Wall clock time and date at job start Sat Apr 11 2020 02:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36939 * 120.00123 * 2 1 4 4 H 1.07998 * 120.00259 * 159.32881 * 3 2 1 5 5 C 1.38816 * 119.99739 * 339.32614 * 3 2 1 6 6 N 1.31624 * 120.00074 * 322.07399 * 5 3 2 7 7 Si 1.86795 * 120.00017 * 142.07296 * 5 3 2 8 8 H 1.48504 * 109.47023 * 270.00229 * 7 5 3 9 9 H 1.48501 * 109.46848 * 29.99790 * 7 5 3 10 10 H 1.48494 * 109.47404 * 149.99908 * 7 5 3 11 11 C 1.46499 * 120.00022 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.64483 * 180.70068 * 11 2 1 13 13 C 1.55156 * 110.72367 * 303.84568 * 11 2 1 14 14 C 1.55125 * 101.48763 * 153.73174 * 13 11 2 15 15 N 1.47425 * 104.94159 * 323.22717 * 14 13 11 16 16 C 1.34780 * 125.64286 * 203.96820 * 15 14 13 17 17 O 1.21554 * 119.99218 * 186.18175 * 16 15 14 18 18 C 1.47838 * 120.00425 * 6.18447 * 16 15 14 19 19 C 1.39602 * 120.14132 * 271.21574 * 18 16 15 20 20 C 1.37929 * 119.85078 * 179.97438 * 19 18 16 21 21 C 1.38384 * 120.15032 * 0.02562 * 20 19 18 22 22 C 1.38338 * 120.28733 * 359.97438 * 21 20 19 23 23 C 1.37983 * 120.14672 * 359.74145 * 22 21 20 24 24 C 1.50696 * 120.07243 * 180.25018 * 23 22 21 25 25 C 1.53005 * 109.47425 * 5.39720 * 24 23 22 26 26 C 1.53009 * 109.46612 * 125.39151 * 24 23 22 27 27 C 1.52994 * 109.47547 * 245.39076 * 24 23 22 28 28 C 1.47016 * 108.70739 * 23.99775 * 15 14 13 29 29 H 1.08997 * 109.47203 * 93.33700 * 1 2 3 30 30 H 1.09003 * 109.47087 * 213.33226 * 1 2 3 31 31 H 1.08995 * 109.47427 * 333.33966 * 1 2 3 32 32 H 0.96999 * 119.99806 * 356.56672 * 6 5 3 33 33 H 1.08998 * 111.00486 * 271.93913 * 13 11 2 34 34 H 1.09001 * 111.00207 * 35.79246 * 13 11 2 35 35 H 1.09001 * 110.41871 * 204.29580 * 14 13 11 36 36 H 1.09001 * 110.29566 * 82.09255 * 14 13 11 37 37 H 1.07994 * 120.07218 * 359.95061 * 19 18 16 38 38 H 1.08002 * 119.92866 * 179.97438 * 20 19 18 39 39 H 1.07995 * 119.85539 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.92363 * 179.97438 * 22 21 20 41 41 H 1.08997 * 109.46958 * 59.99167 * 25 24 23 42 42 H 1.08995 * 109.47168 * 180.02562 * 25 24 23 43 43 H 1.09006 * 109.46569 * 299.99727 * 25 24 23 44 44 H 1.08998 * 109.46518 * 73.49903 * 26 24 23 45 45 H 1.09006 * 109.46815 * 193.49311 * 26 24 23 46 46 H 1.08995 * 109.46848 * 313.49612 * 26 24 23 47 47 H 1.09003 * 109.46986 * 69.28201 * 27 24 23 48 48 H 1.08996 * 109.47480 * 189.28303 * 27 24 23 49 49 H 1.09000 * 109.47198 * 309.28735 * 27 24 23 50 50 H 1.09000 * 109.88819 * 239.52574 * 28 15 14 51 51 H 1.09007 * 109.88264 * 118.35806 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1775 1.2160 0.3302 5 6 1.5226 2.3494 -0.4244 6 7 0.6859 2.3132 -1.4399 7 14 1.8662 3.9663 0.4455 8 1 0.8983 4.1455 1.5575 9 1 3.2479 3.9518 0.9895 10 1 1.7255 5.0868 -0.5186 11 6 2.1975 -1.2687 0.0006 12 1 3.2729 -1.0916 0.0130 13 6 1.7720 -2.1478 1.2062 14 6 2.0736 -3.5724 0.6715 15 7 1.7209 -3.5240 -0.7591 16 6 1.3826 -4.5831 -1.5210 17 8 1.2193 -4.4436 -2.7174 18 6 1.2101 -5.9143 -0.9015 19 6 2.3024 -6.7741 -0.7721 20 6 2.1347 -8.0145 -0.1928 21 6 0.8873 -8.4078 0.2592 22 6 -0.1991 -7.5605 0.1339 23 6 -0.0439 -6.3146 -0.4384 24 6 -1.2274 -5.3909 -0.5689 25 6 -2.4401 -6.0143 0.1253 26 6 -0.9000 -4.0472 0.0858 27 6 -1.5436 -5.1730 -2.0498 28 6 1.7999 -2.1293 -1.2173 29 1 -0.3633 -0.0598 -1.0259 30 1 -0.3633 -0.8586 0.5647 31 1 -0.3634 0.9183 0.4611 32 1 0.5453 1.4840 -1.9231 33 1 2.3744 -1.9221 2.0861 34 1 0.7099 -2.0291 1.4208 35 1 1.4604 -4.3104 1.1887 36 1 3.1312 -3.8061 0.7938 37 1 3.2762 -6.4688 -1.1251 38 1 2.9788 -8.6809 -0.0924 39 1 0.7615 -9.3799 0.7124 40 1 -1.1701 -7.8736 0.4883 41 1 -2.2147 -6.1695 1.1803 42 1 -3.2961 -5.3463 0.0305 43 1 -2.6732 -6.9716 -0.3411 44 1 -0.2036 -3.4956 -0.5457 45 1 -1.8163 -3.4694 0.2070 46 1 -0.4472 -4.2195 1.0621 47 1 -1.9348 -6.0962 -2.4774 48 1 -2.2872 -4.3825 -2.1502 49 1 -0.6340 -4.8854 -2.5771 50 1 0.8300 -1.8082 -1.5973 51 1 2.5550 -2.0378 -1.9981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971753607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:41:06 Heat of formation + Delta-G solvation = 25.737200 kcal Electronic energy + Delta-G solvation = -30398.809761 eV Core-core repulsion = 26685.187133 eV Total energy + Delta-G solvation = -3713.622628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.03644 -38.95147 -37.42087 -36.39280 -35.07072 -32.08570 -31.18265 -30.21395 -29.71400 -28.11349 -27.45498 -27.02991 -26.14612 -24.44241 -23.02133 -22.52689 -22.27154 -19.89412 -19.32702 -19.14132 -17.56824 -17.44829 -16.52436 -15.94209 -15.65500 -15.32922 -14.56579 -14.39901 -14.25120 -14.15737 -14.01295 -13.81356 -13.55279 -13.25667 -12.96307 -12.79018 -12.67908 -12.51822 -12.25146 -12.14963 -12.05235 -11.89227 -11.66504 -11.62889 -11.37988 -10.97601 -10.89647 -10.83484 -10.80957 -10.68878 -10.55620 -10.41217 -10.17034 -10.05917 -9.78502 -9.62586 -9.08129 -8.85570 -8.32136 -8.27807 -7.05554 -6.24213 -3.20557 0.99857 1.19266 2.64667 3.11025 3.49812 3.50938 3.54623 3.68542 4.39700 4.49017 4.54197 4.61460 4.80907 4.90483 4.93755 4.94667 5.08991 5.11861 5.23623 5.26788 5.32199 5.40997 5.47195 5.53574 5.63260 5.65667 5.72600 5.76277 5.78455 5.81240 5.86797 5.89100 5.95173 6.02333 6.07080 6.19982 6.20967 6.23142 6.32118 6.33544 6.35904 6.44278 6.47014 6.57119 6.59132 6.73531 6.74423 6.84015 7.05093 7.65800 7.94782 8.23407 8.48725 9.00995 9.78343 10.17112 11.07652 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.003377 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.859746 B = 8288.528983 C = 8713.960708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.133 3.867 2 N -0.584 5.584 3 C -0.378 4.378 4 H 0.062 0.938 5 C -0.012 4.012 6 N -0.892 5.892 7 Si 1.057 2.943 8 H -0.293 1.293 9 H -0.291 1.291 10 H -0.291 1.291 11 C 0.174 3.826 12 H 0.080 0.920 13 C -0.152 4.152 14 C 0.100 3.900 15 N -0.603 5.603 16 C 0.578 3.422 17 O -0.531 6.531 18 C -0.110 4.110 19 C -0.086 4.086 20 C -0.127 4.127 21 C -0.107 4.107 22 C -0.124 4.124 23 C -0.033 4.033 24 C -0.033 4.033 25 C -0.141 4.141 26 C -0.166 4.166 27 C -0.164 4.164 28 C 0.083 3.917 29 H 0.008 0.992 30 H 0.021 0.979 31 H 0.053 0.947 32 H 0.271 0.729 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.085 0.915 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.051 0.949 48 H 0.057 0.943 49 H 0.089 0.911 50 H 0.071 0.929 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.313 -20.985 6.527 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.305 5.305 3 C -0.506 4.506 4 H 0.080 0.920 5 C -0.217 4.217 6 N -0.529 5.529 7 Si 0.887 3.113 8 H -0.220 1.220 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.064 3.936 12 H 0.098 0.902 13 C -0.192 4.192 14 C -0.023 4.023 15 N -0.336 5.336 16 C 0.367 3.633 17 O -0.409 6.409 18 C -0.113 4.113 19 C -0.105 4.105 20 C -0.145 4.145 21 C -0.125 4.125 22 C -0.142 4.142 23 C -0.034 4.034 24 C -0.033 4.033 25 C -0.198 4.198 26 C -0.224 4.224 27 C -0.221 4.221 28 C -0.041 4.041 29 H 0.026 0.974 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.149 0.851 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.104 0.896 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.107 0.893 50 H 0.089 0.911 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.813 -19.268 5.870 20.223 hybrid contribution 0.428 -1.771 -0.081 1.824 sum -1.385 -21.038 5.789 21.864 Atomic orbital electron populations 1.20933 0.83797 0.98886 0.97646 1.43990 1.00930 1.00592 1.84950 1.19887 0.99542 0.85748 1.45413 0.91999 1.25714 0.98902 1.01282 0.95807 1.70789 1.39515 1.29234 1.13369 0.83642 0.75557 0.75974 0.76125 1.22014 1.21741 1.21802 1.21375 0.96609 0.85643 0.89964 0.90199 1.23362 1.02830 0.92970 1.00014 1.22437 0.99937 0.99132 0.80838 1.48626 1.66202 1.07573 1.11218 1.17890 0.76262 0.83283 0.85871 1.90744 1.50999 1.84887 1.14304 1.19726 0.94510 0.95099 1.02006 1.21093 0.97676 0.93762 0.97936 1.21035 0.97651 0.96176 0.99646 1.21260 0.92779 0.99453 0.98969 1.21125 0.99394 0.93363 1.00325 1.19885 0.93164 0.94770 0.95535 1.19586 0.92222 0.94474 0.97057 1.21971 0.97108 1.00605 1.00105 1.22532 1.03033 0.95550 1.01255 1.22314 1.04343 1.01402 0.94063 1.22974 1.02252 0.78857 0.99989 0.97378 0.96073 0.92866 0.91877 0.90256 0.90409 0.90914 0.91623 0.85737 0.85664 0.85864 0.85132 0.92382 0.92139 0.92461 0.89620 0.92308 0.92513 0.93013 0.92442 0.89253 0.91117 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.00 8.03 59.84 0.48 3.48 16 2 N -0.58 -13.67 2.84 -171.39 -0.49 -14.16 16 3 C -0.38 -10.08 9.35 -15.06 -0.14 -10.23 16 4 H 0.06 1.67 8.01 -52.49 -0.42 1.25 16 5 C -0.01 -0.33 4.37 -17.43 -0.08 -0.41 16 6 N -0.89 -26.11 12.83 55.49 0.71 -25.40 16 7 Si 1.06 24.61 30.05 -169.99 -5.11 19.50 16 8 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 9 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 C 0.17 3.33 3.44 -66.09 -0.23 3.10 16 12 H 0.08 1.56 7.92 -51.93 -0.41 1.15 16 13 C -0.15 -2.31 6.64 -24.47 -0.16 -2.47 16 14 C 0.10 1.32 5.74 -2.41 -0.01 1.31 16 15 N -0.60 -9.53 1.71 -171.49 -0.29 -9.83 16 16 C 0.58 9.53 4.21 -12.33 -0.05 9.48 16 17 O -0.53 -10.62 15.00 5.32 0.08 -10.54 16 18 C -0.11 -1.51 4.26 -104.97 -0.45 -1.96 16 19 C -0.09 -1.00 9.79 -39.19 -0.38 -1.39 16 20 C -0.13 -1.20 10.03 -39.64 -0.40 -1.59 16 21 C -0.11 -0.95 10.04 -39.49 -0.40 -1.35 16 22 C -0.12 -1.25 8.99 -39.64 -0.36 -1.61 16 23 C -0.03 -0.41 4.73 -104.23 -0.49 -0.90 16 24 C -0.03 -0.41 0.75 -155.66 -0.12 -0.53 16 25 C -0.14 -1.38 7.09 37.16 0.26 -1.11 16 26 C -0.17 -2.25 6.92 37.16 0.26 -1.99 16 27 C -0.16 -2.30 8.33 37.15 0.31 -1.99 16 28 C 0.08 1.56 6.08 -3.06 -0.02 1.54 16 29 H 0.01 0.20 6.80 -51.93 -0.35 -0.16 16 30 H 0.02 0.41 6.14 -51.93 -0.32 0.09 16 31 H 0.05 1.31 7.24 -51.93 -0.38 0.93 16 32 H 0.27 8.05 6.98 -40.82 -0.29 7.77 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.23 6.14 -51.93 -0.32 0.92 16 35 H 0.07 0.88 5.91 -51.93 -0.31 0.57 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.13 1.07 5.90 -52.49 -0.31 0.76 16 41 H 0.06 0.51 7.77 -51.93 -0.40 0.11 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.50 7.26 -51.93 -0.38 0.12 16 44 H 0.09 1.36 3.47 -51.93 -0.18 1.18 16 45 H 0.06 0.78 8.07 -51.93 -0.42 0.36 16 46 H 0.06 0.72 6.43 -51.93 -0.33 0.38 16 47 H 0.05 0.66 8.12 -51.93 -0.42 0.23 16 48 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 49 H 0.09 1.52 4.16 -51.93 -0.22 1.30 16 50 H 0.07 1.49 6.59 -51.93 -0.34 1.14 16 51 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -30.61 380.30 -9.31 -39.92 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -7.97 Total: 3.38 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.97 Total: -8.61 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -0.07 Total: -49.38 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.11 Total: 19.50 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.61 -9.31 -39.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971753607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.657 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds