Wall clock time and date at job start Sat Apr 11 2020 02:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36939 * 119.99828 * 2 1 4 4 H 1.07996 * 120.00117 * 195.32709 * 3 2 1 5 5 C 1.38814 * 119.99759 * 15.32405 * 3 2 1 6 6 N 1.31623 * 120.00130 * 12.74718 * 5 3 2 7 7 Si 1.86806 * 119.99975 * 192.74515 * 5 3 2 8 8 H 1.48500 * 109.46962 * 60.00076 * 7 5 3 9 9 H 1.48494 * 109.46990 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46849 * 300.00322 * 7 5 3 11 11 C 1.46497 * 120.00548 * 180.02562 * 2 1 3 12 12 H 1.08993 * 110.78223 * 176.76015 * 11 2 1 13 13 C 1.55448 * 110.70607 * 53.54635 * 11 2 1 14 14 C 1.54908 * 101.44987 * 206.14928 * 13 11 2 15 15 N 1.47423 * 104.93006 * 37.00259 * 14 13 11 16 16 C 1.34778 * 125.64420 * 155.83822 * 15 14 13 17 17 O 1.21562 * 119.99760 * 174.30450 * 16 15 14 18 18 C 1.47845 * 120.00620 * 354.30236 * 16 15 14 19 19 C 1.39598 * 120.14026 * 91.76414 * 18 16 15 20 20 C 1.37938 * 119.84872 * 179.79138 * 19 18 16 21 21 C 1.38374 * 120.14553 * 0.49410 * 20 19 18 22 22 C 1.38336 * 120.29445 * 359.73694 * 21 20 19 23 23 C 1.37986 * 120.14463 * 0.02673 * 22 21 20 24 24 C 1.50693 * 120.07379 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.47505 * 6.79724 * 24 23 22 26 26 C 1.52996 * 109.47222 * 126.79631 * 24 23 22 27 27 C 1.53004 * 109.47307 * 246.79535 * 24 23 22 28 28 C 1.47019 * 108.70290 * 335.81786 * 15 14 13 29 29 H 1.08999 * 109.47167 * 274.91974 * 1 2 3 30 30 H 1.08995 * 109.46999 * 34.92388 * 1 2 3 31 31 H 1.09002 * 109.46776 * 154.92189 * 1 2 3 32 32 H 0.96999 * 119.99978 * 180.02562 * 6 5 3 33 33 H 1.08993 * 111.11628 * 88.09423 * 13 11 2 34 34 H 1.09003 * 111.01209 * 324.15466 * 13 11 2 35 35 H 1.09003 * 110.36502 * 278.10887 * 14 13 11 36 36 H 1.09003 * 110.36880 * 155.89818 * 14 13 11 37 37 H 1.08001 * 120.07438 * 0.02562 * 19 18 16 38 38 H 1.08007 * 119.92462 * 180.23551 * 20 19 18 39 39 H 1.08002 * 119.85703 * 179.71927 * 21 20 19 40 40 H 1.08002 * 119.92779 * 179.97438 * 22 21 20 41 41 H 1.09005 * 109.47367 * 59.99566 * 25 24 23 42 42 H 1.08994 * 109.47396 * 179.97438 * 25 24 23 43 43 H 1.09003 * 109.46960 * 300.00373 * 25 24 23 44 44 H 1.09007 * 109.47386 * 67.47077 * 26 24 23 45 45 H 1.08998 * 109.47677 * 187.47503 * 26 24 23 46 46 H 1.08999 * 109.47029 * 307.47282 * 26 24 23 47 47 H 1.09006 * 109.46670 * 47.72137 * 27 24 23 48 48 H 1.08998 * 109.46931 * 167.71817 * 27 24 23 49 49 H 1.08995 * 109.47066 * 287.71935 * 27 24 23 50 50 H 1.09007 * 109.88141 * 120.47812 * 28 15 14 51 51 H 1.09001 * 109.88214 * 241.48265 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.2009 1.2026 -0.2472 5 6 1.4926 2.3667 0.3177 6 7 0.2929 2.3274 0.8578 7 14 2.3109 4.0114 -0.0212 8 1 2.5892 4.1356 -1.4746 9 1 1.4086 5.1106 0.4062 10 1 3.5857 4.0953 0.7358 11 6 2.1976 -1.2686 -0.0006 12 1 3.2721 -1.0947 -0.0581 13 6 1.7243 -2.1761 -1.1705 14 6 2.0501 -3.5859 -0.6174 15 7 1.7503 -3.5070 0.8239 16 6 1.4406 -4.5496 1.6199 17 8 1.3127 -4.3831 2.8173 18 6 1.2563 -5.8957 1.0370 19 6 2.3361 -6.7764 0.9517 20 6 2.1564 -8.0325 0.4107 21 6 0.9116 -8.4165 -0.0562 22 6 -0.1614 -7.5468 0.0211 23 6 0.0036 -6.2892 0.5644 24 6 -1.1662 -5.3429 0.6473 25 6 -2.4429 -6.0718 0.2235 26 6 -1.3175 -4.8437 2.0855 27 6 -0.9260 -4.1523 -0.2832 28 6 1.8457 -2.1029 1.2491 29 1 -0.3633 0.0881 1.0239 30 1 -0.3633 0.8426 -0.5883 31 1 -0.3633 -0.9308 -0.4356 32 1 -0.1664 3.1525 1.0795 33 1 2.2906 -1.9725 -2.0793 34 1 0.6544 -2.0625 -1.3451 35 1 3.1030 -3.8207 -0.7736 36 1 1.4200 -4.3360 -1.0954 37 1 3.3090 -6.4764 1.3119 38 1 2.9900 -8.7163 0.3475 39 1 0.7772 -9.3994 -0.4830 40 1 -1.1302 -7.8525 -0.3455 41 1 -2.6141 -6.9201 0.8864 42 1 -3.2891 -5.3875 0.2839 43 1 -2.3351 -6.4276 -0.8012 44 1 -0.4666 -4.2126 2.3426 45 1 -2.2379 -4.2667 2.1750 46 1 -1.3557 -5.6960 2.7638 47 1 -0.6038 -4.5137 -1.2598 48 1 -1.8500 -3.5845 -0.3926 49 1 -0.1532 -3.5107 0.1399 50 1 0.8902 -1.7736 1.6577 51 1 2.6271 -1.9956 2.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971753612.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:41:08 Heat of formation + Delta-G solvation = 18.468978 kcal Electronic energy + Delta-G solvation = -30388.623863 eV Core-core repulsion = 26674.686061 eV Total energy + Delta-G solvation = -3713.937802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.10111 -40.01933 -38.79309 -37.25176 -36.60918 -33.57666 -32.33055 -31.23700 -30.88528 -29.53552 -28.31733 -28.14699 -28.00362 -25.80696 -24.28925 -23.79118 -23.32798 -21.05620 -20.66092 -20.11617 -18.97720 -18.51700 -17.78050 -17.05642 -16.90882 -16.55667 -16.18108 -15.50174 -15.37675 -15.15699 -15.12379 -14.94760 -14.77093 -14.48424 -14.36589 -14.11473 -13.86070 -13.50392 -13.37599 -13.24902 -13.11038 -12.93977 -12.75643 -12.74259 -12.55387 -12.43041 -12.40239 -12.32358 -12.16678 -12.13525 -11.84782 -11.76997 -11.70300 -11.44726 -11.31385 -10.97009 -10.60502 -9.86193 -9.66617 -9.63130 -8.89908 -7.82239 -5.26561 0.19754 0.43589 1.45142 1.48570 1.50391 1.57078 1.92831 2.51831 2.76667 3.28704 3.43421 3.54457 3.59820 3.77115 3.82317 4.01404 4.06647 4.09667 4.22965 4.25652 4.30860 4.31765 4.42256 4.51858 4.54894 4.61915 4.68599 4.72853 4.78197 4.82504 4.85755 4.88118 4.95674 4.99875 5.02190 5.05268 5.13719 5.18493 5.20064 5.26328 5.30980 5.36789 5.40331 5.44024 5.48721 5.58148 5.61803 5.64633 5.75456 6.01459 6.28770 6.45885 7.01184 7.13497 7.84985 8.26670 9.20816 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.003372 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.316079 B = 8302.359497 C = 8786.242990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.602 5.602 3 C -0.263 4.263 4 H 0.082 0.918 5 C -0.057 4.057 6 N -0.943 5.943 7 Si 0.972 3.028 8 H -0.274 1.274 9 H -0.299 1.299 10 H -0.278 1.278 11 C 0.169 3.831 12 H 0.084 0.916 13 C -0.139 4.139 14 C 0.105 3.895 15 N -0.599 5.599 16 C 0.579 3.421 17 O -0.580 6.580 18 C -0.132 4.132 19 C -0.097 4.097 20 C -0.120 4.120 21 C -0.097 4.097 22 C -0.122 4.122 23 C -0.047 4.047 24 C -0.032 4.032 25 C -0.136 4.136 26 C -0.164 4.164 27 C -0.161 4.161 28 C 0.097 3.903 29 H -0.013 1.013 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.246 0.754 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.154 0.846 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.078 0.922 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.048 0.952 47 H 0.071 0.929 48 H 0.055 0.945 49 H 0.061 0.939 50 H 0.037 0.963 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.275 -24.109 -7.979 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.323 5.323 3 C -0.393 4.393 4 H 0.100 0.900 5 C -0.251 4.251 6 N -0.590 5.590 7 Si 0.801 3.199 8 H -0.200 1.200 9 H -0.225 1.225 10 H -0.204 1.204 11 C 0.060 3.940 12 H 0.102 0.898 13 C -0.179 4.179 14 C -0.017 4.017 15 N -0.330 5.330 16 C 0.370 3.630 17 O -0.462 6.462 18 C -0.135 4.135 19 C -0.116 4.116 20 C -0.138 4.138 21 C -0.114 4.114 22 C -0.140 4.140 23 C -0.048 4.048 24 C -0.032 4.032 25 C -0.193 4.193 26 C -0.221 4.221 27 C -0.218 4.218 28 C -0.028 4.028 29 H 0.006 0.994 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.119 0.881 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.143 0.857 38 H 0.172 0.828 39 H 0.177 0.823 40 H 0.171 0.829 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.080 0.920 50 H 0.056 0.944 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.094 -23.894 -7.276 24.977 hybrid contribution 0.120 1.720 0.868 1.930 sum 0.214 -22.174 -6.408 23.082 Atomic orbital electron populations 1.20483 0.82531 0.96060 0.96845 1.44144 1.02106 1.00947 1.85065 1.19673 0.95051 0.85169 1.39416 0.90018 1.25712 0.97880 1.01557 0.99936 1.70311 1.15595 1.26416 1.46666 0.85260 0.77283 0.79182 0.78211 1.20022 1.22543 1.20358 1.21557 0.96311 0.84637 0.91512 0.89782 1.23304 1.02648 0.92902 0.99028 1.22562 1.02093 0.98481 0.78539 1.48600 1.66875 1.06258 1.11308 1.18433 0.74709 0.84639 0.85198 1.90741 1.53073 1.85569 1.16779 1.19588 0.96199 0.93418 1.04287 1.21234 0.97267 0.94364 0.98718 1.21385 0.99004 0.95229 0.98198 1.21696 0.91968 1.00489 0.97287 1.21411 1.01017 0.92042 0.99505 1.19929 0.92303 0.95875 0.96656 1.19552 0.94056 0.94483 0.95090 1.21931 0.94836 1.00259 1.02253 1.22357 1.02514 1.01187 0.95999 1.22380 1.02715 0.97247 0.99479 1.22558 0.99843 0.80719 0.99704 0.99441 0.95202 0.95307 0.94429 0.88070 0.90966 0.89273 0.88886 0.85726 0.82757 0.82338 0.82864 0.91647 0.92298 0.90266 0.92582 0.92777 0.93279 0.90962 0.92579 0.92043 0.94411 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.21 7.80 127.77 1.00 10.21 16 2 N -0.60 -29.21 2.94 -695.59 -2.04 -31.25 16 3 C -0.26 -14.07 9.72 84.03 0.82 -13.25 16 4 H 0.08 4.13 7.77 -2.91 -0.02 4.10 16 5 C -0.06 -3.14 5.14 84.86 0.44 -2.70 16 6 N -0.94 -56.06 10.26 21.65 0.22 -55.83 16 7 Si 0.97 44.76 29.57 68.60 2.03 46.79 16 8 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 9 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 C 0.17 6.44 3.45 46.28 0.16 6.60 16 12 H 0.08 3.11 7.89 -2.39 -0.02 3.09 16 13 C -0.14 -4.02 6.29 32.09 0.20 -3.82 16 14 C 0.10 2.59 5.62 86.85 0.49 3.08 16 15 N -0.60 -19.35 1.82 -815.18 -1.48 -20.84 16 16 C 0.58 19.81 4.12 86.79 0.36 20.16 16 17 O -0.58 -24.92 15.22 -3.91 -0.06 -24.98 16 18 C -0.13 -3.51 4.30 -20.09 -0.09 -3.60 16 19 C -0.10 -2.08 9.79 22.53 0.22 -1.86 16 20 C -0.12 -1.78 10.03 22.23 0.22 -1.56 16 21 C -0.10 -1.25 10.04 22.33 0.22 -1.03 16 22 C -0.12 -1.98 8.99 22.23 0.20 -1.78 16 23 C -0.05 -1.08 4.73 -19.61 -0.09 -1.17 16 24 C -0.03 -0.77 0.75 -52.93 -0.04 -0.81 16 25 C -0.14 -2.38 7.12 71.98 0.51 -1.87 16 26 C -0.16 -5.05 7.80 71.98 0.56 -4.49 16 27 C -0.16 -4.12 6.86 71.98 0.49 -3.62 16 28 C 0.10 3.85 6.34 86.73 0.55 4.40 16 29 H -0.01 -0.72 7.51 -2.39 -0.02 -0.74 16 30 H 0.03 1.61 6.77 -2.39 -0.02 1.59 16 31 H 0.03 1.23 6.03 -2.39 -0.01 1.21 16 32 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 33 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.07 2.24 5.47 -2.39 -0.01 2.23 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.09 2.00 5.75 -2.39 -0.01 1.99 16 37 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 39 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 40 H 0.15 1.76 5.91 -2.91 -0.02 1.74 16 41 H 0.06 1.03 7.83 -2.38 -0.02 1.02 16 42 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 1.06 7.20 -2.39 -0.02 1.04 16 44 H 0.06 2.14 3.72 -2.38 -0.01 2.13 16 45 H 0.05 1.60 8.13 -2.39 -0.02 1.58 16 46 H 0.05 1.48 8.13 -2.39 -0.02 1.47 16 47 H 0.07 1.55 7.27 -2.38 -0.02 1.53 16 48 H 0.06 1.44 8.09 -2.39 -0.02 1.42 16 49 H 0.06 1.88 3.06 -2.39 -0.01 1.88 16 50 H 0.04 1.76 7.13 -2.38 -0.02 1.74 16 51 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -70.77 378.74 5.81 -64.96 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.92 Total: 18.24 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 6.22 Total: 2.91 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -3.31 Total: -107.92 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.06 Total: -24.98 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -70.77 5.81 -64.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971753612.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.433 kcal (2) G-P(sol) polarization free energy of solvation -70.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds