Wall clock time and date at job start Sat Apr 11 2020 02:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47197 * 2 1 4 4 C 1.50699 * 109.47550 * 180.02562 * 3 2 1 5 5 C 1.37976 * 120.07469 * 100.32061 * 4 3 2 6 6 C 1.38342 * 120.14086 * 179.79919 * 5 4 3 7 7 C 1.38375 * 120.29514 * 0.46062 * 6 5 4 8 8 C 1.37946 * 120.14584 * 359.79339 * 7 6 5 9 9 C 1.39558 * 120.07035 * 280.60520 * 4 3 2 10 10 C 1.47841 * 120.14461 * 359.94707 * 9 4 3 11 11 O 1.21557 * 120.00550 * 5.25011 * 10 9 4 12 12 N 1.34777 * 120.00276 * 185.25026 * 10 9 4 13 13 C 1.46496 * 120.00695 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.36471 * 34.99349 * 13 12 10 15 15 C 1.50877 * 109.37313 * 154.74275 * 13 12 10 16 16 C 1.52721 * 109.27375 * 212.17862 * 15 13 12 17 17 C 1.47091 * 114.23113 * 274.82863 * 16 15 13 18 18 C 1.54862 * 110.32026 * 62.83015 * 17 16 15 19 19 N 1.44575 * 109.60826 * 288.73853 * 18 17 16 20 20 C 1.36936 * 118.64510 * 270.70455 * 19 18 17 21 21 H 1.08003 * 119.99701 * 29.67949 * 20 19 18 22 22 C 1.38809 * 120.00064 * 209.67849 * 20 19 18 23 23 N 1.31620 * 120.00041 * 12.20641 * 22 20 19 24 24 Si 1.86805 * 119.99959 * 192.21023 * 22 20 19 25 25 H 1.48500 * 109.47171 * 89.99798 * 24 22 20 26 26 H 1.48500 * 109.46781 * 209.99786 * 24 22 20 27 27 H 1.48504 * 109.47168 * 329.99774 * 24 22 20 28 28 C 1.47604 * 122.71286 * 90.71922 * 19 18 17 29 29 H 1.08999 * 109.47064 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46977 * 300.00191 * 1 2 3 31 31 H 1.09004 * 109.46683 * 60.00120 * 1 2 3 32 32 H 1.08998 * 109.46977 * 239.99809 * 2 1 3 33 33 H 1.09004 * 109.46683 * 119.99879 * 2 1 3 34 34 H 1.09000 * 109.46959 * 300.00017 * 3 2 1 35 35 H 1.08995 * 109.47380 * 59.99488 * 3 2 1 36 36 H 1.08001 * 119.92766 * 0.02562 * 5 4 3 37 37 H 1.08004 * 119.85278 * 180.23595 * 6 5 4 38 38 H 1.07995 * 119.93154 * 179.77302 * 7 6 5 39 39 H 1.07992 * 120.07153 * 179.97438 * 8 7 6 40 40 H 0.97006 * 119.99892 * 359.97438 * 12 10 9 41 41 H 1.09003 * 109.48561 * 332.04230 * 15 13 12 42 42 H 1.08995 * 109.48922 * 92.11315 * 15 13 12 43 43 H 1.08998 * 108.53955 * 153.62280 * 16 15 13 44 44 H 1.08998 * 108.59003 * 36.07484 * 16 15 13 45 45 H 1.09003 * 109.32600 * 302.57500 * 17 16 15 46 46 H 1.08999 * 109.19240 * 183.00627 * 17 16 15 47 47 H 1.09003 * 109.45073 * 168.69265 * 18 17 16 48 48 H 1.09005 * 109.44571 * 48.78102 * 18 17 16 49 49 H 0.96998 * 119.99929 * 179.97438 * 23 22 20 50 50 H 1.09001 * 108.95026 * 197.18749 * 28 19 18 51 51 H 1.09003 * 108.94409 * 78.55971 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4426 -0.0006 5 6 4.2380 1.6567 -1.1756 6 6 5.6214 1.6612 -1.1770 7 6 6.3214 1.4419 -0.0036 8 6 5.6428 1.2213 1.1769 9 6 4.2469 1.2202 1.1862 10 6 3.5130 0.9849 2.4478 11 8 2.3012 0.8899 2.4376 12 7 4.1875 0.8759 3.6096 13 6 3.4605 0.6423 4.8597 14 1 2.5994 0.0036 4.6631 15 6 4.3730 -0.0388 5.8496 16 6 3.5482 -0.9640 6.7418 17 6 2.9391 -0.2976 7.9031 18 6 1.9330 0.7832 7.4363 19 7 2.6512 1.9006 6.8656 20 6 3.0445 2.9192 7.6920 21 1 3.2681 2.7174 8.7291 22 6 3.1558 4.2111 7.1966 23 7 2.6605 4.5073 6.0137 24 14 4.0086 5.5293 8.2088 25 1 5.4570 5.5450 7.8816 26 1 3.4160 6.8545 7.8957 27 1 3.8307 5.2364 9.6538 28 6 2.9779 1.9888 5.4289 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.6976 1.8248 -2.0955 37 1 6.1575 1.8331 -2.0987 38 1 7.4013 1.4430 -0.0122 39 1 6.1902 1.0499 2.0919 40 1 5.1546 0.9514 3.6178 41 1 5.1202 -0.6234 5.3128 42 1 4.8704 0.7128 6.4625 43 1 4.1941 -1.7648 7.1018 44 1 2.7540 -1.4081 6.1418 45 1 3.7207 0.1713 8.5009 46 1 2.4174 -1.0387 8.5086 47 1 1.3468 1.1259 8.2891 48 1 1.2665 0.3585 6.6856 49 1 2.7379 5.4102 5.6677 50 1 3.7616 2.7334 5.2892 51 1 2.0894 2.3059 4.8828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034300069.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:41:26 Heat of formation + Delta-G solvation = -1.852048 kcal Electronic energy + Delta-G solvation = -29581.290689 eV Core-core repulsion = 25866.471702 eV Total energy + Delta-G solvation = -3714.818988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.32018 -38.59195 -37.36576 -35.19750 -34.08575 -33.47261 -31.58396 -31.02731 -30.71418 -29.52576 -26.45731 -25.97101 -24.32375 -23.84919 -22.82599 -22.04475 -20.86158 -20.35554 -19.75870 -19.17433 -17.52466 -16.61312 -15.98826 -15.70459 -15.34714 -15.17357 -14.94427 -14.47354 -14.19119 -14.02230 -13.89529 -13.72186 -13.38146 -13.14544 -13.03791 -12.71197 -12.44139 -12.37786 -12.05406 -12.00140 -11.81073 -11.53345 -11.29204 -11.11463 -10.98249 -10.94512 -10.79127 -10.70124 -10.47879 -10.34684 -10.21090 -10.08103 -9.92720 -9.76461 -9.48090 -9.19753 -9.00013 -8.74056 -8.47328 -8.32518 -6.57595 -5.73910 -3.23195 0.92609 1.31737 3.13300 3.36874 3.44182 3.45633 3.55318 3.95727 4.51157 4.72319 4.79077 4.81190 4.98058 5.22391 5.26437 5.33167 5.35821 5.37263 5.43731 5.48809 5.54806 5.65274 5.71605 5.74794 5.84651 5.93565 5.96856 6.02728 6.05167 6.10558 6.22855 6.26000 6.32147 6.35153 6.37635 6.40775 6.50534 6.55765 6.64481 6.67713 6.68886 6.74157 6.83094 6.87977 6.95593 7.02313 7.13079 7.42555 7.79462 7.85871 7.97595 8.51650 8.66018 9.27462 9.93321 10.40056 11.31898 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011273 B = 0.003789 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.206249 B = 7388.825973 C = 8040.724176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.086 4.086 4 C -0.020 4.020 5 C -0.131 4.131 6 C -0.098 4.098 7 C -0.136 4.136 8 C -0.085 4.085 9 C -0.127 4.127 10 C 0.551 3.449 11 O -0.523 6.523 12 N -0.713 5.713 13 C 0.121 3.879 14 H 0.074 0.926 15 C -0.116 4.116 16 C -0.098 4.098 17 C -0.148 4.148 18 C 0.155 3.845 19 N -0.586 5.586 20 C -0.261 4.261 21 H 0.064 0.936 22 C 0.008 3.992 23 N -0.900 5.900 24 Si 0.900 3.100 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.176 3.824 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.392 0.608 41 H 0.049 0.951 42 H 0.080 0.920 43 H 0.043 0.957 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.032 0.968 49 H 0.253 0.747 50 H 0.074 0.926 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.536 -9.721 -12.783 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.123 4.123 4 C -0.021 4.021 5 C -0.149 4.149 6 C -0.116 4.116 7 C -0.154 4.154 8 C -0.103 4.103 9 C -0.131 4.131 10 C 0.338 3.662 11 O -0.401 6.401 12 N -0.364 5.364 13 C 0.016 3.984 14 H 0.092 0.908 15 C -0.154 4.154 16 C -0.136 4.136 17 C -0.188 4.188 18 C 0.027 3.973 19 N -0.308 5.308 20 C -0.391 4.391 21 H 0.082 0.918 22 C -0.191 4.191 23 N -0.543 5.543 24 Si 0.730 3.270 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.050 3.950 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.227 0.773 41 H 0.068 0.932 42 H 0.099 0.901 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.050 0.950 49 H 0.063 0.937 50 H 0.092 0.908 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.612 -9.631 -12.858 16.714 hybrid contribution 1.203 0.902 0.448 1.569 sum 5.815 -8.729 -12.410 16.248 Atomic orbital electron populations 1.21702 0.95942 1.01020 1.01675 1.21362 0.95662 0.95737 1.01523 1.20835 0.89498 0.98488 1.03437 1.20084 0.96678 0.93835 0.91501 1.21046 0.94200 1.02098 0.97586 1.21281 0.94264 0.97932 0.98139 1.21038 0.99974 1.01814 0.92622 1.21323 0.93146 0.97435 0.98432 1.19969 0.93534 1.05479 0.94080 1.18177 0.87351 0.77278 0.83371 1.90732 1.13233 1.49570 1.86520 1.46102 1.10150 1.72990 1.07140 1.21782 0.94299 1.00555 0.81807 0.90768 1.21311 0.97728 0.98891 0.97437 1.20241 0.98582 0.97386 0.97366 1.21506 1.00953 0.99109 0.97228 1.20734 0.91886 0.88232 0.96456 1.43505 1.63295 1.19739 1.04253 1.19184 1.39932 0.86395 0.93582 0.91783 1.25144 0.99716 0.97112 0.97171 1.70060 1.46567 1.19223 1.18480 0.86338 0.79273 0.81527 0.79885 1.21537 1.21760 1.20406 1.21297 0.99630 0.90798 0.83253 0.93326 0.92080 0.93514 0.93582 0.90741 0.92324 0.87962 0.85687 0.85926 0.85733 0.85709 0.77347 0.93225 0.90107 0.93792 0.93233 0.92125 0.93490 0.93599 0.94971 0.93687 0.90816 0.94937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.11 -1.43 5.39 -26.73 -0.14 -1.57 16 3 C -0.09 -1.21 4.61 -27.88 -0.13 -1.34 16 4 C -0.02 -0.28 5.17 -104.23 -0.54 -0.81 16 5 C -0.13 -1.48 9.66 -39.64 -0.38 -1.86 16 6 C -0.10 -0.98 10.04 -39.49 -0.40 -1.37 16 7 C -0.14 -1.40 10.03 -39.64 -0.40 -1.80 16 8 C -0.08 -1.02 9.53 -39.18 -0.37 -1.39 16 9 C -0.13 -1.87 5.87 -104.97 -0.62 -2.49 16 10 C 0.55 9.57 7.53 -12.33 -0.09 9.48 16 11 O -0.52 -10.40 11.09 5.32 0.06 -10.35 16 12 N -0.71 -11.81 4.92 -55.31 -0.27 -12.09 16 13 C 0.12 2.28 2.27 -68.50 -0.16 2.13 16 14 H 0.07 1.50 6.74 -51.93 -0.35 1.15 16 15 C -0.12 -1.94 5.07 -27.94 -0.14 -2.08 16 16 C -0.10 -1.56 5.16 -29.71 -0.15 -1.72 16 17 C -0.15 -2.58 5.74 -28.59 -0.16 -2.74 16 18 C 0.15 3.26 5.65 -4.09 -0.02 3.24 16 19 N -0.59 -14.41 2.26 -172.09 -0.39 -14.80 16 20 C -0.26 -7.03 9.42 -15.06 -0.14 -7.17 16 21 H 0.06 1.70 7.86 -52.48 -0.41 1.29 16 22 C 0.01 0.21 4.94 -17.43 -0.09 0.13 16 23 N -0.90 -26.28 11.02 55.49 0.61 -25.67 16 24 Si 0.90 21.63 29.57 -169.99 -5.03 16.60 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 C 0.18 4.23 4.23 -2.94 -0.01 4.22 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 1.17 6.28 -51.93 -0.33 0.85 16 34 H 0.06 0.71 8.00 -51.93 -0.42 0.29 16 35 H 0.10 1.76 6.13 -51.93 -0.32 1.44 16 36 H 0.13 1.14 8.03 -52.49 -0.42 0.72 16 37 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.13 1.26 6.44 -52.49 -0.34 0.93 16 40 H 0.39 5.43 6.61 -40.82 -0.27 5.16 16 41 H 0.05 0.71 7.94 -51.93 -0.41 0.29 16 42 H 0.08 1.54 7.48 -51.93 -0.39 1.15 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.79 7.36 -51.93 -0.38 0.40 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.05 0.98 7.99 -51.93 -0.41 0.57 16 48 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 49 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 50 H 0.07 1.96 6.45 -51.93 -0.33 1.62 16 51 H 0.03 0.91 8.00 -51.93 -0.42 0.50 16 LS Contribution 391.20 15.07 5.90 5.90 Total: -1.00 -30.62 391.20 -11.26 -41.88 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -8.56 Total: 7.14 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -3.58 Total: -8.62 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.05 Total: -52.55 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.06 Total: -10.35 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.62 -11.26 -41.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034300069.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.030 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds