Wall clock time and date at job start Sat Apr 11 2020 02:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47308 * 2 1 4 4 C 1.52999 * 109.46875 * 120.00083 * 2 1 3 5 5 C 1.50699 * 109.47283 * 64.99606 * 4 2 1 6 6 C 1.37975 * 120.07515 * 258.00098 * 5 4 2 7 7 C 1.38336 * 120.14494 * 179.97438 * 6 5 4 8 8 C 1.38385 * 120.29369 * 0.02562 * 7 6 5 9 9 C 1.37936 * 120.14235 * 359.97438 * 8 7 6 10 10 C 1.39564 * 120.07049 * 77.73079 * 5 4 2 11 11 C 1.47843 * 120.14397 * 359.97438 * 10 5 4 12 12 O 1.21557 * 120.00154 * 5.28565 * 11 10 5 13 13 N 1.34779 * 119.99972 * 185.28667 * 11 10 5 14 14 C 1.46503 * 119.99987 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.46846 * 179.97438 * 14 13 11 16 16 H 1.09001 * 110.88646 * 51.12339 * 15 14 13 17 17 C 1.55158 * 111.00287 * 175.00048 * 15 14 13 18 18 C 1.54330 * 102.94233 * 153.57607 * 17 15 14 19 19 N 1.47022 * 107.27144 * 337.81188 * 18 17 15 20 20 C 1.36931 * 125.64805 * 178.91529 * 19 18 17 21 21 H 1.08009 * 120.00109 * 180.02562 * 20 19 18 22 22 C 1.38815 * 120.00182 * 0.02562 * 20 19 18 23 23 N 1.31617 * 119.99930 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00104 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47323 * 59.99720 * 24 22 20 26 26 H 1.48496 * 109.47255 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47086 * 299.99961 * 24 22 20 28 28 C 1.47426 * 108.70547 * 358.93884 * 19 18 17 29 29 H 1.08991 * 109.47257 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47044 * 300.00277 * 1 2 3 31 31 H 1.08998 * 109.46844 * 59.99562 * 1 2 3 32 32 H 1.09000 * 109.47044 * 239.99722 * 2 1 3 33 33 H 1.08999 * 109.47231 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46855 * 300.00089 * 3 2 1 35 35 H 1.09000 * 109.47295 * 59.99876 * 3 2 1 36 36 H 1.09005 * 109.47038 * 304.99357 * 4 2 1 37 37 H 1.08999 * 109.46973 * 185.00129 * 4 2 1 38 38 H 1.07995 * 119.92828 * 0.02562 * 6 5 4 39 39 H 1.07999 * 119.85359 * 180.02562 * 7 6 5 40 40 H 1.08002 * 119.92834 * 179.97438 * 8 7 6 41 41 H 1.08004 * 120.07539 * 180.02562 * 9 8 7 42 42 H 0.96997 * 119.99884 * 0.02562 * 13 11 10 43 43 H 1.08994 * 109.47275 * 300.00201 * 14 13 11 44 44 H 1.09006 * 109.46790 * 60.00266 * 14 13 11 45 45 H 1.08998 * 110.72242 * 271.93835 * 17 15 14 46 46 H 1.08997 * 110.71757 * 35.04178 * 17 15 14 47 47 H 1.09001 * 109.88014 * 97.22457 * 18 17 15 48 48 H 1.08992 * 109.88716 * 218.39068 * 18 17 15 49 49 H 0.96998 * 120.00438 * 179.97438 * 23 22 20 50 50 H 1.08996 * 110.36470 * 265.29519 * 28 19 18 51 51 H 1.08997 * 110.36779 * 142.96545 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6412 -2.1733 1.1889 6 6 0.5713 -2.6279 1.9321 7 6 0.2037 -3.9604 1.8774 8 6 0.9055 -4.8460 1.0786 9 6 1.9771 -4.4044 0.3306 10 6 2.3499 -3.0600 0.3769 11 6 3.4933 -2.5784 -0.4271 12 8 3.8786 -1.4315 -0.3098 13 7 4.1084 -3.4110 -1.2903 14 6 5.2410 -2.9336 -2.0874 15 6 5.7519 -4.0679 -2.9779 16 1 4.9343 -4.5188 -3.5403 17 6 6.8712 -3.5673 -3.9288 18 6 7.6897 -4.8467 -4.2028 19 7 7.4250 -5.7793 -3.0975 20 6 7.9452 -7.0401 -2.9752 21 1 7.6880 -7.6500 -2.1217 22 6 8.8033 -7.5343 -3.9480 23 7 9.1165 -6.7912 -4.9883 24 14 9.5136 -9.2538 -3.7808 25 1 8.4080 -10.2444 -3.7408 26 1 10.3943 -9.5407 -4.9415 27 1 10.3037 -9.3432 -2.5266 28 6 6.5062 -5.1327 -2.1430 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -0.2617 2.1370 37 1 3.1263 -0.6444 1.2952 38 1 0.0191 -1.9419 2.5572 39 1 -0.6348 -4.3112 2.4607 40 1 0.6137 -5.8852 1.0406 41 1 2.5239 -5.0964 -0.2928 42 1 3.8006 -4.3260 -1.3842 43 1 4.9207 -2.0984 -2.7101 44 1 6.0404 -2.6057 -1.4228 45 1 6.4458 -3.1764 -4.8530 46 1 7.4846 -2.8116 -3.4381 47 1 7.3761 -5.2922 -5.1469 48 1 8.7522 -4.6065 -4.2387 49 1 9.7163 -7.1363 -5.6679 50 1 7.0677 -4.6565 -1.3393 51 1 5.8057 -5.8624 -1.7370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029009175.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:43:53 Heat of formation + Delta-G solvation = -3.374745 kcal Electronic energy + Delta-G solvation = -28371.168255 eV Core-core repulsion = 24656.283238 eV Total energy + Delta-G solvation = -3714.885017 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.62798 -38.62565 -37.54097 -36.36166 -34.60605 -32.63513 -31.63609 -31.42183 -29.70149 -28.28132 -27.22857 -26.69465 -25.53290 -24.14044 -23.19176 -21.79030 -20.76640 -20.11168 -19.98515 -19.60959 -17.83351 -16.80453 -16.20937 -16.04647 -15.45864 -15.34556 -15.10459 -14.71535 -14.61331 -14.43706 -14.14809 -13.75586 -13.68509 -13.28354 -13.10680 -12.76736 -12.56677 -12.35527 -12.29847 -12.07231 -12.00553 -11.82569 -11.71689 -11.50848 -11.37796 -10.98471 -10.91465 -10.83787 -10.78936 -10.60707 -10.36303 -10.16127 -9.99029 -9.88090 -9.66354 -9.49995 -9.23153 -8.98845 -8.79491 -8.60661 -6.84211 -5.71947 -3.05592 0.69472 1.13303 2.83293 3.21755 3.39554 3.43837 3.45207 3.68793 4.48432 4.51418 4.57843 4.60715 4.77276 4.89589 4.95067 5.06239 5.12736 5.15361 5.21362 5.25880 5.42025 5.46545 5.52172 5.54400 5.64657 5.66873 5.68233 5.70492 5.77321 5.87842 5.88694 5.95494 6.03081 6.05797 6.06510 6.13430 6.20299 6.22769 6.30206 6.34467 6.46897 6.49070 6.52131 6.54032 6.67590 6.69208 6.90453 7.54587 7.55533 7.62632 7.81770 8.25190 8.25533 9.21366 9.81781 10.47938 11.39751 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017794 B = 0.002507 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.159966 B =11165.634757 C =12416.094242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 C -0.141 4.141 4 C -0.084 4.084 5 C -0.016 4.016 6 C -0.130 4.130 7 C -0.094 4.094 8 C -0.135 4.135 9 C -0.082 4.082 10 C -0.136 4.136 11 C 0.553 3.447 12 O -0.531 6.531 13 N -0.720 5.720 14 C 0.134 3.866 15 C -0.118 4.118 16 H 0.079 0.921 17 C -0.134 4.134 18 C 0.178 3.822 19 N -0.606 5.606 20 C -0.230 4.230 21 H 0.077 0.923 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.143 3.857 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.400 0.600 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.046 0.954 48 H 0.043 0.957 49 H 0.253 0.747 50 H 0.019 0.981 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.602 11.111 11.596 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.098 4.098 3 C -0.198 4.198 4 C -0.121 4.121 5 C -0.017 4.017 6 C -0.149 4.149 7 C -0.113 4.113 8 C -0.153 4.153 9 C -0.101 4.101 10 C -0.139 4.139 11 C 0.341 3.659 12 O -0.409 6.409 13 N -0.372 5.372 14 C 0.010 3.990 15 C -0.138 4.138 16 H 0.097 0.903 17 C -0.173 4.173 18 C 0.053 3.947 19 N -0.333 5.333 20 C -0.358 4.358 21 H 0.094 0.906 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.743 3.257 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.016 3.984 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.123 0.877 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.235 0.765 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.037 0.963 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -19.131 11.789 11.517 25.251 hybrid contribution 0.221 -1.598 -0.027 1.614 sum -18.910 10.191 11.490 24.361 Atomic orbital electron populations 1.21942 0.96090 1.01490 1.01231 1.20934 0.94419 0.96088 0.98355 1.21759 1.01664 0.95552 1.00870 1.20943 1.04064 0.89424 0.97699 1.20027 0.92944 0.95936 0.92827 1.21054 0.97348 0.95899 1.00549 1.21333 0.98957 0.93409 0.97553 1.21088 0.96280 1.00106 0.97778 1.21369 0.96377 0.94447 0.97926 1.19859 0.98345 0.94243 1.01423 1.18251 0.82485 0.85426 0.79727 1.90714 1.65942 1.17844 1.66424 1.46048 1.34037 1.15292 1.41785 1.21408 0.87547 0.96749 0.93249 1.22621 0.98306 0.95709 0.97164 0.90279 1.22854 0.96678 0.99955 0.97848 1.21145 0.96743 0.85364 0.91467 1.44472 1.53000 1.13666 1.22122 1.19005 1.21980 0.89212 1.05610 0.90560 1.24806 1.00064 0.98550 0.97037 1.69951 1.39183 1.36009 1.11823 0.86198 0.78724 0.83874 0.76951 1.21184 1.21585 1.21177 1.21577 0.91738 0.92806 0.92262 0.92835 0.93040 0.93085 0.90741 0.92121 0.93162 0.93290 0.92134 0.87720 0.85642 0.85780 0.85487 0.85486 0.76508 0.91563 0.91222 0.92006 0.92189 0.93562 0.93908 0.93689 0.96305 0.94732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.94 37.16 0.33 -1.00 16 2 C -0.08 -0.84 2.33 -90.62 -0.21 -1.05 16 3 C -0.14 -1.39 9.19 37.16 0.34 -1.04 16 4 C -0.08 -0.90 4.10 -27.88 -0.11 -1.02 16 5 C -0.02 -0.18 4.39 -104.22 -0.46 -0.63 16 6 C -0.13 -1.15 8.91 -39.64 -0.35 -1.50 16 7 C -0.09 -0.75 10.04 -39.49 -0.40 -1.15 16 8 C -0.13 -1.14 10.03 -39.64 -0.40 -1.54 16 9 C -0.08 -0.81 9.53 -39.19 -0.37 -1.19 16 10 C -0.14 -1.58 5.84 -104.97 -0.61 -2.19 16 11 C 0.55 7.44 7.27 -12.33 -0.09 7.35 16 12 O -0.53 -8.18 11.88 5.32 0.06 -8.12 16 13 N -0.72 -9.18 5.45 -61.25 -0.33 -9.52 16 14 C 0.13 1.90 5.13 -4.04 -0.02 1.88 16 15 C -0.12 -1.93 3.05 -88.47 -0.27 -2.20 16 16 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 17 C -0.13 -2.43 6.42 -24.89 -0.16 -2.59 16 18 C 0.18 4.27 5.37 -3.06 -0.02 4.25 16 19 N -0.61 -15.33 3.39 -170.07 -0.58 -15.91 16 20 C -0.23 -6.38 10.28 -15.06 -0.15 -6.54 16 21 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 23 N -0.92 -27.08 10.31 55.49 0.57 -26.50 16 24 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 C 0.14 2.84 6.65 -2.53 -0.02 2.82 16 29 H 0.05 0.49 6.85 -51.93 -0.36 0.13 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.96 6.50 -51.93 -0.34 0.62 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.55 7.98 -51.93 -0.41 0.13 16 37 H 0.10 1.35 5.95 -51.93 -0.31 1.04 16 38 H 0.13 0.87 8.02 -52.49 -0.42 0.44 16 39 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 40 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.13 1.08 6.44 -52.48 -0.34 0.74 16 42 H 0.40 4.46 6.54 -40.82 -0.27 4.20 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.07 7.96 -51.93 -0.41 0.65 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 47 H 0.05 1.23 7.38 -51.93 -0.38 0.84 16 48 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 49 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 50 H 0.02 0.39 7.90 -51.93 -0.41 -0.02 16 51 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 397.48 15.07 5.99 5.99 Total: -1.00 -31.37 397.48 -11.03 -42.40 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -8.65 Total: 2.32 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -3.07 Total: -7.67 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.34 Total: -51.93 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.06 Total: -8.12 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.37 -11.03 -42.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029009175.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.022 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds