Wall clock time and date at job start Sat Apr 11 2020 02:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36943 * 119.99724 * 2 1 4 4 H 1.08000 * 119.99720 * 204.89819 * 3 2 1 5 5 C 1.38813 * 119.99718 * 24.90588 * 3 2 1 6 6 N 1.31615 * 120.00173 * 5.55004 * 5 3 2 7 7 Si 1.86798 * 119.99736 * 185.54388 * 5 3 2 8 8 H 1.48502 * 109.46980 * 89.99996 * 7 5 3 9 9 H 1.48492 * 109.47193 * 210.00163 * 7 5 3 10 10 H 1.48498 * 109.47354 * 330.00574 * 7 5 3 11 11 C 1.46495 * 120.00348 * 180.02562 * 2 1 3 12 12 H 1.09003 * 110.88944 * 183.87803 * 11 2 1 13 13 C 1.55158 * 111.00696 * 59.99708 * 11 2 1 14 14 C 1.54328 * 102.94236 * 206.38882 * 13 11 2 15 15 N 1.47021 * 107.27001 * 22.19152 * 14 13 11 16 16 C 1.34780 * 125.64918 * 181.02435 * 15 14 13 17 17 O 1.21551 * 120.00243 * 185.12128 * 16 15 14 18 18 C 1.47852 * 119.99617 * 5.11414 * 16 15 14 19 19 C 1.39575 * 120.14088 * 171.90262 * 18 16 15 20 20 C 1.37959 * 119.85035 * 179.72409 * 19 18 16 21 21 C 1.38353 * 120.14458 * 0.27268 * 20 19 18 22 22 C 1.50704 * 119.85472 * 179.97438 * 21 20 19 23 23 C 1.53008 * 109.46626 * 60.00352 * 22 21 20 24 24 C 1.52996 * 109.47430 * 179.97438 * 22 21 20 25 25 C 1.52995 * 109.47274 * 300.00600 * 22 21 20 26 26 C 1.38355 * 120.29576 * 0.02562 * 21 20 19 27 27 C 1.37959 * 120.14537 * 359.97438 * 26 21 20 28 28 C 1.47424 * 108.70429 * 1.28716 * 15 14 13 29 29 H 1.09000 * 109.47442 * 275.04221 * 1 2 3 30 30 H 1.08997 * 109.47357 * 35.04579 * 1 2 3 31 31 H 1.09004 * 109.47322 * 155.04731 * 1 2 3 32 32 H 0.97001 * 119.99607 * 180.02562 * 6 5 3 33 33 H 1.08991 * 110.72313 * 88.02615 * 13 11 2 34 34 H 1.09005 * 110.86856 * 324.81658 * 13 11 2 35 35 H 1.08995 * 109.88238 * 262.77430 * 14 13 11 36 36 H 1.09000 * 109.88074 * 141.60468 * 14 13 11 37 37 H 1.08005 * 120.07440 * 359.97438 * 19 18 16 38 38 H 1.08002 * 119.92935 * 180.29997 * 20 19 18 39 39 H 1.08992 * 109.47409 * 60.00181 * 23 22 21 40 40 H 1.09005 * 109.46895 * 180.02562 * 23 22 21 41 41 H 1.09002 * 109.46932 * 299.99443 * 23 22 21 42 42 H 1.09003 * 109.46995 * 60.00460 * 24 22 21 43 43 H 1.08996 * 109.47216 * 180.02562 * 24 22 21 44 44 H 1.09006 * 109.47158 * 300.00435 * 24 22 21 45 45 H 1.09002 * 109.47798 * 59.99630 * 25 22 21 46 46 H 1.08996 * 109.47360 * 179.97438 * 25 22 21 47 47 H 1.09003 * 109.46975 * 299.99432 * 25 22 21 48 48 H 1.08004 * 119.93050 * 179.97438 * 26 21 20 49 49 H 1.07994 * 120.07859 * 180.02562 * 27 26 21 50 50 H 1.09004 * 110.36425 * 94.48445 * 28 15 14 51 51 H 1.09000 * 110.36456 * 216.80217 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1543 1.2295 -0.3938 5 6 1.5523 2.3322 0.5063 6 7 0.3725 2.2587 1.0851 7 14 2.4229 3.9789 0.3661 8 1 2.0337 4.6379 -0.9065 9 1 2.0349 4.8429 1.5098 10 1 3.8923 3.7650 0.3834 11 6 2.1975 -1.2686 -0.0006 12 1 3.2717 -1.0972 0.0684 13 6 1.8484 -2.1119 -1.2553 14 6 2.1074 -3.5581 -0.7828 15 7 2.0281 -3.5585 0.6852 16 6 2.2157 -4.6294 1.4818 17 8 2.0342 -4.5349 2.6800 18 6 2.6420 -5.9192 0.8981 19 6 3.0001 -6.9809 1.7303 20 6 3.3916 -8.1835 1.1793 21 6 3.4351 -8.3367 -0.1951 22 6 3.8642 -9.6531 -0.7900 23 6 2.9141 -10.7577 -0.3229 24 6 3.8254 -9.5597 -2.3167 25 6 5.2880 -9.9787 -0.3345 26 6 3.0874 -7.2863 -1.0257 27 6 2.6941 -6.0783 -0.4876 28 6 1.7030 -2.1948 1.1415 29 1 -0.3634 0.0903 1.0237 30 1 -0.3634 0.8413 -0.5901 31 1 -0.3634 -0.9318 -0.4336 32 1 -0.0450 3.0597 1.4386 33 1 2.5038 -1.8549 -2.0873 34 1 0.8031 -1.9788 -1.5341 35 1 3.0991 -3.8799 -1.1005 36 1 1.3495 -4.2241 -1.1952 37 1 2.9669 -6.8625 2.8033 38 1 3.6642 -9.0075 1.8221 39 1 1.8998 -10.5258 -0.6474 40 1 3.2247 -11.7100 -0.7529 41 1 2.9414 -10.8244 0.7647 42 1 4.5020 -8.7727 -2.6498 43 1 4.1354 -10.5120 -2.7469 44 1 2.8108 -9.3279 -2.6409 45 1 5.3153 -10.0454 0.7532 46 1 5.5983 -10.9310 -0.7644 47 1 5.9649 -9.1918 -0.6673 48 1 3.1239 -7.4122 -2.0978 49 1 2.4226 -5.2593 -1.1370 50 1 0.6273 -2.0878 1.2809 51 1 2.2308 -1.9689 2.0680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972787493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:41:34 Heat of formation + Delta-G solvation = 30.940452 kcal Electronic energy + Delta-G solvation = -28404.152118 eV Core-core repulsion = 24690.755120 eV Total energy + Delta-G solvation = -3713.396998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.59837 -39.33091 -37.46837 -36.28694 -34.90657 -31.97997 -31.22233 -30.42467 -29.79654 -27.98097 -27.59932 -27.50640 -26.07900 -24.76931 -23.04481 -22.68860 -21.95342 -19.85188 -19.50036 -19.32736 -17.25939 -17.07924 -16.34276 -15.89671 -15.57640 -15.00184 -14.71895 -14.60948 -14.58444 -14.08004 -13.90649 -13.70305 -13.48511 -13.29846 -13.05254 -12.99610 -12.59566 -12.47380 -12.34273 -12.23279 -12.17089 -12.03735 -11.98544 -11.75731 -11.28936 -11.27460 -10.98219 -10.88332 -10.86287 -10.59259 -10.47165 -10.38251 -10.30260 -9.89252 -9.85459 -9.66778 -9.08598 -8.86279 -8.60647 -8.32230 -6.80865 -5.77630 -3.28111 0.80835 1.27092 2.93819 3.19069 3.35893 3.42139 3.43576 3.81587 4.22264 4.38702 4.43862 4.60523 4.63822 4.78541 4.85635 4.92193 4.96149 5.17854 5.19549 5.24264 5.26347 5.31181 5.39480 5.40519 5.40935 5.52020 5.53007 5.57588 5.60291 5.69850 5.71833 5.82324 5.85695 5.87965 5.89716 5.94260 5.98465 6.24208 6.27440 6.28874 6.35326 6.41055 6.52257 6.62454 6.76765 6.79582 6.86184 7.36901 7.71348 7.77391 7.78011 8.33706 8.38247 9.18119 9.78680 10.28057 11.26363 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.027515 B = 0.002272 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.369692 B =12321.204118 C =12656.848612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.586 5.586 3 C -0.261 4.261 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.906 5.906 7 Si 0.909 3.091 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.174 3.826 12 H 0.079 0.921 13 C -0.157 4.157 14 C 0.094 3.906 15 N -0.607 5.607 16 C 0.566 3.434 17 O -0.544 6.544 18 C -0.129 4.129 19 C -0.060 4.060 20 C -0.127 4.127 21 C -0.052 4.052 22 C -0.033 4.033 23 C -0.139 4.139 24 C -0.145 4.145 25 C -0.139 4.139 26 C -0.131 4.131 27 C -0.121 4.121 28 C 0.088 3.912 29 H 0.032 0.968 30 H 0.047 0.953 31 H -0.001 1.001 32 H 0.254 0.746 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.130 0.870 49 H 0.162 0.838 50 H 0.070 0.930 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.198 -25.028 -7.349 26.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.306 5.306 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.550 5.550 7 Si 0.739 3.261 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.198 4.198 14 C -0.029 4.029 15 N -0.340 5.340 16 C 0.355 3.645 17 O -0.423 6.423 18 C -0.132 4.132 19 C -0.079 4.079 20 C -0.145 4.145 21 C -0.053 4.053 22 C -0.033 4.033 23 C -0.196 4.196 24 C -0.202 4.202 25 C -0.196 4.196 26 C -0.149 4.149 27 C -0.138 4.138 28 C -0.036 4.036 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.017 0.983 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.148 0.852 49 H 0.179 0.821 50 H 0.088 0.912 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.980 -24.827 -6.578 26.371 hybrid contribution 0.317 0.889 0.042 0.945 sum 6.297 -23.938 -6.535 25.601 Atomic orbital electron populations 1.20844 0.82306 0.95505 0.99657 1.43835 1.01956 0.99797 1.85024 1.19218 0.99486 0.85701 1.34615 0.91217 1.25159 0.97313 0.98903 0.97928 1.70054 1.15908 1.27773 1.41277 0.86193 0.79113 0.83655 0.77178 1.21413 1.21619 1.20415 1.21500 0.96393 0.85734 0.90085 0.90307 1.23314 1.03027 0.92666 1.00759 1.22496 1.00546 0.99006 0.80831 1.48384 1.68716 1.09754 1.07111 1.18000 0.77794 0.82876 0.85789 1.90760 1.52518 1.84306 1.14708 1.19964 1.04618 0.94534 0.94076 1.21248 0.94794 0.91486 1.00381 1.20904 1.01736 0.97381 0.94497 1.20032 0.96857 0.94888 0.93488 1.19562 0.95933 0.92198 0.95591 1.21896 0.99031 0.97264 1.01411 1.21976 1.02186 1.02034 0.94014 1.21893 0.94774 1.01486 1.01450 1.21173 1.00951 0.92666 1.00132 1.22839 0.96776 0.99146 0.95073 1.23156 1.01136 0.79043 1.00270 0.94985 0.93462 0.98299 0.93567 0.90439 0.90373 0.90841 0.91167 0.84899 0.85749 0.92380 0.92288 0.92333 0.92086 0.92333 0.92118 0.92331 0.92287 0.92353 0.85206 0.82104 0.91197 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 7.53 59.84 0.45 4.30 16 2 N -0.59 -14.13 2.96 -170.90 -0.51 -14.64 16 3 C -0.26 -6.95 9.62 -15.06 -0.14 -7.09 16 4 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 5 C 0.01 0.16 5.24 -17.43 -0.09 0.07 16 6 N -0.91 -25.99 10.45 55.49 0.58 -25.41 16 7 Si 0.91 21.51 29.56 -169.99 -5.02 16.48 16 8 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 C 0.17 3.41 3.55 -65.66 -0.23 3.18 16 12 H 0.08 1.57 7.96 -51.93 -0.41 1.15 16 13 C -0.16 -2.41 6.49 -24.89 -0.16 -2.57 16 14 C 0.09 1.23 4.87 -3.06 -0.01 1.22 16 15 N -0.61 -10.14 3.32 -174.97 -0.58 -10.73 16 16 C 0.57 9.91 7.81 -12.32 -0.10 9.81 16 17 O -0.54 -11.44 16.67 5.32 0.09 -11.35 16 18 C -0.13 -1.81 5.87 -104.96 -0.62 -2.42 16 19 C -0.06 -0.77 9.59 -39.19 -0.38 -1.14 16 20 C -0.13 -1.29 8.69 -39.64 -0.34 -1.63 16 21 C -0.05 -0.49 4.77 -104.53 -0.50 -0.98 16 22 C -0.03 -0.23 0.85 -155.66 -0.13 -0.36 16 23 C -0.14 -0.89 8.28 37.16 0.31 -0.58 16 24 C -0.14 -0.87 7.13 37.16 0.26 -0.61 16 25 C -0.14 -0.89 8.29 37.15 0.31 -0.58 16 26 C -0.13 -1.26 8.96 -39.64 -0.36 -1.62 16 27 C -0.12 -1.37 8.60 -39.18 -0.34 -1.71 16 28 C 0.09 1.72 6.44 -2.41 -0.02 1.70 16 29 H 0.03 0.84 7.34 -51.93 -0.38 0.46 16 30 H 0.05 1.22 7.26 -51.93 -0.38 0.84 16 31 H 0.00 -0.03 6.37 -51.93 -0.33 -0.36 16 32 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.25 6.47 -51.93 -0.34 0.91 16 35 H 0.07 0.82 6.67 -51.93 -0.35 0.48 16 36 H 0.07 0.79 6.80 -51.93 -0.35 0.44 16 37 H 0.13 1.72 7.67 -52.48 -0.40 1.32 16 38 H 0.12 1.01 7.08 -52.49 -0.37 0.64 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.37 7.37 -51.93 -0.38 -0.01 16 42 H 0.06 0.36 7.50 -51.93 -0.39 -0.03 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.36 7.51 -51.93 -0.39 -0.03 16 45 H 0.06 0.37 7.38 -51.93 -0.38 -0.01 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.13 0.97 5.87 -52.48 -0.31 0.66 16 49 H 0.16 1.63 2.78 -57.01 -0.16 1.47 16 50 H 0.07 1.46 6.97 -51.93 -0.36 1.10 16 51 H 0.07 1.57 8.09 -51.93 -0.42 1.15 16 LS Contribution 388.94 15.07 5.86 5.86 Total: -1.00 -31.33 388.94 -9.86 -41.18 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -8.19 Total: -0.38 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -2.09 Total: -1.02 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.51 Total: -50.77 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.33 -9.86 -41.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972787493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.124 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds