Wall clock time and date at job start Sat Apr 11 2020 02:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.36933 * 119.99923 * 2 1 4 4 H 1.07992 * 120.00178 * 204.63480 * 3 2 1 5 5 C 1.38814 * 120.00006 * 24.63476 * 3 2 1 6 6 N 1.31625 * 119.99990 * 6.96220 * 5 3 2 7 7 Si 1.86798 * 119.99897 * 186.96588 * 5 3 2 8 8 H 1.48498 * 109.47351 * 60.00036 * 7 5 3 9 9 H 1.48506 * 109.47001 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47074 * 299.99487 * 7 5 3 11 11 C 1.46494 * 119.99934 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.88610 * 182.42667 * 11 2 1 13 13 C 1.55159 * 111.03823 * 306.33339 * 11 2 1 14 14 C 1.54343 * 103.02138 * 153.39673 * 13 11 2 15 15 N 1.47026 * 107.25979 * 338.14090 * 14 13 11 16 16 C 1.34778 * 125.64340 * 178.85302 * 15 14 13 17 17 O 1.21554 * 120.00328 * 185.77219 * 16 15 14 18 18 C 1.47853 * 119.99998 * 5.76691 * 16 15 14 19 19 C 1.39570 * 120.14127 * 173.05988 * 18 16 15 20 20 C 1.37958 * 119.85462 * 180.02562 * 19 18 16 21 21 C 1.38361 * 120.14190 * 0.02562 * 20 19 18 22 22 C 1.50701 * 119.85461 * 180.02562 * 21 20 19 23 23 C 1.52996 * 109.47487 * 59.99598 * 22 21 20 24 24 C 1.53004 * 109.46798 * 299.99534 * 22 21 20 25 25 C 1.53008 * 109.47129 * 179.97438 * 22 21 20 26 26 C 1.38370 * 120.29175 * 0.27225 * 21 20 19 27 27 C 1.37953 * 120.13973 * 359.45488 * 26 21 20 28 28 C 1.47422 * 108.70872 * 358.58427 * 15 14 13 29 29 H 1.09004 * 109.46781 * 275.18114 * 1 2 3 30 30 H 1.08999 * 109.46849 * 35.18149 * 1 2 3 31 31 H 1.08998 * 109.46590 * 155.18246 * 1 2 3 32 32 H 0.96999 * 119.99393 * 179.97438 * 6 5 3 33 33 H 1.09006 * 110.71936 * 271.94917 * 13 11 2 34 34 H 1.08993 * 110.72152 * 35.22739 * 13 11 2 35 35 H 1.08990 * 109.98738 * 218.66525 * 14 13 11 36 36 H 1.09001 * 109.77765 * 97.48964 * 14 13 11 37 37 H 1.08009 * 120.07738 * 0.04416 * 19 18 16 38 38 H 1.07996 * 119.93452 * 180.02562 * 20 19 18 39 39 H 1.09003 * 109.46575 * 60.00310 * 23 22 21 40 40 H 1.09000 * 109.47160 * 300.00585 * 23 22 21 41 41 H 1.09003 * 109.47192 * 180.02562 * 23 22 21 42 42 H 1.09003 * 109.46959 * 180.02562 * 24 22 21 43 43 H 1.09004 * 109.47202 * 300.00220 * 24 22 21 44 44 H 1.09000 * 109.46735 * 60.00097 * 24 22 21 45 45 H 1.08993 * 109.46894 * 299.99963 * 25 22 21 46 46 H 1.09003 * 109.46496 * 59.99898 * 25 22 21 47 47 H 1.08990 * 109.46969 * 179.97438 * 25 22 21 48 48 H 1.08001 * 119.92323 * 179.70567 * 26 21 20 49 49 H 1.08005 * 120.06888 * 180.25635 * 27 26 21 50 50 H 1.08993 * 110.36826 * 143.19751 * 28 15 14 51 51 H 1.08994 * 110.36493 * 265.41368 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1560 1.2285 -0.3898 5 6 1.5504 2.3333 0.5011 6 7 0.3809 2.2570 1.1001 7 14 2.4037 3.9857 0.3252 8 1 2.6075 4.2869 -1.1145 9 1 1.5623 5.0450 0.9378 10 1 3.7194 3.9390 1.0123 11 6 2.1976 -1.2687 0.0006 12 1 3.2730 -1.0965 0.0436 13 6 1.7330 -2.1795 1.1676 14 6 2.0342 -3.5991 0.6419 15 7 2.1001 -3.5163 -0.8246 16 6 2.3654 -4.5418 -1.6579 17 8 2.4984 -4.3384 -2.8489 18 6 2.4947 -5.9143 -1.1235 19 6 2.6247 -6.9965 -1.9953 20 6 2.7445 -8.2747 -1.4902 21 6 2.7352 -8.4851 -0.1227 22 6 2.8670 -9.8840 0.4220 23 6 4.1956 -10.4874 -0.0379 24 6 1.7109 -10.7431 -0.0940 25 6 2.8288 -9.8417 1.9510 26 6 2.6004 -7.4172 0.7468 27 6 2.4855 -6.1335 0.2548 28 6 1.8217 -2.1274 -1.2328 29 1 -0.3633 0.0928 1.0235 30 1 -0.3633 0.8399 -0.5921 31 1 -0.3632 -0.9328 -0.4313 32 1 -0.0377 3.0588 1.4505 33 1 2.3059 -1.9709 2.0712 34 1 0.6653 -2.0583 1.3499 35 1 1.2393 -4.2829 0.9393 36 1 2.9898 -3.9437 1.0370 37 1 2.6320 -6.8336 -3.0630 38 1 2.8456 -9.1129 -2.1635 39 1 5.0192 -9.8752 0.3298 40 1 4.2233 -10.5174 -1.1271 41 1 4.2907 -11.4994 0.3558 42 1 1.8059 -11.7549 0.3004 43 1 0.7643 -10.3133 0.2337 44 1 1.7386 -10.7732 -1.1832 45 1 3.6525 -9.2297 2.3182 46 1 1.8823 -9.4116 2.2789 47 1 2.9236 -10.8534 2.3449 48 1 2.5892 -7.5887 1.8131 49 1 2.3845 -5.3004 0.9347 50 1 2.4383 -1.8526 -2.0885 51 1 0.7654 -2.0072 -1.4731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972787492.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:41:32 Heat of formation + Delta-G solvation = 31.197647 kcal Electronic energy + Delta-G solvation = -28386.948134 eV Core-core repulsion = 24673.562289 eV Total energy + Delta-G solvation = -3713.385846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.61410 -39.34731 -37.48293 -36.29773 -34.91234 -31.98334 -31.22407 -30.42958 -29.81155 -27.99396 -27.60146 -27.51702 -26.07297 -24.78030 -23.05258 -22.69769 -21.94966 -19.86460 -19.50450 -19.34061 -17.29263 -17.07288 -16.35060 -15.92390 -15.55354 -14.94655 -14.74418 -14.63207 -14.56238 -14.14318 -13.91580 -13.73437 -13.44639 -13.34685 -13.08118 -12.98439 -12.58373 -12.47958 -12.42598 -12.23729 -12.15288 -12.03247 -11.94906 -11.75407 -11.29129 -11.22595 -11.01245 -10.89465 -10.84462 -10.55660 -10.48346 -10.39243 -10.28641 -9.91638 -9.86842 -9.68836 -9.09106 -8.87387 -8.60497 -8.35199 -6.81216 -5.77624 -3.27509 0.79478 1.26492 2.91515 3.16626 3.36847 3.42009 3.43358 3.80279 4.21978 4.38559 4.44469 4.58935 4.63777 4.78736 4.85070 4.92124 4.97155 5.19026 5.20783 5.22919 5.26205 5.32387 5.39988 5.40516 5.43945 5.51894 5.52523 5.53959 5.59859 5.68830 5.71348 5.81036 5.86370 5.87163 5.90477 5.94089 5.99118 6.23442 6.26091 6.28448 6.34609 6.40535 6.52623 6.62814 6.77032 6.78195 6.85658 7.36334 7.69899 7.74480 7.77085 8.32094 8.36279 9.18111 9.78854 10.27938 11.26530 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.027806 B = 0.002261 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.732949 B =12382.160064 C =12796.516690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.586 5.586 3 C -0.260 4.260 4 H 0.069 0.931 5 C 0.006 3.994 6 N -0.908 5.908 7 Si 0.909 3.091 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.174 3.826 12 H 0.079 0.921 13 C -0.154 4.154 14 C 0.092 3.908 15 N -0.606 5.606 16 C 0.567 3.433 17 O -0.546 6.546 18 C -0.130 4.130 19 C -0.060 4.060 20 C -0.128 4.128 21 C -0.052 4.052 22 C -0.033 4.033 23 C -0.139 4.139 24 C -0.139 4.139 25 C -0.145 4.145 26 C -0.131 4.131 27 C -0.121 4.121 28 C 0.084 3.916 29 H 0.033 0.967 30 H 0.045 0.955 31 H -0.001 1.001 32 H 0.254 0.746 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.130 0.870 49 H 0.163 0.837 50 H 0.074 0.926 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.635 -25.789 2.002 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.306 5.306 3 C -0.390 4.390 4 H 0.087 0.913 5 C -0.193 4.193 6 N -0.552 5.552 7 Si 0.738 3.262 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.194 4.194 14 C -0.030 4.030 15 N -0.339 5.339 16 C 0.357 3.643 17 O -0.425 6.425 18 C -0.133 4.133 19 C -0.079 4.079 20 C -0.146 4.146 21 C -0.052 4.052 22 C -0.033 4.033 23 C -0.196 4.196 24 C -0.196 4.196 25 C -0.202 4.202 26 C -0.149 4.149 27 C -0.138 4.138 28 C -0.040 4.040 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.017 0.983 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.148 0.852 49 H 0.180 0.820 50 H 0.092 0.908 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.582 -25.525 1.395 25.813 hybrid contribution 0.308 0.889 -0.001 0.940 sum 3.889 -24.636 1.394 24.980 Atomic orbital electron populations 1.20846 0.82338 0.95533 0.99637 1.43793 1.01916 0.99790 1.85117 1.19181 0.99265 0.85752 1.34764 0.91322 1.25104 0.97392 0.98765 0.98027 1.70044 1.16582 1.27767 1.40808 0.86279 0.78705 0.83351 0.77835 1.20956 1.21588 1.20857 1.21405 0.96452 0.85849 0.89974 0.90307 1.23307 1.03056 0.92432 1.00633 1.22530 1.00460 0.99421 0.80629 1.48324 1.68728 1.09788 1.07027 1.17987 0.77006 0.83848 0.85451 1.90751 1.51558 1.84738 1.15416 1.19945 1.05895 0.93308 0.94147 1.21239 0.95152 0.91284 1.00223 1.20903 1.02218 0.96645 0.94791 1.20044 0.96987 0.94722 0.93454 1.19565 0.96335 0.91634 0.95767 1.21894 0.95836 1.00435 1.01431 1.21896 0.97459 0.99025 1.01219 1.21977 1.02233 1.02032 0.93987 1.21185 1.01731 0.91918 1.00076 1.22876 0.96334 0.99125 0.95498 1.23060 1.01298 0.79027 1.00622 0.94840 0.93627 0.98265 0.93589 0.90292 0.90356 0.91046 0.90890 0.84915 0.85749 0.92365 0.92341 0.92278 0.92277 0.92366 0.92336 0.92090 0.92087 0.92324 0.85173 0.82000 0.90751 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.82 7.58 59.85 0.45 4.28 16 2 N -0.59 -14.14 2.96 -171.03 -0.51 -14.64 16 3 C -0.26 -6.96 9.61 -15.06 -0.14 -7.10 16 4 H 0.07 1.80 7.84 -52.49 -0.41 1.39 16 5 C 0.01 0.16 5.22 -17.43 -0.09 0.06 16 6 N -0.91 -25.71 10.49 55.49 0.58 -25.13 16 7 Si 0.91 21.51 29.56 -169.99 -5.02 16.48 16 8 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 C 0.17 3.42 3.54 -65.78 -0.23 3.19 16 12 H 0.08 1.57 7.96 -51.93 -0.41 1.16 16 13 C -0.15 -2.48 6.51 -24.89 -0.16 -2.65 16 14 C 0.09 1.23 4.87 -3.05 -0.01 1.22 16 15 N -0.61 -9.94 3.33 -175.81 -0.58 -10.53 16 16 C 0.57 9.71 7.81 -12.33 -0.10 9.62 16 17 O -0.55 -11.13 16.60 5.32 0.09 -11.04 16 18 C -0.13 -1.80 5.87 -104.97 -0.62 -2.42 16 19 C -0.06 -0.75 9.59 -39.19 -0.38 -1.13 16 20 C -0.13 -1.28 8.69 -39.64 -0.34 -1.62 16 21 C -0.05 -0.48 4.77 -104.53 -0.50 -0.98 16 22 C -0.03 -0.23 0.85 -155.66 -0.13 -0.36 16 23 C -0.14 -0.88 8.28 37.16 0.31 -0.58 16 24 C -0.14 -0.88 8.29 37.16 0.31 -0.58 16 25 C -0.15 -0.88 7.13 37.16 0.26 -0.62 16 26 C -0.13 -1.27 8.96 -39.64 -0.36 -1.62 16 27 C -0.12 -1.38 8.62 -39.19 -0.34 -1.71 16 28 C 0.08 1.57 6.49 -2.53 -0.02 1.56 16 29 H 0.03 0.85 7.33 -51.93 -0.38 0.47 16 30 H 0.04 1.18 7.29 -51.93 -0.38 0.81 16 31 H 0.00 -0.02 6.34 -51.93 -0.33 -0.35 16 32 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.34 7.09 -51.93 -0.37 0.97 16 35 H 0.07 0.83 6.72 -51.93 -0.35 0.48 16 36 H 0.07 0.83 6.76 -51.93 -0.35 0.48 16 37 H 0.13 1.68 7.67 -52.48 -0.40 1.28 16 38 H 0.12 0.99 7.08 -52.49 -0.37 0.62 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.37 7.38 -51.93 -0.38 -0.02 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.37 7.37 -51.93 -0.38 -0.02 16 45 H 0.06 0.37 7.52 -51.93 -0.39 -0.02 16 46 H 0.06 0.37 7.49 -51.93 -0.39 -0.02 16 47 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.13 0.99 5.87 -52.49 -0.31 0.68 16 49 H 0.16 1.67 2.74 -57.91 -0.16 1.51 16 50 H 0.07 1.49 7.98 -51.93 -0.41 1.07 16 51 H 0.07 1.36 6.34 -51.93 -0.33 1.04 16 LS Contribution 388.85 15.07 5.86 5.86 Total: -1.00 -30.96 388.85 -9.85 -40.81 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -8.18 Total: -0.36 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -2.08 Total: -1.44 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.51 Total: -50.30 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.96 -9.85 -40.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972787492.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.008 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds