Wall clock time and date at job start Sat Apr 11 2020 02:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36939 * 120.00123 * 2 1 4 4 H 1.07998 * 120.00259 * 159.32881 * 3 2 1 5 5 C 1.38816 * 119.99739 * 339.32614 * 3 2 1 6 6 N 1.31624 * 120.00074 * 322.07399 * 5 3 2 7 7 Si 1.86795 * 120.00017 * 142.07296 * 5 3 2 8 8 H 1.48504 * 109.47023 * 270.00229 * 7 5 3 9 9 H 1.48501 * 109.46848 * 29.99790 * 7 5 3 10 10 H 1.48494 * 109.47404 * 149.99908 * 7 5 3 11 11 C 1.46499 * 120.00022 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.64483 * 180.70068 * 11 2 1 13 13 C 1.55156 * 110.72367 * 303.84568 * 11 2 1 14 14 C 1.55125 * 101.48763 * 153.73174 * 13 11 2 15 15 N 1.47425 * 104.94159 * 323.22717 * 14 13 11 16 16 C 1.34780 * 125.64286 * 203.96820 * 15 14 13 17 17 O 1.21554 * 119.99218 * 186.18175 * 16 15 14 18 18 C 1.47838 * 120.00425 * 6.18447 * 16 15 14 19 19 C 1.39602 * 120.14132 * 271.21574 * 18 16 15 20 20 C 1.37929 * 119.85078 * 179.97438 * 19 18 16 21 21 C 1.38384 * 120.15032 * 0.02562 * 20 19 18 22 22 C 1.38338 * 120.28733 * 359.97438 * 21 20 19 23 23 C 1.37983 * 120.14672 * 359.74145 * 22 21 20 24 24 C 1.50696 * 120.07243 * 180.25018 * 23 22 21 25 25 C 1.53005 * 109.47425 * 5.39720 * 24 23 22 26 26 C 1.53009 * 109.46612 * 125.39151 * 24 23 22 27 27 C 1.52994 * 109.47547 * 245.39076 * 24 23 22 28 28 C 1.47016 * 108.70739 * 23.99775 * 15 14 13 29 29 H 1.08997 * 109.47203 * 93.33700 * 1 2 3 30 30 H 1.09003 * 109.47087 * 213.33226 * 1 2 3 31 31 H 1.08995 * 109.47427 * 333.33966 * 1 2 3 32 32 H 0.96999 * 119.99806 * 356.56672 * 6 5 3 33 33 H 1.08998 * 111.00486 * 271.93913 * 13 11 2 34 34 H 1.09001 * 111.00207 * 35.79246 * 13 11 2 35 35 H 1.09001 * 110.41871 * 204.29580 * 14 13 11 36 36 H 1.09001 * 110.29566 * 82.09255 * 14 13 11 37 37 H 1.07994 * 120.07218 * 359.95061 * 19 18 16 38 38 H 1.08002 * 119.92866 * 179.97438 * 20 19 18 39 39 H 1.07995 * 119.85539 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.92363 * 179.97438 * 22 21 20 41 41 H 1.08997 * 109.46958 * 59.99167 * 25 24 23 42 42 H 1.08995 * 109.47168 * 180.02562 * 25 24 23 43 43 H 1.09006 * 109.46569 * 299.99727 * 25 24 23 44 44 H 1.08998 * 109.46518 * 73.49903 * 26 24 23 45 45 H 1.09006 * 109.46815 * 193.49311 * 26 24 23 46 46 H 1.08995 * 109.46848 * 313.49612 * 26 24 23 47 47 H 1.09003 * 109.46986 * 69.28201 * 27 24 23 48 48 H 1.08996 * 109.47480 * 189.28303 * 27 24 23 49 49 H 1.09000 * 109.47198 * 309.28735 * 27 24 23 50 50 H 1.09000 * 109.88819 * 239.52574 * 28 15 14 51 51 H 1.09007 * 109.88264 * 118.35806 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1775 1.2160 0.3302 5 6 1.5226 2.3494 -0.4244 6 7 0.6859 2.3132 -1.4399 7 14 1.8662 3.9663 0.4455 8 1 0.8983 4.1455 1.5575 9 1 3.2479 3.9518 0.9895 10 1 1.7255 5.0868 -0.5186 11 6 2.1975 -1.2687 0.0006 12 1 3.2729 -1.0916 0.0130 13 6 1.7720 -2.1478 1.2062 14 6 2.0736 -3.5724 0.6715 15 7 1.7209 -3.5240 -0.7591 16 6 1.3826 -4.5831 -1.5210 17 8 1.2193 -4.4436 -2.7174 18 6 1.2101 -5.9143 -0.9015 19 6 2.3024 -6.7741 -0.7721 20 6 2.1347 -8.0145 -0.1928 21 6 0.8873 -8.4078 0.2592 22 6 -0.1991 -7.5605 0.1339 23 6 -0.0439 -6.3146 -0.4384 24 6 -1.2274 -5.3909 -0.5689 25 6 -2.4401 -6.0143 0.1253 26 6 -0.9000 -4.0472 0.0858 27 6 -1.5436 -5.1730 -2.0498 28 6 1.7999 -2.1293 -1.2173 29 1 -0.3633 -0.0598 -1.0259 30 1 -0.3633 -0.8586 0.5647 31 1 -0.3634 0.9183 0.4611 32 1 0.5453 1.4840 -1.9231 33 1 2.3744 -1.9221 2.0861 34 1 0.7099 -2.0291 1.4208 35 1 1.4604 -4.3104 1.1887 36 1 3.1312 -3.8061 0.7938 37 1 3.2762 -6.4688 -1.1251 38 1 2.9788 -8.6809 -0.0924 39 1 0.7615 -9.3799 0.7124 40 1 -1.1701 -7.8736 0.4883 41 1 -2.2147 -6.1695 1.1803 42 1 -3.2961 -5.3463 0.0305 43 1 -2.6732 -6.9716 -0.3411 44 1 -0.2036 -3.4956 -0.5457 45 1 -1.8163 -3.4694 0.2070 46 1 -0.4472 -4.2195 1.0621 47 1 -1.9348 -6.0962 -2.4774 48 1 -2.2872 -4.3825 -2.1502 49 1 -0.6340 -4.8854 -2.5771 50 1 0.8300 -1.8082 -1.5973 51 1 2.5550 -2.0378 -1.9981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971753607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:41:05 Heat of formation + Delta-G solvation = 10.423834 kcal Electronic energy + Delta-G solvation = -30399.473799 eV Core-core repulsion = 26685.187133 eV Total energy + Delta-G solvation = -3714.286666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.15409 -40.10305 -38.86031 -37.28563 -36.82353 -33.68555 -32.37177 -31.25486 -30.96452 -29.58263 -28.32286 -28.18259 -28.07194 -25.77177 -24.23389 -23.83111 -23.40080 -21.18192 -20.76098 -20.14142 -19.47450 -18.61759 -17.84176 -17.07183 -16.84843 -16.44615 -16.02292 -15.73565 -15.43414 -15.34540 -15.18351 -15.11231 -14.92331 -14.59493 -14.39536 -14.18853 -13.89688 -13.65313 -13.55158 -13.25515 -13.17332 -12.95292 -12.82674 -12.79453 -12.60950 -12.49765 -12.44766 -12.37470 -12.33528 -11.88627 -11.86774 -11.81850 -11.69399 -11.52329 -11.37512 -11.01455 -10.34942 -9.89361 -9.69972 -9.65969 -9.05371 -8.39486 -5.32933 0.16112 0.40534 1.38813 1.60446 1.65534 1.84306 1.86538 2.64729 2.73294 3.09177 3.36941 3.40891 3.55637 3.70948 3.76268 3.93636 4.01125 4.05632 4.14377 4.19100 4.22238 4.28375 4.33257 4.48132 4.49474 4.53695 4.60026 4.63967 4.69816 4.72062 4.80202 4.83392 4.84199 4.88046 4.90398 4.98080 5.01589 5.04479 5.11008 5.15319 5.18247 5.23002 5.30195 5.33170 5.36507 5.45318 5.55281 5.61590 5.85653 5.98400 6.30811 6.39309 6.93850 6.98432 7.75397 8.14685 8.89925 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.003377 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.859746 B = 8288.528983 C = 8713.960708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.150 3.850 2 N -0.598 5.598 3 C -0.377 4.377 4 H 0.060 0.940 5 C -0.065 4.065 6 N -0.924 5.924 7 Si 1.109 2.891 8 H -0.283 1.283 9 H -0.270 1.270 10 H -0.300 1.300 11 C 0.169 3.831 12 H 0.076 0.924 13 C -0.135 4.135 14 C 0.107 3.893 15 N -0.599 5.599 16 C 0.580 3.420 17 O -0.579 6.579 18 C -0.132 4.132 19 C -0.098 4.098 20 C -0.120 4.120 21 C -0.096 4.096 22 C -0.122 4.122 23 C -0.046 4.046 24 C -0.032 4.032 25 C -0.135 4.135 26 C -0.164 4.164 27 C -0.164 4.164 28 C 0.098 3.902 29 H -0.018 1.018 30 H 0.053 0.947 31 H 0.029 0.971 32 H 0.252 0.748 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.154 0.846 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.049 0.951 49 H 0.056 0.944 50 H 0.039 0.961 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.912 -24.337 9.846 26.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.320 5.320 3 C -0.506 4.506 4 H 0.077 0.923 5 C -0.264 4.264 6 N -0.563 5.563 7 Si 0.934 3.066 8 H -0.210 1.210 9 H -0.195 1.195 10 H -0.227 1.227 11 C 0.060 3.940 12 H 0.094 0.906 13 C -0.175 4.175 14 C -0.015 4.015 15 N -0.331 5.331 16 C 0.371 3.629 17 O -0.460 6.460 18 C -0.135 4.135 19 C -0.116 4.116 20 C -0.138 4.138 21 C -0.114 4.114 22 C -0.139 4.139 23 C -0.047 4.047 24 C -0.032 4.032 25 C -0.192 4.192 26 C -0.221 4.221 27 C -0.221 4.221 28 C -0.027 4.027 29 H 0.000 1.000 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.118 0.882 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.142 0.858 38 H 0.173 0.827 39 H 0.177 0.823 40 H 0.172 0.828 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.068 0.932 49 H 0.075 0.925 50 H 0.058 0.942 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.385 -22.671 9.235 24.519 hybrid contribution 0.350 -0.869 -1.163 1.494 sum -1.035 -23.540 8.072 24.907 Atomic orbital electron populations 1.20695 0.83647 0.98875 0.96310 1.44156 1.01249 1.01368 1.85193 1.20140 0.99617 0.87092 1.43714 0.92260 1.27032 0.98912 1.04655 0.95794 1.70931 1.42014 1.28197 1.15199 0.82945 0.76652 0.71978 0.75015 1.20957 1.19501 1.22684 1.21526 0.96010 0.84624 0.91847 0.90598 1.23219 1.02779 0.92827 0.98638 1.22563 1.01673 0.98279 0.78959 1.48588 1.66113 1.06066 1.12333 1.18476 0.74766 0.84390 0.85295 1.90713 1.52829 1.85802 1.16644 1.19565 0.96171 0.93660 1.04145 1.21234 0.97131 0.94646 0.98612 1.21388 0.99099 0.95249 0.98037 1.21708 0.91870 1.00434 0.97351 1.21418 1.01006 0.92204 0.99307 1.19924 0.92213 0.95921 0.96645 1.19556 0.93868 0.94227 0.95571 1.21935 0.95534 1.00977 1.00796 1.22470 1.02196 0.96160 1.01306 1.22265 1.02514 1.01556 0.95737 1.22497 0.99717 0.81234 0.99285 0.99979 0.92916 0.95248 0.93871 0.88171 0.90860 0.88741 0.89435 0.85767 0.82737 0.82289 0.82813 0.90757 0.92325 0.90993 0.92458 0.92700 0.91265 0.91908 0.93188 0.92495 0.94249 0.94160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.08 8.03 127.77 1.03 8.11 16 2 N -0.60 -28.85 2.84 -696.15 -1.97 -30.83 16 3 C -0.38 -20.52 9.35 84.03 0.79 -19.74 16 4 H 0.06 3.22 8.01 -2.91 -0.02 3.19 16 5 C -0.07 -3.66 4.37 84.86 0.37 -3.29 16 6 N -0.92 -56.52 12.83 21.65 0.28 -56.25 16 7 Si 1.11 50.31 30.05 68.60 2.06 52.38 16 8 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 9 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 10 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 11 C 0.17 6.55 3.44 46.18 0.16 6.71 16 12 H 0.08 3.00 7.92 -2.39 -0.02 2.98 16 13 C -0.14 -3.90 6.64 32.06 0.21 -3.68 16 14 C 0.11 2.64 5.74 86.93 0.50 3.14 16 15 N -0.60 -19.32 1.71 -814.75 -1.40 -20.72 16 16 C 0.58 19.72 4.21 86.78 0.37 20.08 16 17 O -0.58 -24.80 15.00 -3.89 -0.06 -24.86 16 18 C -0.13 -3.48 4.26 -20.09 -0.09 -3.57 16 19 C -0.10 -2.06 9.79 22.53 0.22 -1.84 16 20 C -0.12 -1.75 10.03 22.23 0.22 -1.52 16 21 C -0.10 -1.21 10.04 22.33 0.22 -0.99 16 22 C -0.12 -1.93 8.99 22.23 0.20 -1.73 16 23 C -0.05 -1.05 4.73 -19.61 -0.09 -1.14 16 24 C -0.03 -0.76 0.75 -52.93 -0.04 -0.80 16 25 C -0.14 -2.27 7.09 71.98 0.51 -1.76 16 26 C -0.16 -4.35 6.92 71.99 0.50 -3.86 16 27 C -0.16 -4.72 8.33 71.98 0.60 -4.12 16 28 C 0.10 3.91 6.08 86.73 0.53 4.44 16 29 H -0.02 -0.93 6.80 -2.39 -0.02 -0.95 16 30 H 0.05 2.10 6.14 -2.39 -0.01 2.09 16 31 H 0.03 1.49 7.24 -2.39 -0.02 1.48 16 32 H 0.25 15.98 6.98 -92.71 -0.65 15.33 16 33 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.07 2.21 6.14 -2.39 -0.01 2.19 16 35 H 0.09 2.00 5.91 -2.39 -0.01 1.99 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 38 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 39 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 40 H 0.15 1.70 5.90 -2.91 -0.02 1.69 16 41 H 0.07 1.02 7.77 -2.39 -0.02 1.00 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 1.00 7.26 -2.38 -0.02 0.98 16 44 H 0.06 1.87 3.47 -2.39 -0.01 1.86 16 45 H 0.05 1.45 8.07 -2.38 -0.02 1.43 16 46 H 0.07 1.61 6.43 -2.39 -0.02 1.59 16 47 H 0.06 1.59 8.12 -2.39 -0.02 1.58 16 48 H 0.05 1.44 8.12 -2.39 -0.02 1.42 16 49 H 0.06 2.06 4.16 -2.39 -0.01 2.05 16 50 H 0.04 1.81 6.59 -2.39 -0.02 1.79 16 51 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -71.88 380.30 6.16 -65.72 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 1.05 Total: 20.11 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 6.20 Total: -5.56 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -3.09 Total: -107.79 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.06 Total: -24.86 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 2.06 Total: 52.38 kcal Total: -71.88 6.16 -65.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971753607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.144 kcal (2) G-P(sol) polarization free energy of solvation -71.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds