Wall clock time and date at job start Sat Apr 11 2020 02:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38239 * 119.99769 * 2 1 4 4 C 1.38234 * 120.00264 * 179.97438 * 3 2 1 5 5 C 1.38236 * 119.99837 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99656 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47244 * 89.99757 * 6 5 4 8 8 C 1.50701 * 109.47244 * 180.02562 * 7 6 5 9 9 O 1.21289 * 119.99689 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00468 * 180.02562 * 8 7 6 11 11 C 1.46928 * 120.63059 * 354.20618 * 10 8 7 12 12 C 1.53189 * 108.77687 * 126.41394 * 11 10 8 13 13 C 1.53039 * 109.31236 * 54.63431 * 12 11 10 14 14 H 1.09001 * 109.45915 * 178.62683 * 13 12 11 15 15 N 1.46507 * 109.45702 * 58.65954 * 13 12 11 16 16 C 1.36938 * 120.00200 * 84.96971 * 15 13 12 17 17 H 1.07998 * 119.99481 * 0.02562 * 16 15 13 18 18 C 1.38802 * 119.99763 * 179.97438 * 16 15 13 19 19 N 1.31622 * 120.00458 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99894 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47144 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47446 * 240.00088 * 20 18 16 23 23 H 1.48499 * 109.47157 * 120.00258 * 20 18 16 24 24 C 1.53037 * 109.53014 * 298.64566 * 13 12 11 25 25 C 1.46931 * 120.63361 * 174.23325 * 10 8 7 26 26 H 1.08997 * 109.58905 * 113.79798 * 25 10 8 27 27 C 1.53000 * 109.58356 * 353.36923 * 25 10 8 28 28 C 1.38229 * 120.00123 * 0.24611 * 5 4 3 29 29 C 1.38233 * 120.00508 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.46908 * 90.00609 * 1 2 3 31 31 H 1.08999 * 109.47007 * 209.99800 * 1 2 3 32 32 H 1.08991 * 109.47542 * 330.00377 * 1 2 3 33 33 H 1.08006 * 120.00071 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.00036 * 179.97438 * 4 3 2 35 35 H 1.09000 * 109.47019 * 329.99135 * 6 5 4 36 36 H 1.09004 * 109.46611 * 209.99765 * 6 5 4 37 37 H 1.09000 * 109.47620 * 59.99746 * 7 6 5 38 38 H 1.09004 * 109.47323 * 299.99572 * 7 6 5 39 39 H 1.09010 * 109.58266 * 6.62999 * 11 10 8 40 40 H 1.08997 * 109.58883 * 246.20268 * 11 10 8 41 41 H 1.09006 * 109.49795 * 294.68432 * 12 11 10 42 42 H 1.08995 * 109.52693 * 174.60686 * 12 11 10 43 43 H 0.97004 * 119.99402 * 264.96884 * 15 13 12 44 44 H 0.96997 * 119.99985 * 0.02562 * 19 18 16 45 45 H 1.08997 * 109.49713 * 181.31013 * 24 13 12 46 46 H 1.09001 * 109.49169 * 301.40345 * 24 13 12 47 47 H 1.09000 * 109.46787 * 65.80076 * 27 25 10 48 48 H 1.08999 * 109.46783 * 185.79766 * 27 25 10 49 49 H 1.08993 * 109.47257 * 305.79949 * 27 25 10 50 50 H 1.07994 * 120.00454 * 179.72947 * 28 5 4 51 51 H 1.07998 * 119.99767 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0002 0.0005 6 6 5.7787 0.0004 0.0005 7 6 6.2887 0.0005 1.4430 8 6 7.7957 0.0013 1.4430 9 8 8.4021 0.0013 0.3925 10 7 8.4697 0.0010 2.6101 11 6 7.7547 0.1276 3.8874 12 6 8.1618 -1.0354 4.7977 13 6 9.6861 -1.0643 4.9307 14 1 9.9770 -1.8761 5.5975 15 7 10.1522 0.2107 5.4817 16 6 10.1681 0.4059 6.8370 17 1 9.8375 -0.3801 7.4997 18 6 10.6102 1.6137 7.3590 19 7 11.0136 2.5715 6.5513 20 14 10.6326 1.8799 9.2078 21 1 10.1340 0.6587 9.8898 22 1 9.7605 3.0312 9.5529 23 1 12.0219 2.1613 9.6506 24 6 10.3158 -1.2852 3.5535 25 6 9.9334 -0.1252 2.6293 26 1 10.3751 0.7993 3.0012 27 6 10.4425 -0.4074 1.2144 28 6 3.5807 -1.1969 -0.0051 29 6 2.1982 -1.1971 -0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5137 33 1 1.6581 2.1326 -0.0004 34 1 4.1204 2.1327 0.0001 35 1 6.1419 0.8903 -0.5134 36 1 6.1421 -0.8896 -0.5133 37 1 5.9255 -0.8894 1.9569 38 1 5.9254 0.8905 1.9568 39 1 6.6798 0.0933 3.7094 40 1 8.0187 1.0727 4.3619 41 1 7.8165 -1.9743 4.3648 42 1 7.7131 -0.9019 5.7820 43 1 10.4495 0.9165 4.8864 44 1 11.0017 2.4335 5.5913 45 1 11.4004 -1.3290 3.6522 46 1 9.9502 -2.2218 3.1324 47 1 10.2493 0.4574 0.5796 48 1 11.5144 -0.6026 1.2461 49 1 9.9265 -1.2779 0.8095 50 1 4.1206 -2.1322 -0.0096 51 1 1.6583 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044672621.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:40:36 Heat of formation + Delta-G solvation = -4.311313 kcal Electronic energy + Delta-G solvation = -28485.142772 eV Core-core repulsion = 24770.217142 eV Total energy + Delta-G solvation = -3714.925630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.43688 -39.59547 -37.60535 -34.87235 -34.39075 -32.84276 -32.05830 -31.11938 -31.03168 -28.86342 -27.42268 -26.78214 -24.33740 -23.65799 -23.41249 -22.91853 -21.71702 -20.71876 -19.86691 -18.39408 -17.27893 -16.86391 -16.11536 -15.95296 -15.76401 -15.33875 -15.20386 -14.78650 -14.16788 -14.14718 -13.90822 -13.80354 -13.64705 -13.60294 -13.35412 -13.05257 -12.82827 -12.71148 -12.47278 -12.39505 -12.03807 -11.96741 -11.71488 -11.53443 -11.34172 -11.26633 -11.17378 -10.95112 -10.83623 -10.69545 -10.54969 -10.32962 -10.18584 -10.04988 -9.20170 -9.11961 -8.97740 -8.89907 -8.61694 -8.20679 -7.07370 -6.13132 -3.13786 1.11533 1.20828 2.81651 3.20209 3.49300 3.55414 3.55661 3.64667 4.46452 4.57985 4.63850 4.66416 4.81697 4.91319 4.94252 4.98705 5.13839 5.19319 5.23180 5.27483 5.30213 5.34698 5.41743 5.46477 5.48825 5.53862 5.60394 5.63853 5.67592 5.71218 5.80052 5.86919 5.92362 5.93603 6.04000 6.06658 6.09800 6.21005 6.22594 6.36099 6.38100 6.41943 6.48291 6.53737 6.65409 6.68029 6.74236 6.82198 7.00535 7.72113 7.78957 8.41227 8.71978 9.18587 10.05022 10.20332 11.34811 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014050 B = 0.002596 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.404616 B =10781.408747 C =11924.432897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.119 4.119 4 C -0.112 4.112 5 C -0.084 4.084 6 C -0.063 4.063 7 C -0.135 4.135 8 C 0.512 3.488 9 O -0.545 6.545 10 N -0.600 5.600 11 C 0.114 3.886 12 C -0.148 4.148 13 C 0.179 3.821 14 H 0.051 0.949 15 N -0.733 5.733 16 C -0.330 4.330 17 H 0.065 0.935 18 C -0.045 4.045 19 N -0.944 5.944 20 Si 1.084 2.916 21 H -0.295 1.295 22 H -0.294 1.294 23 H -0.294 1.294 24 C -0.134 4.134 25 C 0.146 3.854 26 H 0.073 0.927 27 C -0.134 4.134 28 C -0.113 4.113 29 C -0.120 4.120 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.073 0.927 43 H 0.366 0.634 44 H 0.255 0.745 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.040 0.960 49 H 0.060 0.940 50 H 0.121 0.879 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.240 -7.386 -13.661 23.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.130 4.130 5 C -0.084 4.084 6 C -0.101 4.101 7 C -0.175 4.175 8 C 0.301 3.699 9 O -0.425 6.425 10 N -0.333 5.333 11 C -0.008 4.008 12 C -0.190 4.190 13 C 0.069 3.931 14 H 0.069 0.931 15 N -0.377 5.377 16 C -0.461 4.461 17 H 0.083 0.917 18 C -0.242 4.242 19 N -0.590 5.590 20 Si 0.915 3.085 21 H -0.222 1.222 22 H -0.221 1.221 23 H -0.221 1.221 24 C -0.173 4.173 25 C 0.043 3.957 26 H 0.091 0.909 27 C -0.191 4.191 28 C -0.131 4.131 29 C -0.138 4.138 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.201 0.799 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.059 0.941 49 H 0.079 0.921 50 H 0.139 0.861 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.600 -6.464 -12.815 21.944 hybrid contribution -0.375 -0.923 -1.057 1.452 sum -16.974 -7.387 -13.871 23.133 Atomic orbital electron populations 1.20782 0.91363 1.02728 1.02178 1.19918 0.96004 0.93297 1.00257 1.21029 0.94189 0.97491 1.00982 1.21090 0.94117 0.97772 1.00019 1.19940 0.95696 0.93183 0.99612 1.20324 0.89765 1.04340 0.95636 1.21705 0.92774 1.04405 0.98601 1.20568 0.89783 0.76132 0.83455 1.90713 1.69198 1.50771 1.31770 1.48216 1.07363 1.71477 1.06218 1.21717 0.95203 1.00861 0.83043 1.22488 1.00703 0.96424 0.99338 1.20125 0.90809 0.90253 0.91943 0.93081 1.42526 1.78143 1.12453 1.04577 1.20090 1.41329 1.01451 0.83225 0.91707 1.25728 0.99288 0.92428 1.06802 1.70829 1.50195 1.34117 1.03812 0.83166 0.76338 0.74874 0.74104 1.22168 1.22079 1.22080 1.22256 1.01295 0.97544 0.96247 1.21203 0.78984 0.98857 0.96648 0.90907 1.22180 0.98467 1.03710 0.94748 1.21066 0.94095 0.97694 1.00202 1.21015 0.94175 0.97458 1.01108 0.91329 0.91627 0.91599 0.86184 0.85971 0.90244 0.90312 0.89059 0.89045 0.90956 0.90136 0.93223 0.90795 0.79922 0.93410 0.90880 0.92001 0.90573 0.94081 0.92143 0.86059 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.01 36.00 0.36 -0.36 16 2 C -0.09 -0.84 5.88 -104.63 -0.62 -1.45 16 3 C -0.12 -1.09 9.70 -39.58 -0.38 -1.47 16 4 C -0.11 -1.11 9.70 -39.58 -0.38 -1.49 16 5 C -0.08 -0.86 5.13 -104.63 -0.54 -1.40 16 6 C -0.06 -0.68 4.63 -27.88 -0.13 -0.81 16 7 C -0.13 -1.55 4.04 -27.88 -0.11 -1.66 16 8 C 0.51 7.64 7.50 -10.99 -0.08 7.55 16 9 O -0.55 -9.27 11.55 5.55 0.06 -9.20 16 10 N -0.60 -9.43 2.97 -165.23 -0.49 -9.92 16 11 C 0.11 1.79 6.09 -3.71 -0.02 1.76 16 12 C -0.15 -2.44 5.78 -26.61 -0.15 -2.60 16 13 C 0.18 3.39 3.10 -67.89 -0.21 3.18 16 14 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 15 N -0.73 -17.22 4.31 -53.39 -0.23 -17.45 16 16 C -0.33 -8.84 9.93 -15.06 -0.15 -8.98 16 17 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 18 C -0.04 -1.26 5.50 -17.43 -0.10 -1.36 16 19 N -0.94 -28.52 13.70 55.49 0.76 -27.76 16 20 Si 1.08 25.49 29.92 -169.99 -5.09 20.41 16 21 H -0.30 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 C -0.13 -2.23 5.07 -26.63 -0.13 -2.37 16 25 C 0.15 2.45 3.20 -67.61 -0.22 2.23 16 26 H 0.07 1.38 6.64 -51.93 -0.34 1.03 16 27 C -0.13 -2.12 7.61 37.16 0.28 -1.84 16 28 C -0.11 -1.08 9.70 -39.58 -0.38 -1.47 16 29 C -0.12 -1.07 9.70 -39.58 -0.38 -1.45 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 33 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.08 0.91 8.04 -51.93 -0.42 0.50 16 36 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 37 H 0.09 0.96 7.93 -51.93 -0.41 0.55 16 38 H 0.09 1.00 7.71 -51.93 -0.40 0.60 16 39 H 0.07 0.93 5.93 -51.92 -0.31 0.62 16 40 H 0.08 1.50 7.74 -51.93 -0.40 1.10 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.37 9.00 4.90 -40.82 -0.20 8.80 16 44 H 0.25 7.59 6.77 -40.82 -0.28 7.32 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.08 1.30 6.54 -51.93 -0.34 0.96 16 48 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.98 6.96 -51.93 -0.36 0.62 16 50 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 51 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 396.39 15.07 5.97 5.97 Total: -1.00 -30.99 396.39 -10.93 -41.92 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -8.57 Total: 10.01 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -3.35 Total: -13.98 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.04 Total: -55.13 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.06 Total: -9.20 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.09 Total: 20.41 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.99 -10.93 -41.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044672621.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.610 kcal (2) G-P(sol) polarization free energy of solvation -30.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds