Wall clock time and date at job start Sat Apr 11 2020 02:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47157 * 2 1 4 4 C 1.50705 * 109.47196 * 180.02562 * 3 2 1 5 5 C 1.38356 * 119.85120 * 269.72207 * 4 3 2 6 6 C 1.37958 * 120.14680 * 179.76368 * 5 4 3 7 7 C 1.39581 * 119.84745 * 0.51168 * 6 5 4 8 8 C 1.47844 * 120.14041 * 179.76887 * 7 6 5 9 9 O 1.21561 * 120.00150 * 309.42572 * 8 7 6 10 10 N 1.34779 * 120.00301 * 129.43312 * 8 7 6 11 11 C 1.46934 * 120.62569 * 3.49896 * 10 8 7 12 12 C 1.52757 * 109.00749 * 233.58885 * 11 10 8 13 13 C 1.53041 * 109.38236 * 305.58941 * 12 11 10 14 14 H 1.09000 * 109.46629 * 301.22059 * 13 12 11 15 15 N 1.46509 * 109.46130 * 181.26282 * 13 12 11 16 16 C 1.36935 * 119.99960 * 84.92987 * 15 13 12 17 17 H 1.08000 * 119.99804 * 0.02562 * 16 15 13 18 18 C 1.38808 * 120.00057 * 180.02562 * 16 15 13 19 19 N 1.31617 * 119.99770 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00220 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47125 * 59.99751 * 20 18 16 22 22 H 1.48497 * 109.47134 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46991 * 300.00239 * 20 18 16 24 24 C 1.53038 * 109.53910 * 61.24382 * 13 12 11 25 25 H 1.08997 * 109.49761 * 58.58777 * 24 13 12 26 26 C 1.52997 * 109.49873 * 178.68343 * 24 13 12 27 27 C 1.46921 * 120.63407 * 183.78428 * 10 8 7 28 28 C 1.39574 * 119.71451 * 359.74521 * 7 6 5 29 29 C 1.37960 * 119.85036 * 359.97438 * 28 7 6 30 30 H 1.09004 * 109.47099 * 59.99620 * 1 2 3 31 31 H 1.08997 * 109.47541 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47485 * 300.00311 * 1 2 3 33 33 H 1.08997 * 109.47216 * 119.99998 * 2 1 3 34 34 H 1.08996 * 109.47023 * 240.00217 * 2 1 3 35 35 H 1.09004 * 109.47427 * 300.00180 * 3 2 1 36 36 H 1.08998 * 109.47435 * 59.99945 * 3 2 1 37 37 H 1.08004 * 119.92970 * 0.02562 * 5 4 3 38 38 H 1.08003 * 120.07605 * 180.25751 * 6 5 4 39 39 H 1.09000 * 109.58579 * 353.42683 * 11 10 8 40 40 H 1.08996 * 109.58302 * 113.84782 * 11 10 8 41 41 H 1.08995 * 109.56280 * 185.55661 * 12 11 10 42 42 H 1.08994 * 109.36234 * 65.49929 * 12 11 10 43 43 H 0.96999 * 119.99885 * 264.93787 * 15 13 12 44 44 H 0.97006 * 120.00095 * 180.02562 * 19 18 16 45 45 H 1.09005 * 109.47514 * 179.83550 * 26 24 13 46 46 H 1.08998 * 109.47440 * 299.83436 * 26 24 13 47 47 H 1.08996 * 109.47410 * 59.83750 * 26 24 13 48 48 H 1.08992 * 109.58971 * 246.15382 * 27 10 8 49 49 H 1.09001 * 109.58599 * 6.43648 * 27 10 8 50 50 H 1.07998 * 120.07717 * 180.02562 * 28 7 6 51 51 H 1.07998 * 119.92442 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2362 1.4482 1.1990 6 6 5.6157 1.4433 1.2056 7 6 6.3162 1.4434 -0.0017 8 6 7.7946 1.4434 -0.0022 9 8 8.4027 2.2564 0.6662 10 7 8.4683 0.5420 -0.7440 11 6 7.7493 -0.3969 -1.6161 12 6 8.1910 -1.8213 -1.2849 13 6 9.7155 -1.9155 -1.3807 14 1 10.0340 -1.6409 -2.3863 15 7 10.1388 -3.2883 -1.0929 16 6 10.1480 -4.2254 -2.0913 17 1 9.8436 -3.9525 -3.0909 18 6 10.5485 -5.5262 -1.8185 19 7 10.9189 -5.8589 -0.6001 20 14 10.5617 -6.8045 -3.1806 21 1 11.4798 -6.3658 -4.2622 22 1 11.0254 -8.1051 -2.6342 23 1 9.1899 -6.9588 -3.7279 24 6 10.3519 -0.9625 -0.3663 25 1 10.0145 -1.2213 0.6373 26 6 11.8755 -1.0815 -0.4399 27 6 9.9350 0.4754 -0.6912 28 6 5.6148 1.4431 -1.2085 29 6 4.2353 1.4422 -1.2009 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 3.6930 1.4521 2.1325 38 1 6.1526 1.4435 2.1428 39 1 6.6763 -0.3008 -1.4506 40 1 7.9814 -0.1783 -2.6583 41 1 7.7385 -2.5172 -1.9913 42 1 7.8739 -2.0719 -0.2727 43 1 10.4124 -3.5333 -0.1951 44 1 11.1992 -6.7678 -0.4096 45 1 12.3284 -0.4005 0.2807 46 1 12.1717 -2.1046 -0.2087 47 1 12.2119 -0.8240 -1.4442 48 1 10.3490 0.7665 -1.6565 49 1 10.3038 1.1487 0.0826 50 1 6.1509 1.4428 -2.1460 51 1 3.6914 1.4423 -2.1339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036161982.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:42:38 Heat of formation + Delta-G solvation = -16.776921 kcal Electronic energy + Delta-G solvation = -28422.711640 eV Core-core repulsion = 24707.245461 eV Total energy + Delta-G solvation = -3715.466179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.60436 -39.06336 -37.57317 -35.37877 -34.60558 -32.94503 -31.54619 -31.31503 -31.17285 -29.33430 -27.48132 -26.07671 -24.98672 -23.30430 -22.87626 -22.38010 -21.64536 -21.23955 -20.05116 -19.20622 -17.35133 -17.06490 -16.41444 -15.96656 -15.75484 -15.03014 -14.97116 -14.68251 -14.37988 -14.11197 -14.00767 -13.79432 -13.66532 -13.62827 -13.31427 -13.04110 -12.79435 -12.60485 -12.44227 -12.33202 -12.10109 -11.73367 -11.59839 -11.47308 -11.32603 -11.28114 -11.16055 -10.93907 -10.93040 -10.80271 -10.62710 -10.40614 -10.24013 -9.82922 -9.73093 -9.62620 -9.13478 -8.92803 -8.81072 -8.46773 -6.97404 -5.78493 -3.07191 0.84209 1.18773 2.69506 3.06609 3.41606 3.46398 3.47397 3.58200 4.36073 4.50709 4.53855 4.56737 4.73143 4.77824 4.80950 5.07053 5.09840 5.12141 5.19658 5.25074 5.26963 5.36521 5.42186 5.43268 5.49500 5.52342 5.60269 5.64573 5.69026 5.74823 5.77618 5.80135 5.85588 5.96167 5.97777 6.07717 6.10349 6.15500 6.21221 6.31708 6.35982 6.38891 6.43299 6.52917 6.63287 6.71101 6.80969 6.91925 7.05268 7.49129 7.66778 8.19539 8.39734 9.51036 10.08610 10.43610 11.43953 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011167 B = 0.002979 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.883358 B = 9397.557782 C =11276.600983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.083 4.083 4 C -0.066 4.066 5 C -0.122 4.122 6 C -0.067 4.067 7 C -0.123 4.123 8 C 0.558 3.442 9 O -0.545 6.545 10 N -0.598 5.598 11 C 0.097 3.903 12 C -0.152 4.152 13 C 0.184 3.816 14 H 0.048 0.952 15 N -0.720 5.720 16 C -0.238 4.238 17 H 0.069 0.931 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.286 1.286 24 C -0.110 4.110 25 H 0.069 0.931 26 C -0.136 4.136 27 C 0.120 3.880 28 C -0.086 4.086 29 C -0.123 4.123 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.043 0.957 46 H 0.074 0.926 47 H 0.051 0.949 48 H 0.067 0.933 49 H 0.088 0.912 50 H 0.130 0.870 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.519 16.067 0.295 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.120 4.120 4 C -0.066 4.066 5 C -0.140 4.140 6 C -0.086 4.086 7 C -0.126 4.126 8 C 0.347 3.653 9 O -0.423 6.423 10 N -0.329 5.329 11 C -0.026 4.026 12 C -0.193 4.193 13 C 0.074 3.926 14 H 0.066 0.934 15 N -0.360 5.360 16 C -0.369 4.369 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.736 3.264 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.130 4.130 25 H 0.087 0.913 26 C -0.194 4.194 27 C -0.002 4.002 28 C -0.105 4.105 29 C -0.141 4.141 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.093 0.907 47 H 0.070 0.930 48 H 0.085 0.915 49 H 0.107 0.893 50 H 0.148 0.852 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.162 16.360 0.480 23.002 hybrid contribution 0.075 -1.037 -0.493 1.151 sum -16.087 15.322 -0.013 22.216 Atomic orbital electron populations 1.21787 0.95637 1.01849 1.01752 1.21522 0.95699 0.95811 1.02782 1.20689 0.90578 0.97675 1.03037 1.20059 0.95855 0.97598 0.93131 1.20970 0.93667 1.01501 0.97822 1.21131 0.93979 0.96372 0.97141 1.19882 0.93065 1.05044 0.94634 1.18390 0.87066 0.80833 0.79054 1.90762 1.69699 1.38730 1.43119 1.48096 1.07517 1.33968 1.43334 1.22080 0.97022 0.90058 0.93391 1.22604 1.00815 0.93562 1.02288 1.20197 0.90484 0.86027 0.95929 0.93428 1.42400 1.78762 1.04225 1.10660 1.19163 1.37344 0.89784 0.90649 0.91313 1.24725 1.02207 0.97455 0.96465 1.69648 1.50950 1.18875 1.18588 0.86301 0.77659 0.81198 0.81211 1.21311 1.21755 1.21328 1.21743 0.96781 0.93793 1.00674 0.91256 1.21656 0.93908 1.02919 1.00871 1.21739 0.78346 0.97802 1.02360 1.21303 0.94361 0.97684 0.97120 1.20955 0.93690 1.01620 0.97814 0.92725 0.92555 0.92741 0.91660 0.91601 0.90865 0.90880 0.85550 0.85338 0.89555 0.91447 0.90552 0.92237 0.78221 0.93469 0.93806 0.90722 0.93032 0.91462 0.89339 0.85228 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 3 C -0.08 -0.56 5.34 -27.88 -0.15 -0.71 16 4 C -0.07 -0.60 5.14 -104.53 -0.54 -1.13 16 5 C -0.12 -1.19 9.68 -39.64 -0.38 -1.57 16 6 C -0.07 -0.81 9.74 -39.18 -0.38 -1.19 16 7 C -0.12 -1.60 5.00 -104.97 -0.52 -2.13 16 8 C 0.56 8.65 7.24 -12.33 -0.09 8.56 16 9 O -0.54 -10.07 16.47 5.31 0.09 -9.99 16 10 N -0.60 -8.75 2.98 -174.14 -0.52 -9.27 16 11 C 0.10 1.31 5.34 -3.93 -0.02 1.29 16 12 C -0.15 -2.56 5.64 -26.83 -0.15 -2.71 16 13 C 0.18 3.47 2.20 -67.89 -0.15 3.32 16 14 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 15 N -0.72 -17.22 4.41 -53.38 -0.24 -17.46 16 16 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 17 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 20 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 C -0.11 -1.83 2.46 -90.50 -0.22 -2.05 16 25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 26 C -0.14 -2.22 9.02 37.16 0.34 -1.88 16 27 C 0.12 1.79 5.71 -3.71 -0.02 1.76 16 28 C -0.09 -0.92 7.37 -39.19 -0.29 -1.21 16 29 C -0.12 -1.13 9.68 -39.64 -0.38 -1.51 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 36 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 37 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 39 H 0.09 1.05 4.56 -51.93 -0.24 0.81 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.38 9.94 7.50 -40.82 -0.31 9.63 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 1.43 7.36 -51.93 -0.38 1.04 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.09 1.37 7.02 -51.93 -0.36 1.00 16 50 H 0.13 1.23 7.07 -52.49 -0.37 0.86 16 51 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 404.38 15.07 6.09 6.09 Total: -1.00 -31.10 404.38 -10.68 -41.79 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -8.81 Total: 8.40 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -3.00 Total: -9.59 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.03 Total: -53.62 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.10 -10.68 -41.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036161982.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.008 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds