Wall clock time and date at job start Sat Apr 11 2020 02:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47062 * 2 1 4 4 C 1.53000 * 109.46774 * 120.00082 * 2 1 3 5 5 C 1.50703 * 109.47244 * 65.00304 * 4 2 1 6 6 C 1.37979 * 120.07069 * 260.78618 * 5 4 2 7 7 C 1.38334 * 120.14492 * 180.02562 * 6 5 4 8 8 C 1.38383 * 120.29104 * 0.02562 * 7 6 5 9 9 C 1.37929 * 120.14729 * 359.97438 * 8 7 6 10 10 C 1.39550 * 120.07566 * 80.80795 * 5 4 2 11 11 C 1.47849 * 120.14680 * 0.02562 * 10 5 4 12 12 O 1.21553 * 119.99417 * 354.47512 * 11 10 5 13 13 N 1.34777 * 120.00350 * 174.47611 * 11 10 5 14 14 C 1.46498 * 119.99910 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.46846 * 180.02562 * 14 13 11 16 16 H 1.09005 * 110.64045 * 305.69970 * 15 14 13 17 17 C 1.55161 * 110.71927 * 182.56225 * 15 14 13 18 18 C 1.54912 * 101.57909 * 206.13323 * 17 15 14 19 19 N 1.47424 * 104.83293 * 37.00933 * 18 17 15 20 20 C 1.36935 * 125.65231 * 155.90714 * 19 18 17 21 21 H 1.08004 * 120.00648 * 179.97438 * 20 19 18 22 22 C 1.38820 * 119.99787 * 359.96956 * 20 19 18 23 23 N 1.31621 * 119.99710 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00030 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46993 * 60.00211 * 24 22 20 26 26 H 1.48497 * 109.47114 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47335 * 300.00158 * 24 22 20 28 28 C 1.47321 * 108.73790 * 335.71351 * 19 18 17 29 29 H 1.08999 * 109.46707 * 59.99998 * 1 2 3 30 30 H 1.09003 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47224 * 300.00199 * 1 2 3 32 32 H 1.08998 * 109.47224 * 239.99801 * 2 1 3 33 33 H 1.09006 * 109.46790 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47361 * 299.99602 * 3 2 1 35 35 H 1.09003 * 109.47162 * 60.00295 * 3 2 1 36 36 H 1.08995 * 109.47270 * 305.00179 * 4 2 1 37 37 H 1.09001 * 109.46924 * 184.99689 * 4 2 1 38 38 H 1.07999 * 119.92997 * 0.02562 * 6 5 4 39 39 H 1.08006 * 119.85877 * 180.02562 * 7 6 5 40 40 H 1.08007 * 119.92278 * 180.27350 * 8 7 6 41 41 H 1.08000 * 120.07416 * 180.02562 * 9 8 7 42 42 H 0.97000 * 119.99961 * 359.97438 * 13 11 10 43 43 H 1.08998 * 109.47185 * 300.00181 * 14 13 11 44 44 H 1.09001 * 109.46977 * 60.00095 * 14 13 11 45 45 H 1.08999 * 110.99987 * 324.20552 * 17 15 14 46 46 H 1.08990 * 111.00590 * 88.02458 * 17 15 14 47 47 H 1.09001 * 110.36807 * 155.84365 * 18 17 15 48 48 H 1.09001 * 110.37004 * 278.05999 * 18 17 15 49 49 H 0.97003 * 119.99699 * 180.02562 * 23 22 20 50 50 H 1.09005 * 110.06352 * 241.87955 * 28 19 18 51 51 H 1.08992 * 109.85347 * 120.61262 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 -2.1734 1.1889 6 6 0.5367 -2.6167 1.8868 7 6 0.1697 -3.9494 1.8329 8 6 0.9069 -4.8464 1.0801 9 6 2.0133 -4.4163 0.3777 10 6 2.3887 -3.0727 0.4273 11 6 3.5741 -2.6049 -0.3223 12 8 3.8417 -1.4197 -0.3581 13 7 4.3580 -3.4925 -0.9659 14 6 5.5322 -3.0288 -1.7091 15 6 6.2418 -4.2278 -2.3413 16 1 6.4757 -4.9780 -1.5858 17 6 7.5276 -3.7763 -3.0831 18 6 7.6801 -4.8911 -4.1478 19 7 6.3011 -5.2111 -4.5594 20 6 5.9339 -5.7671 -5.7557 21 1 4.8923 -5.9642 -5.9626 22 6 6.9004 -6.0774 -6.7026 23 7 8.1697 -5.8377 -6.4502 24 14 6.3994 -6.8353 -8.3348 25 1 5.4816 -5.9114 -9.0485 26 1 7.6090 -7.0690 -9.1640 27 1 5.7095 -8.1271 -8.0897 28 6 5.3832 -4.8381 -3.4691 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6053 -0.2618 2.1369 37 1 3.1263 -0.6444 1.2952 38 1 -0.0427 -1.9217 2.4765 39 1 -0.6961 -4.2913 2.3807 40 1 0.6124 -5.8848 1.0386 41 1 2.5875 -5.1174 -0.2098 42 1 4.1446 -4.4383 -0.9371 43 1 5.2175 -2.3390 -2.4922 44 1 6.2148 -2.5194 -1.0289 45 1 7.3858 -2.8034 -3.5536 46 1 8.3830 -3.7605 -2.4079 47 1 8.2551 -4.5267 -4.9991 48 1 8.1610 -5.7675 -3.7133 49 1 8.8450 -6.0542 -7.1121 50 1 4.8613 -5.7214 -3.1010 51 1 4.6635 -4.1018 -3.8267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029009174.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:49 Heat of formation + Delta-G solvation = -2.190097 kcal Electronic energy + Delta-G solvation = -28427.074433 eV Core-core repulsion = 24712.240786 eV Total energy + Delta-G solvation = -3714.833647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.61858 -38.63379 -37.52648 -36.33516 -34.58981 -32.63893 -31.63149 -31.40986 -29.70157 -28.24526 -27.18780 -26.68034 -25.55195 -24.13472 -23.17988 -21.78243 -20.82104 -20.11734 -19.90133 -19.51996 -17.83854 -16.83801 -16.20161 -16.00714 -15.55337 -15.34619 -15.02155 -14.77853 -14.63753 -14.46052 -14.10327 -13.73997 -13.67514 -13.29773 -12.95343 -12.73482 -12.52905 -12.51444 -12.25497 -12.05104 -11.78015 -11.74702 -11.69983 -11.53701 -11.44409 -10.96788 -10.94556 -10.80646 -10.79257 -10.56581 -10.37005 -10.14967 -10.02303 -9.85585 -9.62407 -9.44822 -9.22355 -8.99195 -8.78460 -8.65551 -6.84588 -5.66138 -3.07823 0.69875 1.13149 2.83946 3.22652 3.39916 3.44079 3.45435 3.68454 4.47706 4.52592 4.58032 4.60960 4.77789 4.93198 4.99335 5.06970 5.14346 5.17537 5.25008 5.25821 5.39890 5.47188 5.52233 5.56025 5.65961 5.68558 5.70494 5.73121 5.81261 5.87765 5.91546 5.96377 6.06121 6.07076 6.10323 6.15728 6.20315 6.26631 6.33439 6.34675 6.51031 6.52734 6.54827 6.57947 6.67432 6.72422 6.89677 7.50302 7.56131 7.61086 7.84819 8.26000 8.35621 9.21337 9.82078 10.47057 11.37793 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.002530 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.508641 B =11063.235275 C =11522.209798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 C -0.140 4.140 4 C -0.080 4.080 5 C -0.017 4.017 6 C -0.130 4.130 7 C -0.095 4.095 8 C -0.134 4.134 9 C -0.083 4.083 10 C -0.135 4.135 11 C 0.552 3.448 12 O -0.529 6.529 13 N -0.721 5.721 14 C 0.134 3.866 15 C -0.115 4.115 16 H 0.075 0.925 17 C -0.135 4.135 18 C 0.152 3.848 19 N -0.604 5.604 20 C -0.224 4.224 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.923 5.923 24 Si 0.915 3.085 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.286 1.286 28 C 0.141 3.859 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.399 0.601 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.107 0.893 48 H 0.011 0.989 49 H 0.253 0.747 50 H 0.017 0.983 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.950 7.402 18.985 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.098 4.098 3 C -0.198 4.198 4 C -0.117 4.117 5 C -0.018 4.018 6 C -0.148 4.148 7 C -0.113 4.113 8 C -0.152 4.152 9 C -0.102 4.102 10 C -0.138 4.138 11 C 0.340 3.660 12 O -0.408 6.408 13 N -0.372 5.372 14 C 0.011 3.989 15 C -0.135 4.135 16 H 0.093 0.907 17 C -0.174 4.174 18 C 0.027 3.973 19 N -0.331 5.331 20 C -0.352 4.352 21 H 0.094 0.906 22 C -0.207 4.207 23 N -0.571 5.571 24 Si 0.745 3.255 25 H -0.211 1.211 26 H -0.215 1.215 27 H -0.212 1.212 28 C 0.015 3.985 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.234 0.766 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.125 0.875 48 H 0.029 0.971 49 H 0.063 0.937 50 H 0.035 0.965 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -13.625 8.176 18.724 24.558 hybrid contribution -0.456 -1.183 -0.792 1.495 sum -14.081 6.993 17.932 23.848 Atomic orbital electron populations 1.21954 0.96165 1.01489 1.01201 1.20939 0.94319 0.96035 0.98531 1.21753 1.01609 0.95596 1.00818 1.20882 1.03582 0.89472 0.97776 1.20031 0.92857 0.95865 0.93052 1.21052 0.97069 0.95927 1.00732 1.21332 0.99011 0.93352 0.97596 1.21083 0.95876 1.00089 0.98195 1.21361 0.96648 0.94472 0.97672 1.19870 0.97761 0.94145 1.02022 1.18255 0.82626 0.85997 0.79165 1.90730 1.72671 1.15845 1.61518 1.46041 1.28270 1.10584 1.52319 1.21461 0.85667 0.96812 0.94987 1.22453 0.97356 0.96184 0.97467 0.90653 1.23000 0.94753 1.00991 0.98644 1.21924 0.87345 0.92360 0.95627 1.44565 1.01868 1.73083 1.13537 1.19035 0.92838 1.32820 0.90526 0.90609 1.24789 0.95332 1.01742 0.98800 1.69787 0.99265 1.53483 1.34594 0.86150 0.77059 0.79000 0.83277 1.21140 1.21545 1.21233 1.21383 0.92794 0.95977 0.88345 0.93046 0.92822 0.93121 0.90284 0.92186 0.93117 0.93411 0.92185 0.88282 0.85628 0.85777 0.85503 0.85520 0.76569 0.91128 0.91560 0.91823 0.92125 0.87537 0.97051 0.93665 0.96471 0.95721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.90 37.16 0.33 -1.10 16 2 C -0.08 -0.89 2.32 -90.62 -0.21 -1.10 16 3 C -0.14 -1.46 9.19 37.16 0.34 -1.11 16 4 C -0.08 -0.87 4.09 -27.88 -0.11 -0.98 16 5 C -0.02 -0.18 4.47 -104.23 -0.47 -0.65 16 6 C -0.13 -1.15 8.68 -39.64 -0.34 -1.49 16 7 C -0.09 -0.76 10.04 -39.49 -0.40 -1.15 16 8 C -0.13 -1.14 10.03 -39.64 -0.40 -1.54 16 9 C -0.08 -0.82 9.53 -39.19 -0.37 -1.19 16 10 C -0.13 -1.58 5.87 -104.97 -0.62 -2.20 16 11 C 0.55 7.53 7.57 -12.33 -0.09 7.44 16 12 O -0.53 -8.29 11.62 5.32 0.06 -8.23 16 13 N -0.72 -9.34 5.38 -61.25 -0.33 -9.67 16 14 C 0.13 1.95 5.00 -4.04 -0.02 1.93 16 15 C -0.12 -1.89 2.98 -88.78 -0.26 -2.16 16 16 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 17 C -0.13 -2.48 6.54 -24.58 -0.16 -2.64 16 18 C 0.15 3.66 5.89 -2.53 -0.01 3.64 16 19 N -0.60 -15.39 3.40 -169.83 -0.58 -15.96 16 20 C -0.22 -6.24 10.28 -15.06 -0.15 -6.40 16 21 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 22 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 23 N -0.92 -26.86 10.09 55.49 0.56 -26.30 16 24 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 C 0.14 2.85 6.67 -2.90 -0.02 2.83 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.52 6.72 -51.93 -0.35 0.17 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 1.09 6.60 -51.93 -0.34 0.75 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.55 8.01 -51.93 -0.42 0.13 16 37 H 0.10 1.27 6.03 -51.93 -0.31 0.96 16 38 H 0.13 0.88 8.04 -52.49 -0.42 0.45 16 39 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 40 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.13 1.08 6.44 -52.49 -0.34 0.74 16 42 H 0.40 4.49 6.47 -40.82 -0.26 4.22 16 43 H 0.07 1.14 8.00 -51.93 -0.42 0.72 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.11 2.89 5.87 -51.93 -0.31 2.59 16 48 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 50 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.02 0.51 7.73 -51.93 -0.40 0.11 16 LS Contribution 396.52 15.07 5.98 5.98 Total: -1.00 -31.15 396.52 -11.01 -42.15 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -8.60 Total: 3.29 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -3.07 Total: -8.29 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.35 Total: -51.94 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.06 Total: -8.23 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.15 -11.01 -42.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029009174.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.964 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds