 6.36748 6.42182 6.57408 6.71594 6.76027 6.82001 6.94178 6.96406 7.03290 7.40685 7.60876 7.63568 7.76502 8.07410 8.26135 9.05373 9.66137 10.23527 11.14661 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.003915 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.901775 B = 7149.706699 C = 8212.171319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.264 3.736 3 N -0.540 5.540 4 C 0.473 3.527 5 N -0.502 5.502 6 C 0.253 3.747 7 C -0.105 4.105 8 C -0.305 4.305 9 C 0.417 3.583 10 N -0.463 5.463 11 C 0.046 3.954 12 C 0.172 3.828 13 H 0.040 0.960 14 C -0.136 4.136 15 N -0.584 5.584 16 C -0.255 4.255 17 H 0.073 0.927 18 C 0.007 3.993 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.199 3.801 25 H 0.105 0.895 26 C -0.142 4.142 27 C 0.034 3.966 28 N -0.339 5.339 29 N -0.331 5.331 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.173 0.827 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.042 0.958 41 H 0.067 0.933 42 H 0.254 0.746 43 H 0.024 0.976 44 H 0.082 0.918 45 H 0.030 0.970 46 H 0.081 0.919 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.766 12.926 0.289 13.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.017 4.017 3 N -0.275 5.275 4 C 0.113 3.887 5 N -0.223 5.223 6 C 0.093 3.907 7 C -0.163 4.163 8 C -0.336 4.336 9 C 0.196 3.804 10 N -0.174 5.174 11 C -0.079 4.079 12 C 0.065 3.935 13 H 0.057 0.943 14 C -0.194 4.194 15 N -0.307 5.307 16 C -0.384 4.384 17 H 0.090 0.910 18 C -0.192 4.192 19 N -0.539 5.539 20 Si 0.727 3.273 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.092 3.908 25 H 0.123 0.877 26 C -0.201 4.201 27 C -0.093 4.093 28 N -0.122 5.122 29 N -0.163 5.163 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.190 0.810 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.043 0.957 44 H 0.101 0.899 45 H 0.050 0.950 46 H 0.099 0.901 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.734 12.968 -0.191 13.497 hybrid contribution 1.176 -1.189 0.845 1.874 sum -2.558 11.779 0.654 12.071 Atomic orbital electron populations 1.20177 0.83124 1.04370 1.04135 1.24526 0.98481 0.85298 0.93379 1.70783 0.96549 1.28245 1.31970 1.22731 0.93582 0.77577 0.94856 1.67776 0.94873 1.35359 1.24280 1.21614 0.92929 0.91185 0.84940 1.20830 0.91415 0.99829 1.04190 1.21884 0.97690 0.94147 1.19892 1.19656 0.82159 0.90085 0.88504 1.57806 1.17854 1.00544 1.41166 1.23116 0.97724 0.99473 0.87600 1.20483 0.88437 0.87926 0.96644 0.94269 1.21775 0.98278 1.01728 0.97643 1.44320 1.06846 1.39112 1.40375 1.19180 1.19788 1.04570 0.94817 0.90960 1.25011 1.01996 0.96871 0.95309 1.70033 1.30508 1.42218 1.11153 0.86393 0.79602 0.80571 0.80698 1.21399 1.21562 1.20600 1.20452 0.97640 0.84013 0.88721 0.87735 1.22048 0.98243 1.03717 0.96119 1.23447 0.83054 1.01755 1.01078 1.48725 1.05552 1.08980 1.48916 1.78444 0.83506 1.20679 1.33625 0.89360 0.89489 0.89217 0.89032 0.89376 0.89495 0.81023 0.93358 0.89111 0.92544 0.93924 0.91436 0.93607 0.95660 0.89887 0.95046 0.90103 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.51 36.00 0.38 -0.23 16 2 C 0.26 4.18 8.09 -157.01 -1.27 2.91 16 3 N -0.54 -9.62 11.26 -11.80 -0.13 -9.75 16 4 C 0.47 8.49 9.00 -323.16 -2.91 5.59 16 5 N -0.50 -8.06 10.38 -10.18 -0.11 -8.16 16 6 C 0.25 3.21 6.81 -82.29 -0.56 2.65 16 7 C -0.11 -0.82 10.18 36.00 0.37 -0.46 16 8 C -0.31 -4.05 8.52 -39.23 -0.33 -4.39 16 9 C 0.42 6.86 6.50 -152.99 -0.99 5.86 16 10 N -0.46 -8.03 4.17 -172.42 -0.72 -8.75 16 11 C 0.05 0.83 4.77 -3.70 -0.02 0.81 16 12 C 0.17 3.41 3.25 -67.49 -0.22 3.19 16 13 H 0.04 0.85 7.61 -51.93 -0.40 0.46 16 14 C -0.14 -2.43 7.95 37.16 0.30 -2.13 16 15 N -0.58 -13.00 2.72 -157.01 -0.43 -13.43 16 16 C -0.25 -6.23 8.72 -15.06 -0.13 -6.37 16 17 H 0.07 1.75 6.17 -52.49 -0.32 1.43 16 18 C 0.01 0.18 4.92 -17.43 -0.09 0.09 16 19 N -0.90 -23.29 9.81 55.49 0.54 -22.75 16 20 Si 0.90 20.11 29.59 -169.99 -5.03 15.08 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 C 0.20 4.13 2.34 -67.49 -0.16 3.97 16 25 H 0.10 2.43 6.25 -51.93 -0.32 2.10 16 26 C -0.14 -2.99 8.98 37.16 0.33 -2.65 16 27 C 0.03 0.56 3.69 -3.70 -0.01 0.55 16 28 N -0.34 -6.03 3.74 -12.98 -0.05 -6.08 16 29 N -0.33 -5.84 10.84 32.39 0.35 -5.49 16 30 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.50 8.08 -51.93 -0.42 0.08 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.17 1.85 5.86 -52.48 -0.31 1.54 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.65 5.96 -51.93 -0.31 1.34 16 39 H 0.06 1.01 7.33 -51.92 -0.38 0.63 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 1.27 7.78 -51.93 -0.40 0.87 16 42 H 0.25 6.50 8.32 -40.82 -0.34 6.16 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 2.00 6.78 -51.93 -0.35 1.65 16 45 H 0.03 0.66 7.06 -51.93 -0.37 0.29 16 46 H 0.08 1.17 6.89 -51.93 -0.36 0.81 16 47 H 0.06 0.92 7.82 -51.92 -0.41 0.51 16 LS Contribution 365.11 15.07 5.50 5.50 Total: -1.00 -30.25 365.11 -12.25 -42.50 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.86 Total: 1.93 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: -5.32 Total: 9.40 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -0.54 Total: -74.41 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.08 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.25 -12.25 -42.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.957 kcal (2) G-P(sol) polarization free energy of solvation -30.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds