Wall clock time and date at job start Sat Apr 11 2020 02:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38251 * 119.99826 * 2 1 4 4 C 1.38223 * 119.99843 * 180.02562 * 3 2 1 5 5 C 1.38249 * 120.00021 * 0.02562 * 4 3 2 6 6 C 1.38211 * 120.00045 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.00142 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47576 * 89.99440 * 7 6 5 9 9 O 1.21287 * 119.99617 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00395 * 180.02562 * 8 7 6 11 11 C 1.46931 * 120.62895 * 5.90439 * 10 8 7 12 12 C 1.53192 * 108.77479 * 126.41139 * 11 10 8 13 13 C 1.53103 * 109.33164 * 54.63805 * 12 11 10 14 14 H 1.08993 * 109.45448 * 58.64609 * 13 12 11 15 15 C 1.53001 * 109.50475 * 178.62933 * 13 12 11 16 16 C 1.53049 * 109.50088 * 298.65089 * 13 12 11 17 17 C 1.46931 * 120.63280 * 185.92125 * 10 8 7 18 18 H 1.08994 * 109.58059 * 113.80338 * 17 10 8 19 19 C 1.52997 * 109.58696 * 353.37642 * 17 10 8 20 20 N 1.46497 * 109.47185 * 69.74310 * 19 17 10 21 21 C 1.36936 * 120.00154 * 174.75233 * 20 19 17 22 22 H 1.07996 * 120.00089 * 0.02562 * 21 20 19 23 23 C 1.38817 * 120.00050 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99737 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99951 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47183 * 60.00022 * 25 23 21 27 27 H 1.48501 * 109.46933 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47085 * 299.99833 * 25 23 21 29 29 C 1.38218 * 120.00165 * 180.27953 * 2 1 3 30 30 H 1.08993 * 109.47389 * 89.99972 * 1 2 3 31 31 H 1.09005 * 109.46952 * 209.99937 * 1 2 3 32 32 H 1.08996 * 109.46934 * 329.99751 * 1 2 3 33 33 H 1.08000 * 120.00498 * 0.02562 * 3 2 1 34 34 H 1.08000 * 120.00043 * 179.97438 * 4 3 2 35 35 H 1.07999 * 119.99884 * 179.97438 * 5 4 3 36 36 H 1.09008 * 109.46788 * 329.99102 * 7 6 5 37 37 H 1.08999 * 109.47063 * 210.00094 * 7 6 5 38 38 H 1.09001 * 109.58126 * 246.19799 * 11 10 8 39 39 H 1.09000 * 109.58771 * 6.62501 * 11 10 8 40 40 H 1.09007 * 109.49461 * 174.58750 * 12 11 10 41 41 H 1.09001 * 109.50038 * 294.67920 * 12 11 10 42 42 H 1.09004 * 109.47172 * 180.02562 * 15 13 12 43 43 H 1.08996 * 109.47364 * 300.04997 * 15 13 12 44 44 H 1.09007 * 109.47197 * 60.05049 * 15 13 12 45 45 H 1.08993 * 109.49865 * 301.38492 * 16 13 12 46 46 H 1.08999 * 109.49717 * 181.31454 * 16 13 12 47 47 H 1.09000 * 109.47351 * 189.74627 * 19 17 10 48 48 H 1.09006 * 109.47012 * 309.74557 * 19 17 10 49 49 H 0.97009 * 120.00019 * 354.75444 * 20 19 17 50 50 H 0.96998 * 119.99613 * 179.97438 * 24 23 21 51 51 H 1.08000 * 119.99910 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 3.5806 -1.1969 -0.0027 7 6 4.3342 -2.5020 -0.0044 8 6 4.5860 -2.9387 1.4157 9 8 4.1920 -2.2573 2.3385 10 7 5.2491 -4.0862 1.6604 11 6 5.8446 -4.8560 0.5597 12 6 7.3244 -5.0994 0.8723 13 6 7.4495 -5.7658 2.2450 14 1 6.8973 -6.7054 2.2440 15 6 8.9240 -6.0417 2.5464 16 6 6.8749 -4.8377 3.3177 17 6 5.3900 -4.5914 3.0330 18 1 4.8381 -5.5255 3.1368 19 6 4.8434 -3.5570 4.0189 20 7 3.3861 -3.4812 3.8893 21 6 2.6621 -2.6979 4.7480 22 1 3.1655 -2.1357 5.5206 23 6 1.2812 -2.6265 4.6255 24 7 0.6678 -3.3122 3.6843 25 14 0.2937 -1.5574 5.7966 26 1 0.7382 -0.1461 5.6725 27 1 -1.1489 -1.6542 5.4578 28 1 0.5066 -2.0228 7.1906 29 6 2.1981 -1.1970 -0.0058 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.6583 2.1326 0.0004 34 1 4.1204 2.1326 -0.0010 35 1 5.3517 0.0001 -0.0024 36 1 5.2864 -2.3711 -0.5187 37 1 3.7449 -3.2611 -0.5189 38 1 5.3297 -5.8118 0.4620 39 1 5.7551 -4.2937 -0.3698 40 1 7.7546 -5.7506 0.1113 41 1 7.8559 -4.1478 0.8801 42 1 9.0124 -6.5166 3.5235 43 1 9.3335 -6.7027 1.7825 44 1 9.4765 -5.1021 2.5480 45 1 7.4106 -3.8886 3.3026 46 1 6.9852 -5.3021 4.2976 47 1 5.1029 -3.8515 5.0357 48 1 5.2787 -2.5817 3.8008 49 1 2.9340 -3.9860 3.1951 50 1 -0.2972 -3.2626 3.5989 51 1 1.6581 -2.1323 -0.0100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691837708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:40:18 Heat of formation + Delta-G solvation = 5.918058 kcal Electronic energy + Delta-G solvation = -30024.476738 eV Core-core repulsion = 26309.994688 eV Total energy + Delta-G solvation = -3714.482051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.53076 -40.13416 -38.37229 -36.44224 -34.73636 -34.41063 -33.60948 -32.68138 -31.49643 -29.54893 -28.34222 -27.61462 -27.10042 -24.52476 -24.12871 -23.41885 -22.76988 -21.56897 -20.93336 -19.84122 -19.01400 -17.60988 -17.36650 -16.79464 -16.76554 -16.50697 -15.83059 -15.71835 -15.44199 -15.34036 -14.92300 -14.79519 -14.57971 -14.50485 -14.31546 -13.99136 -13.98602 -13.77411 -13.59088 -13.21335 -13.12550 -12.84306 -12.80888 -12.72972 -12.67683 -12.61384 -12.50301 -12.17468 -12.04415 -11.86735 -11.83169 -11.80750 -11.64976 -11.26249 -11.15334 -10.85270 -9.84898 -9.55474 -9.38081 -9.35980 -8.59168 -7.81740 -4.99438 0.49770 0.57840 1.39752 1.44086 1.48967 2.07819 2.25448 2.61200 2.93718 3.51364 3.72095 3.77463 3.83857 3.91510 3.94433 4.08053 4.14256 4.16674 4.27389 4.36601 4.40704 4.44252 4.46622 4.51724 4.58852 4.63229 4.66155 4.73614 4.76845 4.82316 4.85532 4.87634 4.96161 4.97760 5.01310 5.05931 5.16154 5.17842 5.24352 5.27953 5.32403 5.38209 5.45674 5.52956 5.59994 5.60659 5.71495 5.79050 5.92375 6.21509 6.38984 6.77011 7.45752 7.70395 8.25826 8.49599 9.42279 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009229 B = 0.005278 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.127511 B = 5303.698803 C = 7582.135273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.102 4.102 3 C -0.137 4.137 4 C -0.123 4.123 5 C -0.124 4.124 6 C -0.067 4.067 7 C -0.088 4.088 8 C 0.473 3.527 9 O -0.500 6.500 10 N -0.616 5.616 11 C 0.103 3.897 12 C -0.121 4.121 13 C -0.088 4.088 14 H 0.072 0.928 15 C -0.140 4.140 16 C -0.111 4.111 17 C 0.150 3.850 18 H 0.055 0.945 19 C 0.165 3.835 20 N -0.700 5.700 21 C -0.210 4.210 22 H 0.054 0.946 23 C -0.074 4.074 24 N -0.965 5.965 25 Si 0.956 3.044 26 H -0.292 1.292 27 H -0.293 1.293 28 H -0.280 1.280 29 C -0.117 4.117 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.059 0.941 46 H 0.073 0.927 47 H 0.005 0.995 48 H 0.023 0.977 49 H 0.367 0.633 50 H 0.243 0.757 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.060 -1.576 -13.883 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.102 4.102 3 C -0.155 4.155 4 C -0.141 4.141 5 C -0.142 4.142 6 C -0.067 4.067 7 C -0.128 4.128 8 C 0.260 3.740 9 O -0.372 6.372 10 N -0.353 5.353 11 C -0.019 4.019 12 C -0.159 4.159 13 C -0.107 4.107 14 H 0.090 0.910 15 C -0.197 4.197 16 C -0.150 4.150 17 C 0.046 3.954 18 H 0.073 0.927 19 C 0.038 3.962 20 N -0.341 5.341 21 C -0.343 4.343 22 H 0.072 0.928 23 C -0.265 4.265 24 N -0.618 5.618 25 Si 0.787 3.213 26 H -0.220 1.220 27 H -0.219 1.219 28 H -0.206 1.206 29 C -0.136 4.136 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.156 0.844 34 H 0.163 0.837 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.121 0.879 38 H 0.087 0.913 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.022 0.978 48 H 0.040 0.960 49 H 0.198 0.802 50 H 0.052 0.948 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.823 -1.072 -13.221 19.891 hybrid contribution -1.341 0.359 0.851 1.629 sum 13.481 -0.713 -12.369 18.310 Atomic orbital electron populations 1.20758 0.90732 1.02267 1.02848 1.20146 0.96964 0.93521 0.99598 1.21246 0.94941 0.97518 1.01744 1.21362 0.94262 0.98682 0.99814 1.21150 1.00280 0.91953 1.00835 1.19503 0.93161 0.95088 0.98946 1.20694 1.02511 0.95253 0.94348 1.21002 0.78945 0.82260 0.91807 1.91101 1.47817 1.53401 1.44890 1.48024 1.56274 1.23736 1.07265 1.21959 0.94002 0.96528 0.89407 1.21967 0.95057 1.01583 0.97269 1.21111 0.97271 0.98010 0.94302 0.90956 1.21765 0.94320 1.01717 1.01908 1.21892 0.92760 1.00350 0.99979 1.21263 0.96815 0.95660 0.81668 0.92659 1.20896 0.84870 0.96197 0.94206 1.42203 1.01271 1.53705 1.36911 1.19337 0.89546 1.18322 1.07134 0.92794 1.25196 0.97288 1.02931 1.01127 1.69785 1.07450 1.47681 1.36845 0.85452 0.77829 0.78834 0.79204 1.21960 1.21876 1.20607 1.20923 0.94477 0.97425 1.00750 0.89198 0.93659 0.91022 0.84445 0.83704 0.84759 0.85486 0.87897 0.91273 0.87924 0.88153 0.91780 0.92749 0.91148 0.92843 0.92244 0.90805 0.97755 0.95981 0.80161 0.94796 0.88356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.48 10.01 71.24 0.71 -2.77 16 2 C -0.10 -3.68 5.88 -19.87 -0.12 -3.79 16 3 C -0.14 -4.31 9.70 22.27 0.22 -4.09 16 4 C -0.12 -3.64 10.05 22.27 0.22 -3.42 16 5 C -0.12 -3.86 9.70 22.27 0.22 -3.64 16 6 C -0.07 -2.30 4.37 -19.87 -0.09 -2.38 16 7 C -0.09 -2.55 4.25 29.10 0.12 -2.43 16 8 C 0.47 17.65 7.08 87.66 0.62 18.27 16 9 O -0.50 -24.78 9.87 -3.05 -0.03 -24.81 16 10 N -0.62 -18.90 2.97 -795.02 -2.36 -21.26 16 11 C 0.10 2.01 6.32 86.36 0.55 2.55 16 12 C -0.12 -1.85 5.36 30.69 0.16 -1.69 16 13 C -0.09 -1.58 2.68 -10.74 -0.03 -1.61 16 14 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 15 C -0.14 -1.98 9.20 71.98 0.66 -1.32 16 16 C -0.11 -2.79 4.64 30.68 0.14 -2.65 16 17 C 0.15 5.11 2.93 44.97 0.13 5.24 16 18 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 19 C 0.16 7.55 4.87 86.38 0.42 7.97 16 20 N -0.70 -39.35 3.24 -343.46 -1.11 -40.47 16 21 C -0.21 -13.14 9.74 84.03 0.82 -12.32 16 22 H 0.05 3.36 7.83 -2.91 -0.02 3.34 16 23 C -0.07 -4.64 5.50 84.86 0.47 -4.18 16 24 N -0.96 -62.87 13.06 21.65 0.28 -62.59 16 25 Si 0.96 50.98 29.55 68.60 2.03 53.00 16 26 H -0.29 -15.54 7.11 99.48 0.71 -14.83 16 27 H -0.29 -15.40 7.11 99.48 0.71 -14.70 16 28 H -0.28 -14.26 7.11 99.48 0.71 -13.56 16 29 C -0.12 -4.56 9.36 22.27 0.21 -4.36 16 30 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.04 1.66 8.09 -2.38 -0.02 1.64 16 32 H 0.07 2.08 8.09 -2.39 -0.02 2.06 16 33 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 34 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 35 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 36 H 0.13 2.58 7.39 -2.38 -0.02 2.57 16 37 H 0.10 2.70 8.07 -2.39 -0.02 2.68 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.10 1.55 5.97 -2.39 -0.01 1.53 16 40 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.00 0.22 8.12 -2.39 -0.02 0.20 16 48 H 0.02 1.12 6.28 -2.38 -0.01 1.11 16 49 H 0.37 21.92 7.08 -92.70 -0.66 21.26 16 50 H 0.24 15.46 8.31 -92.71 -0.77 14.69 16 51 H 0.10 4.09 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -80.51 398.68 4.48 -76.03 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: 0.24 Total: 36.70 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 5.44 Total: -16.61 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -3.19 Total: -124.32 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.03 Total: -24.81 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 2.03 Total: 53.00 kcal Total: -80.51 4.48 -76.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691837708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.944 kcal (2) G-P(sol) polarization free energy of solvation -80.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds