Wall clock time and date at job start Sat Apr 11 2020 02:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46841 * 2 1 4 4 C 1.38230 * 120.00264 * 90.00304 * 3 2 1 5 5 C 1.38232 * 120.00102 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99871 * 359.95702 * 5 4 3 7 7 C 1.50707 * 119.99820 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.46998 * 90.00015 * 7 6 5 9 9 O 1.21278 * 120.00136 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99859 * 180.02562 * 8 7 6 11 11 C 1.46923 * 120.62767 * 354.20729 * 10 8 7 12 12 C 1.53194 * 108.77581 * 126.37568 * 11 10 8 13 13 C 1.53039 * 109.31213 * 54.63109 * 12 11 10 14 14 H 1.09003 * 109.46359 * 58.64814 * 13 12 11 15 15 N 1.46504 * 109.46274 * 178.61939 * 13 12 11 16 16 C 1.36941 * 119.99758 * 275.00378 * 15 13 12 17 17 H 1.07998 * 120.00047 * 359.97438 * 16 15 13 18 18 C 1.38811 * 119.99976 * 179.97438 * 16 15 13 19 19 N 1.31623 * 119.99992 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00153 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46819 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47328 * 119.99663 * 20 18 16 23 23 H 1.48503 * 109.46949 * 240.00228 * 20 18 16 24 24 C 1.53045 * 109.53778 * 298.63715 * 13 12 11 25 25 C 1.46926 * 120.63124 * 174.19010 * 10 8 7 26 26 H 1.09001 * 109.58479 * 113.69833 * 25 10 8 27 27 C 1.53000 * 109.58442 * 353.41275 * 25 10 8 28 28 C 1.38230 * 120.00344 * 0.27492 * 6 5 4 29 29 C 1.38237 * 119.99666 * 269.97447 * 3 2 1 30 30 H 1.08999 * 109.47440 * 60.00088 * 1 2 3 31 31 H 1.09002 * 109.46815 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47214 * 300.00246 * 1 2 3 33 33 H 1.09005 * 109.47064 * 240.00287 * 2 1 3 34 34 H 1.08999 * 109.47440 * 119.99912 * 2 1 3 35 35 H 1.08002 * 120.00043 * 359.97184 * 4 3 2 36 36 H 1.08003 * 120.00387 * 179.97438 * 5 4 3 37 37 H 1.08996 * 109.47037 * 329.99959 * 7 6 5 38 38 H 1.08997 * 109.47022 * 210.00081 * 7 6 5 39 39 H 1.08996 * 109.59036 * 6.58675 * 11 10 8 40 40 H 1.09008 * 109.58996 * 246.15460 * 11 10 8 41 41 H 1.09001 * 109.49372 * 294.68632 * 12 11 10 42 42 H 1.08997 * 109.52662 * 174.59967 * 12 11 10 43 43 H 0.97000 * 120.00108 * 94.72061 * 15 13 12 44 44 H 0.96999 * 120.00227 * 180.02562 * 19 18 16 45 45 H 1.09006 * 109.49463 * 181.31347 * 24 13 12 46 46 H 1.08995 * 109.49955 * 301.41297 * 24 13 12 47 47 H 1.09007 * 109.47252 * 65.78715 * 27 25 10 48 48 H 1.08997 * 109.47098 * 185.78697 * 27 25 10 49 49 H 1.08995 * 109.47469 * 305.78663 * 27 25 10 50 50 H 1.07994 * 120.00191 * 179.73243 * 28 6 5 51 51 H 1.07996 * 120.00355 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7239 3.3756 1.1970 6 6 2.9556 4.0268 -0.0001 7 6 3.4589 5.4473 -0.0002 8 6 4.9660 5.4462 0.0008 9 8 5.5716 4.3954 0.0019 10 7 5.6407 6.6129 0.0015 11 6 4.9267 7.8906 -0.1263 12 6 5.3322 8.8006 1.0373 13 6 6.8566 8.9328 1.0690 14 1 7.2054 9.3424 0.1210 15 7 7.2463 9.8289 2.1606 16 6 7.2640 11.1836 1.9610 17 1 6.9912 11.5913 0.9989 18 6 7.6327 12.0327 2.9954 19 7 7.9648 11.5359 4.1681 20 14 7.6563 13.8807 2.7234 21 1 7.2439 14.1810 1.3288 22 1 6.7154 14.5323 3.6695 23 1 9.0290 14.3977 2.9554 24 6 7.4853 7.5553 1.2912 25 6 7.1042 6.6313 0.1304 26 1 7.5478 7.0005 -0.7942 27 6 7.6119 5.2160 0.4135 28 6 2.7206 3.3768 -1.1973 29 6 2.2631 2.0723 -1.1972 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0824 1.5636 2.1324 36 1 2.9036 3.8850 2.1323 37 1 3.0954 5.9616 0.8894 38 1 3.0966 5.9611 -0.8905 39 1 3.8517 7.7133 -0.0941 40 1 5.1927 8.3650 -1.0710 41 1 4.9851 8.3679 1.9756 42 1 4.8844 9.7852 0.9030 43 1 7.4877 9.4629 3.0258 44 1 8.2221 12.1292 4.8910 45 1 8.5699 7.6535 1.3370 46 1 7.1178 7.1343 2.2271 47 1 7.4196 4.5812 -0.4516 48 1 8.6835 5.2470 0.6104 49 1 7.0942 4.8114 1.2832 50 1 2.8974 3.8870 -2.1325 51 1 2.0832 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044761895.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:41:19 Heat of formation + Delta-G solvation = -3.740652 kcal Electronic energy + Delta-G solvation = -28197.170599 eV Core-core repulsion = 24482.269715 eV Total energy + Delta-G solvation = -3714.900884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.56083 -39.41764 -37.36563 -34.90684 -34.48302 -32.96417 -31.92982 -31.06353 -31.02197 -29.28493 -27.44878 -26.81381 -24.33059 -23.59983 -22.92550 -22.84656 -21.78788 -20.66984 -20.06515 -18.83553 -17.14297 -16.72930 -16.46502 -16.05070 -15.75025 -15.28861 -14.90742 -14.82273 -14.04126 -14.01775 -13.90094 -13.74955 -13.66054 -13.55629 -13.34809 -13.16035 -12.95012 -12.70797 -12.24543 -12.22473 -12.03835 -11.85540 -11.81501 -11.59028 -11.41933 -11.34616 -11.00908 -10.97523 -10.94148 -10.85056 -10.75118 -10.45332 -10.23068 -9.85923 -9.73707 -9.00723 -8.98732 -8.94368 -8.56450 -8.37960 -7.00546 -5.80395 -3.09690 1.20766 1.33937 2.73205 3.09559 3.40061 3.45587 3.48012 3.68143 4.47764 4.54469 4.59891 4.65789 4.70287 4.84170 4.89669 5.06846 5.08388 5.14507 5.19379 5.26003 5.30714 5.33514 5.37238 5.41194 5.48295 5.48870 5.56571 5.59636 5.62771 5.68908 5.83194 5.84530 5.90707 5.96826 5.98024 6.02332 6.14559 6.26158 6.30475 6.37321 6.45403 6.48687 6.49436 6.51339 6.55070 6.75486 6.90359 6.91324 7.03603 7.58835 7.66134 8.33586 8.37794 9.49088 10.06691 10.41319 11.42161 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025638 B = 0.002158 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.860899 B =12969.240455 C =13268.199289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.087 4.087 4 C -0.117 4.117 5 C -0.101 4.101 6 C -0.064 4.064 7 C -0.106 4.106 8 C 0.516 3.484 9 O -0.531 6.531 10 N -0.605 5.605 11 C 0.106 3.894 12 C -0.152 4.152 13 C 0.179 3.821 14 H 0.047 0.953 15 N -0.724 5.724 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.134 4.134 25 C 0.148 3.852 26 H 0.069 0.931 27 C -0.135 4.135 28 C -0.103 4.103 29 C -0.118 4.118 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.042 0.958 49 H 0.061 0.939 50 H 0.118 0.882 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.550 -19.711 -10.781 26.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.135 4.135 5 C -0.119 4.119 6 C -0.064 4.064 7 C -0.146 4.146 8 C 0.304 3.696 9 O -0.409 6.409 10 N -0.339 5.339 11 C -0.017 4.017 12 C -0.193 4.193 13 C 0.068 3.932 14 H 0.065 0.935 15 N -0.364 5.364 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.173 4.173 25 C 0.045 3.955 26 H 0.087 0.913 27 C -0.192 4.192 28 C -0.121 4.121 29 C -0.136 4.136 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.061 0.939 49 H 0.081 0.919 50 H 0.136 0.864 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.202 -20.068 -10.838 26.353 hybrid contribution 0.075 1.258 0.332 1.303 sum -13.127 -18.810 -10.505 25.229 Atomic orbital electron populations 1.21747 0.94818 1.01558 1.02215 1.20533 0.96069 0.92856 1.02751 1.19849 0.99464 0.96080 0.93270 1.20943 1.00308 0.94778 0.97434 1.20975 0.98632 0.94854 0.97473 1.19290 0.98845 0.94762 0.93516 1.20780 0.93467 0.95297 1.05042 1.20407 0.89294 0.83527 0.76374 1.90746 1.68917 1.31644 1.49556 1.48248 1.07452 1.06025 1.72173 1.21873 0.96143 0.83786 0.99896 1.22680 1.00959 0.98865 0.96770 1.20165 0.90928 0.89030 0.93038 0.93458 1.42444 1.80575 1.02656 1.10744 1.19277 1.38184 0.82680 0.96898 0.91107 1.24758 1.02304 0.97997 0.95933 1.69674 1.52178 1.33758 1.02389 0.86136 0.77223 0.85709 0.77218 1.20553 1.21901 1.21878 1.22294 1.01467 0.95872 0.97712 1.21279 0.78677 0.97136 0.98425 0.91309 1.22177 0.98722 0.94533 1.03783 1.20929 0.98998 0.94856 0.97308 1.20923 1.00508 0.94764 0.97376 0.92592 0.92527 0.92555 0.91170 0.91133 0.86306 0.86242 0.88004 0.88266 0.90441 0.91450 0.92198 0.90643 0.78273 0.93540 0.90683 0.91870 0.90716 0.93896 0.91950 0.86386 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.08 -0.63 6.06 -27.88 -0.17 -0.80 16 3 C -0.09 -0.85 5.13 -104.62 -0.54 -1.38 16 4 C -0.12 -1.21 9.70 -39.59 -0.38 -1.59 16 5 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 6 C -0.06 -0.72 4.37 -104.62 -0.46 -1.18 16 7 C -0.11 -1.11 4.19 -29.03 -0.12 -1.23 16 8 C 0.52 7.03 7.50 -10.98 -0.08 6.95 16 9 O -0.53 -8.69 11.60 5.56 0.06 -8.63 16 10 N -0.60 -8.19 2.97 -165.22 -0.49 -8.68 16 11 C 0.11 1.31 6.35 -3.71 -0.02 1.28 16 12 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 13 C 0.18 3.36 2.73 -67.88 -0.19 3.18 16 14 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 15 N -0.72 -17.58 5.12 -53.38 -0.27 -17.85 16 16 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 20 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 C -0.13 -2.23 4.84 -26.61 -0.13 -2.36 16 25 C 0.15 2.15 3.49 -67.60 -0.24 1.91 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 C -0.13 -1.98 7.61 37.16 0.28 -1.70 16 28 C -0.10 -1.10 9.70 -39.58 -0.38 -1.49 16 29 C -0.12 -1.17 9.70 -39.58 -0.38 -1.56 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 37 H 0.10 0.96 7.87 -51.93 -0.41 0.55 16 38 H 0.10 0.83 7.65 -51.93 -0.40 0.43 16 39 H 0.08 0.75 5.93 -51.93 -0.31 0.45 16 40 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 44 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.07 1.15 6.54 -51.92 -0.34 0.82 16 48 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.06 1.01 6.96 -51.93 -0.36 0.65 16 50 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 51 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 402.48 15.07 6.07 6.07 Total: -1.00 -31.44 402.48 -11.01 -42.46 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -8.86 Total: 8.47 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -3.22 Total: -11.71 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.04 Total: -53.61 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.06 Total: -8.63 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.44 -11.01 -42.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044761895.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.716 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds