Wall clock time and date at job start Sat Apr 11 2020 02:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32725 * 125.19355 * 2 1 4 4 C 1.32858 * 109.74624 * 179.97438 * 3 2 1 5 5 N 1.33790 * 132.41730 * 179.97438 * 4 3 2 6 6 C 1.31650 * 121.22734 * 180.02562 * 5 4 3 7 7 C 1.50696 * 119.78432 * 179.97438 * 6 5 4 8 8 C 1.39257 * 120.42903 * 0.02562 * 6 5 4 9 9 C 1.38156 * 119.02069 * 359.97438 * 8 6 5 10 10 N 1.37706 * 120.64997 * 180.02562 * 9 8 6 11 11 C 1.46897 * 111.00297 * 124.30133 * 10 9 8 12 12 C 1.53237 * 109.34231 * 172.75099 * 11 10 9 13 13 H 1.08998 * 109.79096 * 294.02590 * 12 11 10 14 14 C 1.52997 * 109.63093 * 173.54130 * 12 11 10 15 15 N 1.47080 * 108.52367 * 53.82923 * 12 11 10 16 16 C 1.36938 * 120.88089 * 128.83589 * 15 12 11 17 17 H 1.07995 * 120.00373 * 331.97072 * 16 15 12 18 18 C 1.38811 * 119.99547 * 151.97460 * 16 15 12 19 19 N 1.31612 * 120.00373 * 342.69762 * 18 16 15 20 20 Si 1.86802 * 119.99706 * 162.70207 * 18 16 15 21 21 H 1.48508 * 109.47089 * 89.99835 * 20 18 16 22 22 H 1.48507 * 109.47008 * 209.99525 * 20 18 16 23 23 H 1.48499 * 109.47413 * 329.99908 * 20 18 16 24 24 C 1.47079 * 118.23402 * 308.82180 * 15 12 11 25 25 H 1.09005 * 109.78766 * 170.98751 * 24 15 12 26 26 C 1.53006 * 109.62824 * 291.46770 * 24 15 12 27 27 C 1.46901 * 110.99929 * 0.02562 * 10 9 8 28 28 N 1.36511 * 118.71071 * 0.02562 * 9 8 6 29 29 N 1.31072 * 125.18429 * 179.97438 * 2 1 3 30 30 H 1.09010 * 109.46949 * 90.02360 * 1 2 3 31 31 H 1.08990 * 109.47784 * 210.02634 * 1 2 3 32 32 H 1.08998 * 109.47017 * 330.03219 * 1 2 3 33 33 H 1.09001 * 109.47207 * 90.00188 * 7 6 5 34 34 H 1.09002 * 109.46816 * 210.00019 * 7 6 5 35 35 H 1.08994 * 109.47288 * 329.99498 * 7 6 5 36 36 H 1.08005 * 120.49160 * 179.97438 * 8 6 5 37 37 H 1.09006 * 109.49357 * 292.71007 * 11 10 9 38 38 H 1.08996 * 109.48979 * 52.78786 * 11 10 9 39 39 H 1.09008 * 109.47220 * 296.78336 * 14 12 11 40 40 H 1.09004 * 109.47306 * 56.78330 * 14 12 11 41 41 H 1.09004 * 109.47317 * 176.78786 * 14 12 11 42 42 H 0.97004 * 120.00264 * 175.14561 * 19 18 16 43 43 H 1.08991 * 109.47515 * 179.03439 * 26 24 15 44 44 H 1.09001 * 109.47280 * 299.03567 * 26 24 15 45 45 H 1.09003 * 109.46952 * 59.03036 * 26 24 15 46 46 H 1.09003 * 109.49325 * 307.21785 * 27 10 9 47 47 H 1.09007 * 109.49048 * 67.26326 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2719 1.0846 0.0000 4 6 3.5525 0.7308 0.0006 5 7 4.6854 1.4424 0.0003 6 6 5.8622 0.8522 0.0005 7 6 7.1177 1.6857 -0.0003 8 6 5.9543 -0.5373 0.0004 9 6 4.7932 -1.2860 0.0007 10 7 4.8451 -2.6621 0.0011 11 6 4.0927 -3.2170 1.1341 12 6 4.0222 -4.7417 0.9985 13 1 3.4300 -5.0074 0.1229 14 6 3.3819 -5.3402 2.2526 15 7 5.3898 -5.2610 0.8461 16 6 5.8473 -6.2794 1.6391 17 1 5.4424 -6.4152 2.6310 18 6 6.8316 -7.1373 1.1678 19 7 7.0850 -7.2029 -0.1220 20 14 7.7964 -8.1988 2.3644 21 1 7.1002 -9.4979 2.5462 22 1 9.1592 -8.4388 1.8253 23 1 7.8969 -7.5037 3.6728 24 6 6.2527 -4.6577 -0.1807 25 1 7.2719 -5.0281 -0.0704 26 6 5.7238 -5.0150 -1.5713 27 6 6.2355 -3.1364 0.0019 28 7 3.5932 -0.6351 0.0005 29 7 2.2622 -1.0713 0.0005 30 1 -0.3633 -0.0004 -1.0278 31 1 -0.3634 -0.8896 0.5142 32 1 -0.3633 0.8903 0.5133 33 1 7.4206 1.8873 1.0272 34 1 7.9125 1.1447 -0.5139 35 1 6.9281 2.6276 -0.5148 36 1 6.9192 -1.0226 0.0002 37 1 4.5948 -2.9576 2.0662 38 1 3.0836 -2.8050 1.1373 39 1 4.0115 -5.1306 3.1174 40 1 2.3973 -4.8979 2.4043 41 1 3.2809 -6.4186 2.1297 42 1 7.8190 -7.7487 -0.4450 43 1 6.3551 -4.5526 -2.3300 44 1 5.7372 -6.0975 -1.6981 45 1 4.7023 -4.6495 -1.6764 46 1 6.7807 -2.6658 -0.8163 47 1 6.7075 -2.8776 0.9498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882518708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:40:00 Heat of formation + Delta-G solvation = 162.578721 kcal Electronic energy + Delta-G solvation = -29747.448168 eV Core-core repulsion = 25968.511842 eV Total energy + Delta-G solvation = -3778.936327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.00790 -41.23860 -39.63993 -37.35437 -35.00162 -34.54510 -33.59309 -32.94742 -31.37615 -30.91501 -29.66123 -28.86149 -27.54529 -26.94119 -25.37103 -24.37301 -23.05796 -22.50942 -21.82471 -20.64121 -19.36133 -19.00735 -18.34290 -17.81147 -17.45031 -16.90323 -16.27423 -15.94973 -15.74934 -15.60012 -15.26438 -14.98825 -14.85618 -14.59929 -14.20520 -14.09467 -13.94107 -13.62257 -13.44660 -13.30171 -13.22118 -13.10890 -13.00666 -12.81846 -12.74273 -12.51964 -12.44604 -12.39022 -12.28420 -11.99953 -11.86863 -11.48424 -11.26327 -11.22573 -11.03824 -10.69805 -10.48445 -10.40482 -9.28704 -8.67430 -7.80035 -5.28222 -0.57772 -0.31019 0.68710 1.41825 1.49184 1.53870 1.60252 2.08410 2.28351 2.38880 2.54436 3.01768 3.32432 3.41677 3.47616 3.53183 3.88088 3.97437 4.01039 4.11744 4.17692 4.27540 4.38159 4.53080 4.56468 4.60439 4.61929 4.66088 4.68544 4.78326 4.81226 4.82615 4.85553 4.93876 4.95861 5.04581 5.14297 5.20960 5.27610 5.31772 5.38573 5.40052 5.54024 5.64339 5.70535 5.80798 5.95816 6.41865 6.48044 6.88364 7.19935 7.84873 8.39874 9.23264 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.003915 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.901775 B = 7149.706699 C = 8212.171319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.261 3.739 3 N -0.566 5.566 4 C 0.454 3.546 5 N -0.519 5.519 6 C 0.258 3.742 7 C -0.103 4.103 8 C -0.285 4.285 9 C 0.390 3.610 10 N -0.475 5.475 11 C 0.063 3.937 12 C 0.171 3.829 13 H 0.015 0.985 14 C -0.128 4.128 15 N -0.596 5.596 16 C -0.256 4.256 17 H 0.073 0.927 18 C -0.037 4.037 19 N -0.918 5.918 20 Si 0.953 3.047 21 H -0.294 1.294 22 H -0.294 1.294 23 H -0.274 1.274 24 C 0.197 3.803 25 H 0.081 0.919 26 C -0.127 4.127 27 C 0.046 3.954 28 N -0.348 5.348 29 N -0.361 5.361 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.203 0.797 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.248 0.752 43 H 0.044 0.956 44 H 0.046 0.954 45 H 0.022 0.978 46 H 0.110 0.890 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.808 14.811 0.861 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.019 4.019 3 N -0.302 5.302 4 C 0.094 3.906 5 N -0.242 5.242 6 C 0.099 3.901 7 C -0.160 4.160 8 C -0.315 4.315 9 C 0.170 3.830 10 N -0.187 5.187 11 C -0.063 4.063 12 C 0.064 3.936 13 H 0.033 0.967 14 C -0.186 4.186 15 N -0.319 5.319 16 C -0.386 4.386 17 H 0.090 0.910 18 C -0.234 4.234 19 N -0.563 5.563 20 Si 0.783 3.217 21 H -0.222 1.222 22 H -0.220 1.220 23 H -0.199 1.199 24 C 0.090 3.910 25 H 0.098 0.902 26 C -0.186 4.186 27 C -0.081 4.081 28 N -0.130 5.130 29 N -0.193 5.193 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.041 0.959 46 H 0.128 0.872 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.773 14.876 0.387 15.137 hybrid contribution 0.874 -1.687 0.644 2.006 sum -1.898 13.189 1.031 13.365 Atomic orbital electron populations 1.20419 0.79829 1.05740 1.05558 1.25432 1.00256 0.84371 0.91843 1.70782 0.97033 1.29266 1.33129 1.23097 0.94280 0.77947 0.95285 1.67915 0.95369 1.35733 1.25157 1.22465 0.93462 0.91626 0.82553 1.21069 0.89476 0.99572 1.05867 1.22363 0.97742 0.94406 1.16944 1.19922 0.82756 0.89726 0.90573 1.57719 1.17883 1.01572 1.41522 1.22789 0.97847 0.97572 0.88044 1.20522 0.87099 0.89497 0.96469 0.96683 1.21682 0.99520 1.00736 0.96613 1.44529 1.08048 1.38946 1.40398 1.19424 1.19329 1.04751 0.95065 0.90956 1.25582 1.03192 0.98189 0.96390 1.70178 1.30749 1.43150 1.12250 0.85521 0.78021 0.78858 0.79316 1.22179 1.22046 1.19910 1.20364 0.95956 0.86721 0.87936 0.90155 1.21850 0.98167 1.01259 0.97313 1.23237 0.83377 0.98699 1.02759 1.48780 1.05863 1.09090 1.49280 1.78368 0.83906 1.21904 1.35171 0.87734 0.88193 0.87682 0.87007 0.86411 0.89054 0.78053 0.93508 0.89408 0.92615 0.91359 0.92995 0.94291 0.93719 0.93523 0.95869 0.87205 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.09 10.51 71.23 0.75 -0.34 16 2 C 0.26 8.16 8.09 138.68 1.12 9.28 16 3 N -0.57 -19.98 11.26 -191.26 -2.15 -22.13 16 4 C 0.45 16.01 9.00 261.61 2.35 18.36 16 5 N -0.52 -15.83 10.38 -186.13 -1.93 -17.77 16 6 C 0.26 5.75 6.81 42.83 0.29 6.04 16 7 C -0.10 -1.16 10.18 71.23 0.73 -0.43 16 8 C -0.28 -6.65 8.52 22.50 0.19 -6.46 16 9 C 0.39 12.18 6.50 131.99 0.86 13.03 16 10 N -0.47 -15.93 4.17 -699.43 -2.92 -18.85 16 11 C 0.06 2.24 4.77 86.38 0.41 2.65 16 12 C 0.17 6.81 3.25 44.96 0.15 6.95 16 13 H 0.02 0.69 7.61 -2.39 -0.02 0.67 16 14 C -0.13 -4.53 7.95 71.98 0.57 -3.96 16 15 N -0.60 -26.71 2.72 -650.66 -1.77 -28.49 16 16 C -0.26 -12.61 8.72 84.03 0.73 -11.87 16 17 H 0.07 3.50 6.17 -2.91 -0.02 3.48 16 18 C -0.04 -1.88 4.92 84.86 0.42 -1.46 16 19 N -0.92 -48.72 9.81 21.65 0.21 -48.51 16 20 Si 0.95 41.66 29.59 68.60 2.03 43.69 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 C 0.20 8.13 2.34 44.96 0.11 8.24 16 25 H 0.08 3.74 6.25 -2.38 -0.01 3.72 16 26 C -0.13 -5.38 8.98 71.98 0.65 -4.73 16 27 C 0.05 1.44 3.69 86.38 0.32 1.76 16 28 N -0.35 -12.14 3.74 -194.99 -0.73 -12.87 16 29 N -0.36 -12.70 10.84 -51.44 -0.56 -13.26 16 30 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.12 0.69 8.08 -2.39 -0.02 0.67 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 36 H 0.20 3.37 5.86 -2.91 -0.02 3.35 16 37 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.09 3.17 5.96 -2.39 -0.01 3.16 16 39 H 0.05 1.97 7.33 -2.38 -0.02 1.95 16 40 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.05 1.97 7.78 -2.39 -0.02 1.95 16 42 H 0.25 12.96 8.32 -92.71 -0.77 12.19 16 43 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.05 2.31 6.78 -2.39 -0.02 2.29 16 45 H 0.02 0.98 7.06 -2.39 -0.02 0.96 16 46 H 0.11 2.80 6.89 -2.39 -0.02 2.79 16 47 H 0.07 1.98 7.82 -2.38 -0.02 1.96 16 Total: -1.00 -68.12 365.11 2.81 -65.31 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.99 Total: 15.79 kcal Atomic # 6 Polarization: 27.44 SS G_CDS: 9.64 Total: 37.08 kcal Atomic # 7 Polarization: -152.02 SS G_CDS: -9.85 Total: -161.87 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -68.12 2.81 -65.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.889 kcal (2) G-P(sol) polarization free energy of solvation -68.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds