Wall clock time and date at job start Sat Apr 11 2020 02:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38251 * 119.99826 * 2 1 4 4 C 1.38223 * 119.99843 * 180.02562 * 3 2 1 5 5 C 1.38249 * 120.00021 * 0.02562 * 4 3 2 6 6 C 1.38211 * 120.00045 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.00142 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47576 * 89.99440 * 7 6 5 9 9 O 1.21287 * 119.99617 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00395 * 180.02562 * 8 7 6 11 11 C 1.46931 * 120.62895 * 5.90439 * 10 8 7 12 12 C 1.53192 * 108.77479 * 126.41139 * 11 10 8 13 13 C 1.53103 * 109.33164 * 54.63805 * 12 11 10 14 14 H 1.08993 * 109.45448 * 58.64609 * 13 12 11 15 15 C 1.53001 * 109.50475 * 178.62933 * 13 12 11 16 16 C 1.53049 * 109.50088 * 298.65089 * 13 12 11 17 17 C 1.46931 * 120.63280 * 185.92125 * 10 8 7 18 18 H 1.08994 * 109.58059 * 113.80338 * 17 10 8 19 19 C 1.52997 * 109.58696 * 353.37642 * 17 10 8 20 20 N 1.46497 * 109.47185 * 69.74310 * 19 17 10 21 21 C 1.36936 * 120.00154 * 174.75233 * 20 19 17 22 22 H 1.07996 * 120.00089 * 0.02562 * 21 20 19 23 23 C 1.38817 * 120.00050 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99737 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99951 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47183 * 60.00022 * 25 23 21 27 27 H 1.48501 * 109.46933 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47085 * 299.99833 * 25 23 21 29 29 C 1.38218 * 120.00165 * 180.27953 * 2 1 3 30 30 H 1.08993 * 109.47389 * 89.99972 * 1 2 3 31 31 H 1.09005 * 109.46952 * 209.99937 * 1 2 3 32 32 H 1.08996 * 109.46934 * 329.99751 * 1 2 3 33 33 H 1.08000 * 120.00498 * 0.02562 * 3 2 1 34 34 H 1.08000 * 120.00043 * 179.97438 * 4 3 2 35 35 H 1.07999 * 119.99884 * 179.97438 * 5 4 3 36 36 H 1.09008 * 109.46788 * 329.99102 * 7 6 5 37 37 H 1.08999 * 109.47063 * 210.00094 * 7 6 5 38 38 H 1.09001 * 109.58126 * 246.19799 * 11 10 8 39 39 H 1.09000 * 109.58771 * 6.62501 * 11 10 8 40 40 H 1.09007 * 109.49461 * 174.58750 * 12 11 10 41 41 H 1.09001 * 109.50038 * 294.67920 * 12 11 10 42 42 H 1.09004 * 109.47172 * 180.02562 * 15 13 12 43 43 H 1.08996 * 109.47364 * 300.04997 * 15 13 12 44 44 H 1.09007 * 109.47197 * 60.05049 * 15 13 12 45 45 H 1.08993 * 109.49865 * 301.38492 * 16 13 12 46 46 H 1.08999 * 109.49717 * 181.31454 * 16 13 12 47 47 H 1.09000 * 109.47351 * 189.74627 * 19 17 10 48 48 H 1.09006 * 109.47012 * 309.74557 * 19 17 10 49 49 H 0.97009 * 120.00019 * 354.75444 * 20 19 17 50 50 H 0.96998 * 119.99613 * 179.97438 * 24 23 21 51 51 H 1.08000 * 119.99910 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 3.5806 -1.1969 -0.0027 7 6 4.3342 -2.5020 -0.0044 8 6 4.5860 -2.9387 1.4157 9 8 4.1920 -2.2573 2.3385 10 7 5.2491 -4.0862 1.6604 11 6 5.8446 -4.8560 0.5597 12 6 7.3244 -5.0994 0.8723 13 6 7.4495 -5.7658 2.2450 14 1 6.8973 -6.7054 2.2440 15 6 8.9240 -6.0417 2.5464 16 6 6.8749 -4.8377 3.3177 17 6 5.3900 -4.5914 3.0330 18 1 4.8381 -5.5255 3.1368 19 6 4.8434 -3.5570 4.0189 20 7 3.3861 -3.4812 3.8893 21 6 2.6621 -2.6979 4.7480 22 1 3.1655 -2.1357 5.5206 23 6 1.2812 -2.6265 4.6255 24 7 0.6678 -3.3122 3.6843 25 14 0.2937 -1.5574 5.7966 26 1 0.7382 -0.1461 5.6725 27 1 -1.1489 -1.6542 5.4578 28 1 0.5066 -2.0228 7.1906 29 6 2.1981 -1.1970 -0.0058 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.6583 2.1326 0.0004 34 1 4.1204 2.1326 -0.0010 35 1 5.3517 0.0001 -0.0024 36 1 5.2864 -2.3711 -0.5187 37 1 3.7449 -3.2611 -0.5189 38 1 5.3297 -5.8118 0.4620 39 1 5.7551 -4.2937 -0.3698 40 1 7.7546 -5.7506 0.1113 41 1 7.8559 -4.1478 0.8801 42 1 9.0124 -6.5166 3.5235 43 1 9.3335 -6.7027 1.7825 44 1 9.4765 -5.1021 2.5480 45 1 7.4106 -3.8886 3.3026 46 1 6.9852 -5.3021 4.2976 47 1 5.1029 -3.8515 5.0357 48 1 5.2787 -2.5817 3.8008 49 1 2.9340 -3.9860 3.1951 50 1 -0.2972 -3.2626 3.5989 51 1 1.6581 -2.1323 -0.0100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691837708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:40:18 Heat of formation + Delta-G solvation = 25.482757 kcal Electronic energy + Delta-G solvation = -30023.628349 eV Core-core repulsion = 26309.994688 eV Total energy + Delta-G solvation = -3713.633662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.19737 -38.89368 -37.15499 -34.60355 -33.56175 -32.95110 -31.99298 -31.36850 -29.73203 -28.46144 -27.16034 -26.38369 -25.30622 -23.22918 -22.66509 -21.98931 -21.42922 -20.21827 -19.92801 -18.48818 -16.96129 -16.21395 -16.10458 -15.49102 -15.35894 -14.74915 -14.60496 -14.45506 -14.26577 -13.89998 -13.52037 -13.38409 -13.21740 -13.05712 -12.89802 -12.75598 -12.67507 -12.49309 -12.12414 -11.96746 -11.84072 -11.70226 -11.57962 -11.42043 -11.36763 -10.95033 -10.83974 -10.68075 -10.63767 -10.61952 -10.55170 -10.38694 -10.21596 -9.79870 -9.42800 -8.65353 -8.40039 -8.20318 -8.03168 -7.95720 -6.43687 -5.48231 -2.67291 1.77438 1.87804 3.45760 3.51205 3.60152 3.61962 3.64670 4.20985 4.70535 4.74161 4.83995 4.88177 5.05152 5.14739 5.18591 5.25411 5.27700 5.39916 5.49488 5.49943 5.58018 5.59709 5.62231 5.68645 5.73722 5.79097 5.79943 5.85472 5.87472 5.89600 5.94927 5.96048 6.08377 6.09645 6.14616 6.16182 6.21620 6.26189 6.44870 6.52235 6.57141 6.62294 6.76153 6.85330 6.99892 7.03885 7.09037 7.38712 7.46878 7.93814 8.07483 8.70153 9.09568 9.81802 10.42066 10.76858 11.75846 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009229 B = 0.005278 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.127511 B = 5303.698803 C = 7582.135273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.081 4.081 3 C -0.126 4.126 4 C -0.122 4.122 5 C -0.114 4.114 6 C -0.055 4.055 7 C -0.096 4.096 8 C 0.476 3.524 9 O -0.434 6.434 10 N -0.619 5.619 11 C 0.112 3.888 12 C -0.128 4.128 13 C -0.092 4.092 14 H 0.070 0.930 15 C -0.145 4.145 16 C -0.121 4.121 17 C 0.144 3.856 18 H 0.065 0.935 19 C 0.161 3.839 20 N -0.696 5.696 21 C -0.203 4.203 22 H 0.061 0.939 23 C -0.018 4.018 24 N -0.938 5.938 25 Si 0.896 3.104 26 H -0.290 1.290 27 H -0.294 1.294 28 H -0.291 1.291 29 C -0.086 4.086 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.011 0.989 48 H 0.042 0.958 49 H 0.378 0.622 50 H 0.248 0.752 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.732 -1.535 -12.370 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.081 4.081 3 C -0.145 4.145 4 C -0.140 4.140 5 C -0.133 4.133 6 C -0.055 4.055 7 C -0.137 4.137 8 C 0.260 3.740 9 O -0.301 6.301 10 N -0.358 5.358 11 C -0.012 4.012 12 C -0.166 4.166 13 C -0.110 4.110 14 H 0.088 0.912 15 C -0.202 4.202 16 C -0.160 4.160 17 C 0.040 3.960 18 H 0.083 0.917 19 C 0.033 3.967 20 N -0.339 5.339 21 C -0.336 4.336 22 H 0.079 0.921 23 C -0.212 4.212 24 N -0.589 5.589 25 Si 0.729 3.271 26 H -0.218 1.218 27 H -0.220 1.220 28 H -0.218 1.218 29 C -0.104 4.104 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.028 0.972 48 H 0.059 0.941 49 H 0.212 0.788 50 H 0.058 0.942 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.429 -0.987 -11.691 17.092 hybrid contribution -0.703 0.348 0.411 0.885 sum 11.727 -0.639 -11.281 16.284 Atomic orbital electron populations 1.20770 0.91558 1.03265 1.01412 1.19817 0.95936 0.93096 0.99250 1.20914 0.94241 0.97197 1.02099 1.20925 0.94237 0.97490 1.01341 1.20803 0.99034 0.92136 1.01288 1.19226 0.93515 0.93504 0.99258 1.20681 1.00620 0.95927 0.96429 1.20317 0.80250 0.82479 0.90914 1.91128 1.45045 1.51069 1.42821 1.47896 1.57093 1.24213 1.06595 1.21577 0.92952 0.96476 0.90218 1.21987 0.96563 1.01010 0.97069 1.21117 0.96197 0.98794 0.94911 0.91182 1.21817 0.95861 1.01295 1.01242 1.21966 0.95871 0.99707 0.98414 1.21453 0.94570 0.98148 0.81788 0.91659 1.20895 0.87311 0.95507 0.92950 1.42178 0.99517 1.54376 1.37847 1.19069 0.88887 1.18500 1.07100 0.92054 1.24520 0.96370 1.01144 0.99208 1.69638 1.07756 1.46219 1.35283 0.86396 0.79380 0.80723 0.80581 1.21752 1.22030 1.21811 1.20861 0.93368 0.97730 0.98410 0.91833 0.90897 0.91986 0.86820 0.86757 0.86987 0.89477 0.89155 0.92074 0.90264 0.91323 0.91676 0.92716 0.92964 0.92844 0.91656 0.91098 0.97175 0.94085 0.78811 0.94225 0.86172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 10.01 36.00 0.36 -1.40 16 2 C -0.08 -1.42 5.88 -104.63 -0.62 -2.04 16 3 C -0.13 -2.04 9.70 -39.58 -0.38 -2.43 16 4 C -0.12 -1.89 10.05 -39.58 -0.40 -2.29 16 5 C -0.11 -1.85 9.70 -39.59 -0.38 -2.23 16 6 C -0.05 -0.94 4.37 -104.62 -0.46 -1.40 16 7 C -0.10 -1.44 4.25 -29.03 -0.12 -1.57 16 8 C 0.48 8.84 7.08 -10.99 -0.08 8.76 16 9 O -0.43 -10.36 9.87 5.55 0.05 -10.31 16 10 N -0.62 -9.74 2.97 -165.22 -0.49 -10.23 16 11 C 0.11 1.25 6.32 -3.71 -0.02 1.23 16 12 C -0.13 -1.23 5.36 -26.58 -0.14 -1.37 16 13 C -0.09 -0.95 2.68 -90.54 -0.24 -1.20 16 14 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 15 C -0.14 -1.27 9.20 37.16 0.34 -0.93 16 16 C -0.12 -1.59 4.64 -26.61 -0.12 -1.71 16 17 C 0.14 2.44 2.93 -67.60 -0.20 2.24 16 18 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 19 C 0.16 3.54 4.87 -4.04 -0.02 3.52 16 20 N -0.70 -18.74 3.24 -59.91 -0.19 -18.94 16 21 C -0.20 -6.12 9.74 -15.06 -0.15 -6.27 16 22 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.02 -0.55 5.50 -17.43 -0.10 -0.65 16 24 N -0.94 -29.46 13.06 55.49 0.72 -28.73 16 25 Si 0.90 24.11 29.55 -169.99 -5.02 19.09 16 26 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 27 H -0.29 -7.89 7.11 56.52 0.40 -7.49 16 28 H -0.29 -7.67 7.11 56.52 0.40 -7.26 16 29 C -0.09 -1.59 9.36 -39.58 -0.37 -1.96 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 32 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 33 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.09 1.03 7.39 -51.92 -0.38 0.64 16 37 H 0.09 1.23 8.07 -51.93 -0.42 0.81 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.75 5.97 -51.93 -0.31 0.44 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.01 0.23 8.12 -51.93 -0.42 -0.19 16 48 H 0.04 0.99 6.28 -51.93 -0.33 0.67 16 49 H 0.38 10.79 7.08 -40.82 -0.29 10.50 16 50 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 51 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 398.68 15.07 6.01 6.01 Total: -1.00 -34.96 398.68 -10.90 -45.86 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -8.88 Total: 8.92 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -3.10 Total: -11.67 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 0.04 Total: -57.90 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.05 Total: -10.31 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -5.02 Total: 19.09 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.96 -10.90 -45.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691837708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.343 kcal (2) G-P(sol) polarization free energy of solvation -34.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds