Wall clock time and date at job start Sat Apr 11 2020 02:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36939 * 119.99828 * 2 1 4 4 H 1.07996 * 120.00117 * 195.32709 * 3 2 1 5 5 C 1.38814 * 119.99759 * 15.32405 * 3 2 1 6 6 N 1.31623 * 120.00130 * 12.74718 * 5 3 2 7 7 Si 1.86806 * 119.99975 * 192.74515 * 5 3 2 8 8 H 1.48500 * 109.46962 * 60.00076 * 7 5 3 9 9 H 1.48494 * 109.46990 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46849 * 300.00322 * 7 5 3 11 11 C 1.46497 * 120.00548 * 180.02562 * 2 1 3 12 12 H 1.08993 * 110.78223 * 176.76015 * 11 2 1 13 13 C 1.55448 * 110.70607 * 53.54635 * 11 2 1 14 14 C 1.54908 * 101.44987 * 206.14928 * 13 11 2 15 15 N 1.47423 * 104.93006 * 37.00259 * 14 13 11 16 16 C 1.34778 * 125.64420 * 155.83822 * 15 14 13 17 17 O 1.21562 * 119.99760 * 174.30450 * 16 15 14 18 18 C 1.47845 * 120.00620 * 354.30236 * 16 15 14 19 19 C 1.39598 * 120.14026 * 91.76414 * 18 16 15 20 20 C 1.37938 * 119.84872 * 179.79138 * 19 18 16 21 21 C 1.38374 * 120.14553 * 0.49410 * 20 19 18 22 22 C 1.38336 * 120.29445 * 359.73694 * 21 20 19 23 23 C 1.37986 * 120.14463 * 0.02673 * 22 21 20 24 24 C 1.50693 * 120.07379 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.47505 * 6.79724 * 24 23 22 26 26 C 1.52996 * 109.47222 * 126.79631 * 24 23 22 27 27 C 1.53004 * 109.47307 * 246.79535 * 24 23 22 28 28 C 1.47019 * 108.70290 * 335.81786 * 15 14 13 29 29 H 1.08999 * 109.47167 * 274.91974 * 1 2 3 30 30 H 1.08995 * 109.46999 * 34.92388 * 1 2 3 31 31 H 1.09002 * 109.46776 * 154.92189 * 1 2 3 32 32 H 0.96999 * 119.99978 * 180.02562 * 6 5 3 33 33 H 1.08993 * 111.11628 * 88.09423 * 13 11 2 34 34 H 1.09003 * 111.01209 * 324.15466 * 13 11 2 35 35 H 1.09003 * 110.36502 * 278.10887 * 14 13 11 36 36 H 1.09003 * 110.36880 * 155.89818 * 14 13 11 37 37 H 1.08001 * 120.07438 * 0.02562 * 19 18 16 38 38 H 1.08007 * 119.92462 * 180.23551 * 20 19 18 39 39 H 1.08002 * 119.85703 * 179.71927 * 21 20 19 40 40 H 1.08002 * 119.92779 * 179.97438 * 22 21 20 41 41 H 1.09005 * 109.47367 * 59.99566 * 25 24 23 42 42 H 1.08994 * 109.47396 * 179.97438 * 25 24 23 43 43 H 1.09003 * 109.46960 * 300.00373 * 25 24 23 44 44 H 1.09007 * 109.47386 * 67.47077 * 26 24 23 45 45 H 1.08998 * 109.47677 * 187.47503 * 26 24 23 46 46 H 1.08999 * 109.47029 * 307.47282 * 26 24 23 47 47 H 1.09006 * 109.46670 * 47.72137 * 27 24 23 48 48 H 1.08998 * 109.46931 * 167.71817 * 27 24 23 49 49 H 1.08995 * 109.47066 * 287.71935 * 27 24 23 50 50 H 1.09007 * 109.88141 * 120.47812 * 28 15 14 51 51 H 1.09001 * 109.88214 * 241.48265 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.2009 1.2026 -0.2472 5 6 1.4926 2.3667 0.3177 6 7 0.2929 2.3274 0.8578 7 14 2.3109 4.0114 -0.0212 8 1 2.5892 4.1356 -1.4746 9 1 1.4086 5.1106 0.4062 10 1 3.5857 4.0953 0.7358 11 6 2.1976 -1.2686 -0.0006 12 1 3.2721 -1.0947 -0.0581 13 6 1.7243 -2.1761 -1.1705 14 6 2.0501 -3.5859 -0.6174 15 7 1.7503 -3.5070 0.8239 16 6 1.4406 -4.5496 1.6199 17 8 1.3127 -4.3831 2.8173 18 6 1.2563 -5.8957 1.0370 19 6 2.3361 -6.7764 0.9517 20 6 2.1564 -8.0325 0.4107 21 6 0.9116 -8.4165 -0.0562 22 6 -0.1614 -7.5468 0.0211 23 6 0.0036 -6.2892 0.5644 24 6 -1.1662 -5.3429 0.6473 25 6 -2.4429 -6.0718 0.2235 26 6 -1.3175 -4.8437 2.0855 27 6 -0.9260 -4.1523 -0.2832 28 6 1.8457 -2.1029 1.2491 29 1 -0.3633 0.0881 1.0239 30 1 -0.3633 0.8426 -0.5883 31 1 -0.3633 -0.9308 -0.4356 32 1 -0.1664 3.1525 1.0795 33 1 2.2906 -1.9725 -2.0793 34 1 0.6544 -2.0625 -1.3451 35 1 3.1030 -3.8207 -0.7736 36 1 1.4200 -4.3360 -1.0954 37 1 3.3090 -6.4764 1.3119 38 1 2.9900 -8.7163 0.3475 39 1 0.7772 -9.3994 -0.4830 40 1 -1.1302 -7.8525 -0.3455 41 1 -2.6141 -6.9201 0.8864 42 1 -3.2891 -5.3875 0.2839 43 1 -2.3351 -6.4276 -0.8012 44 1 -0.4666 -4.2126 2.3426 45 1 -2.2379 -4.2667 2.1750 46 1 -1.3557 -5.6960 2.7638 47 1 -0.6038 -4.5137 -1.2598 48 1 -1.8500 -3.5845 -0.3926 49 1 -0.1532 -3.5107 0.1399 50 1 0.8902 -1.7736 1.6577 51 1 2.6271 -1.9956 2.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971753612.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:41:09 Heat of formation + Delta-G solvation = 33.477756 kcal Electronic energy + Delta-G solvation = -30387.973033 eV Core-core repulsion = 26674.686061 eV Total energy + Delta-G solvation = -3713.286973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.98138 -38.86989 -37.36261 -36.34243 -34.85810 -31.98010 -31.13611 -30.18590 -29.64545 -28.07392 -27.39286 -26.94515 -26.08142 -24.45512 -23.00024 -22.58511 -22.22727 -19.82058 -19.19579 -19.10337 -17.42463 -17.06783 -16.41706 -15.88951 -15.56885 -15.31615 -14.77484 -14.45287 -14.27519 -14.13463 -13.84210 -13.51882 -13.33115 -13.29604 -12.94299 -12.62809 -12.53440 -12.26782 -12.19893 -12.08668 -11.98333 -11.85247 -11.56823 -11.53872 -11.23526 -10.91346 -10.87090 -10.80475 -10.73923 -10.60236 -10.37946 -10.31643 -10.26631 -9.96122 -9.80869 -9.67862 -9.03689 -8.80980 -8.56961 -8.27965 -6.91891 -5.76378 -3.18843 1.04527 1.23446 2.71338 3.17283 3.37134 3.42812 3.43414 3.59322 4.43964 4.45490 4.54767 4.66490 4.84805 4.98084 4.98724 5.01023 5.16178 5.24168 5.29266 5.31280 5.38294 5.53817 5.56234 5.58049 5.69389 5.71740 5.78770 5.83878 5.86600 5.87616 5.92458 5.96628 6.00539 6.09700 6.13348 6.25740 6.29973 6.32517 6.36067 6.39639 6.43325 6.53067 6.60004 6.65946 6.77831 6.81217 6.83856 7.42082 7.67107 7.72740 7.80579 8.28403 8.32746 9.17843 9.80513 10.26002 11.27919 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.003372 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.316079 B = 8302.359497 C = 8786.242990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.587 5.587 3 C -0.259 4.259 4 H 0.073 0.927 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.908 3.092 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.175 3.825 12 H 0.078 0.922 13 C -0.155 4.155 14 C 0.097 3.903 15 N -0.602 5.602 16 C 0.578 3.422 17 O -0.532 6.532 18 C -0.109 4.109 19 C -0.086 4.086 20 C -0.128 4.128 21 C -0.107 4.107 22 C -0.125 4.125 23 C -0.033 4.033 24 C -0.034 4.034 25 C -0.141 4.141 26 C -0.166 4.166 27 C -0.163 4.163 28 C 0.083 3.917 29 H 0.024 0.976 30 H 0.056 0.944 31 H -0.001 1.001 32 H 0.254 0.746 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.089 0.911 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.054 0.946 48 H 0.060 0.940 49 H 0.085 0.915 50 H 0.074 0.926 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.645 -20.652 -5.160 21.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.307 5.307 3 C -0.388 4.388 4 H 0.091 0.909 5 C -0.197 4.197 6 N -0.554 5.554 7 Si 0.738 3.262 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.064 3.936 12 H 0.096 0.904 13 C -0.195 4.195 14 C -0.026 4.026 15 N -0.335 5.335 16 C 0.366 3.634 17 O -0.411 6.411 18 C -0.112 4.112 19 C -0.104 4.104 20 C -0.146 4.146 21 C -0.125 4.125 22 C -0.142 4.142 23 C -0.034 4.034 24 C -0.034 4.034 25 C -0.198 4.198 26 C -0.223 4.223 27 C -0.220 4.220 28 C -0.041 4.041 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.018 0.982 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.148 0.852 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.107 0.893 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.079 0.921 49 H 0.104 0.896 50 H 0.092 0.908 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.860 -20.390 -4.416 20.880 hybrid contribution 0.371 0.772 -0.056 0.859 sum -0.489 -19.617 -4.472 20.127 Atomic orbital electron populations 1.20879 0.82000 0.95869 0.99415 1.43973 1.02125 0.99822 1.84820 1.19248 0.94544 0.84114 1.40863 0.90937 1.24922 0.97136 0.98243 0.99358 1.70114 1.14051 1.26308 1.44878 0.86278 0.78405 0.83424 0.78077 1.21075 1.21638 1.20970 1.21354 0.96362 0.85858 0.90035 0.90358 1.23450 1.03034 0.93061 0.99948 1.22439 1.00267 0.99328 0.80541 1.48631 1.67035 1.07744 1.10114 1.17865 0.76189 0.83490 0.85812 1.90777 1.51175 1.84644 1.14456 1.19742 0.94553 0.94905 1.02031 1.21090 0.97766 0.93503 0.98088 1.21030 0.97609 0.96102 0.99813 1.21249 0.92885 0.99430 0.98967 1.21122 0.99447 0.93202 1.00465 1.19896 0.93243 0.94748 0.95508 1.19590 0.92205 0.94288 0.97282 1.21964 0.96575 1.00321 1.00917 1.22429 1.04162 1.01925 0.93757 1.22426 1.03705 0.97205 0.98639 1.23019 1.02474 0.78393 1.00209 0.95735 0.92537 0.98236 0.93612 0.90336 0.90077 0.91668 0.90857 0.85742 0.85711 0.85914 0.85156 0.92523 0.92116 0.92390 0.89288 0.92588 0.92917 0.92742 0.92125 0.89620 0.90778 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 7.80 59.85 0.47 4.32 16 2 N -0.59 -13.88 2.94 -171.21 -0.50 -14.38 16 3 C -0.26 -6.80 9.72 -15.06 -0.15 -6.95 16 4 H 0.07 1.84 7.77 -52.49 -0.41 1.43 16 5 C 0.00 0.04 5.14 -17.43 -0.09 -0.05 16 6 N -0.91 -25.84 10.26 55.49 0.57 -25.27 16 7 Si 0.91 21.39 29.57 -169.99 -5.03 16.36 16 8 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 C 0.17 3.31 3.45 -65.94 -0.23 3.08 16 12 H 0.08 1.46 7.89 -51.93 -0.41 1.05 16 13 C -0.15 -2.36 6.29 -24.42 -0.15 -2.51 16 14 C 0.10 1.30 5.62 -2.53 -0.01 1.28 16 15 N -0.60 -9.59 1.82 -171.63 -0.31 -9.91 16 16 C 0.58 9.61 4.12 -12.33 -0.05 9.56 16 17 O -0.53 -10.71 15.22 5.31 0.08 -10.63 16 18 C -0.11 -1.51 4.30 -104.97 -0.45 -1.97 16 19 C -0.09 -1.01 9.79 -39.18 -0.38 -1.40 16 20 C -0.13 -1.22 10.03 -39.64 -0.40 -1.62 16 21 C -0.11 -0.97 10.04 -39.50 -0.40 -1.37 16 22 C -0.12 -1.28 8.99 -39.64 -0.36 -1.63 16 23 C -0.03 -0.42 4.73 -104.23 -0.49 -0.91 16 24 C -0.03 -0.42 0.75 -155.66 -0.12 -0.54 16 25 C -0.14 -1.41 7.12 37.16 0.26 -1.14 16 26 C -0.17 -2.46 7.80 37.16 0.29 -2.17 16 27 C -0.16 -2.15 6.86 37.16 0.25 -1.89 16 28 C 0.08 1.56 6.34 -3.07 -0.02 1.54 16 29 H 0.02 0.64 7.51 -51.93 -0.39 0.25 16 30 H 0.06 1.47 6.77 -51.93 -0.35 1.12 16 31 H 0.00 -0.01 6.03 -51.93 -0.31 -0.33 16 32 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.31 5.47 -51.93 -0.28 1.03 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.90 5.75 -51.93 -0.30 0.60 16 37 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 39 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.13 1.09 5.91 -52.49 -0.31 0.78 16 41 H 0.06 0.53 7.83 -51.93 -0.41 0.12 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.50 7.20 -51.93 -0.37 0.13 16 44 H 0.09 1.58 3.72 -51.92 -0.19 1.39 16 45 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 46 H 0.05 0.77 8.13 -51.93 -0.42 0.34 16 47 H 0.05 0.65 7.27 -51.93 -0.38 0.27 16 48 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 49 H 0.09 1.30 3.06 -51.93 -0.16 1.15 16 50 H 0.07 1.59 7.13 -51.92 -0.37 1.22 16 51 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -30.18 378.74 -9.51 -39.69 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -8.00 Total: 2.79 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -2.02 Total: -4.36 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.25 Total: -49.56 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.18 -9.51 -39.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971753612.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.171 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds