Wall clock time and date at job start Sat Apr 11 2020 02:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 C 1.38239 * 119.99743 * 269.72597 * 5 4 2 7 7 C 1.38236 * 119.99796 * 179.76891 * 6 5 4 8 8 C 1.38242 * 119.99871 * 0.48508 * 7 6 5 9 9 C 1.50705 * 120.00026 * 179.76896 * 8 7 6 10 10 C 1.50695 * 109.47014 * 270.02378 * 9 8 7 11 11 O 1.21283 * 120.00320 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00123 * 179.97438 * 10 9 8 13 13 C 1.46507 * 119.99751 * 0.02562 * 12 10 9 14 14 C 1.46502 * 120.00643 * 179.97438 * 12 10 9 15 15 C 1.53946 * 113.74233 * 218.74484 * 14 12 10 16 16 N 1.47817 * 86.03058 * 222.08021 * 15 14 12 17 17 C 1.36942 * 134.45279 * 204.64400 * 16 15 14 18 18 H 1.07995 * 120.00032 * 179.87418 * 17 16 15 19 19 C 1.38814 * 120.00285 * 359.86671 * 17 16 15 20 20 N 1.31621 * 119.99680 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00159 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47298 * 90.00290 * 21 19 17 23 23 H 1.48507 * 109.47064 * 210.00282 * 21 19 17 24 24 H 1.48504 * 109.47137 * 330.00108 * 21 19 17 25 25 C 1.47574 * 91.05308 * 24.55059 * 16 15 14 26 26 C 1.38230 * 119.99757 * 359.79237 * 8 7 6 27 27 C 1.38231 * 120.00640 * 359.95396 * 26 8 7 28 28 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 31 31 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 35 35 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 36 36 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 37 37 H 1.07997 * 120.00611 * 359.97438 * 6 5 4 38 38 H 1.08001 * 120.00122 * 180.25296 * 7 6 5 39 39 H 1.09002 * 109.46631 * 30.02350 * 9 8 7 40 40 H 1.08996 * 109.46819 * 150.02234 * 9 8 7 41 41 H 1.09001 * 109.47108 * 89.99882 * 13 12 10 42 42 H 1.08998 * 109.47097 * 209.99604 * 13 12 10 43 43 H 1.08994 * 109.47227 * 329.99714 * 13 12 10 44 44 H 1.09002 * 112.93697 * 350.33907 * 14 12 10 45 45 H 1.08992 * 113.77164 * 336.34750 * 15 14 12 46 46 H 1.08998 * 113.76509 * 107.74504 * 15 14 12 47 47 H 0.96996 * 120.00024 * 180.02562 * 20 19 17 48 48 H 1.08997 * 113.77060 * 221.14628 * 25 16 15 49 49 H 1.09002 * 113.76742 * 89.75396 * 25 16 15 50 50 H 1.08007 * 119.99539 * 179.97438 * 26 8 7 51 51 H 1.08000 * 120.00464 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 6 4.3291 0.1685 -1.7323 7 6 5.7068 0.0716 -1.6726 8 6 6.2973 -1.0281 -1.0783 9 6 7.7992 -1.1363 -1.0179 10 6 8.3016 -1.8466 -2.2483 11 8 7.5172 -2.2280 -3.0912 12 7 9.6225 -2.0582 -2.4123 13 6 10.5699 -1.5980 -1.3939 14 6 10.1109 -2.7492 -3.6082 15 6 11.2778 -3.7149 -3.3328 16 7 11.8779 -3.1804 -4.5735 17 6 12.7786 -3.6595 -5.4869 18 1 13.0606 -3.0544 -6.3358 19 6 13.3293 -4.9230 -5.3216 20 7 12.9854 -5.6606 -4.2872 21 14 14.5585 -5.5763 -6.5672 22 1 15.9328 -5.1951 -6.1533 23 1 14.4547 -7.0561 -6.6358 24 1 14.2652 -4.9971 -7.9028 25 6 11.1151 -1.9248 -4.4337 26 6 5.5100 -2.0287 -0.5400 27 6 4.1324 -1.9293 -0.5949 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6054 -1.7198 -1.2951 36 1 1.7517 -0.1583 -2.1369 37 1 3.8680 1.0254 -2.2006 38 1 6.3219 0.8531 -2.0936 39 1 8.2338 -0.1377 -0.9719 40 1 8.0875 -1.6992 -0.1302 41 1 10.7207 -2.3856 -0.6556 42 1 11.5218 -1.3558 -1.8663 43 1 10.1721 -0.7104 -0.9022 44 1 9.3093 -3.1875 -4.2027 45 1 11.8433 -3.4752 -2.4325 46 1 11.0010 -4.7673 -3.3953 47 1 13.3705 -6.5433 -4.1715 48 1 10.7089 -1.5506 -5.3734 49 1 11.6330 -1.1580 -3.8574 50 1 5.9713 -2.8880 -0.0760 51 1 3.5173 -2.7109 -0.1739 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043258521.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:41:02 Heat of formation + Delta-G solvation = 29.936720 kcal Electronic energy + Delta-G solvation = -27597.225637 eV Core-core repulsion = 23883.785114 eV Total energy + Delta-G solvation = -3713.440523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.18402 -39.32348 -37.63229 -36.45217 -34.42051 -32.86417 -31.93464 -30.96648 -29.20482 -27.62423 -27.45370 -26.60478 -25.47521 -24.81710 -23.07534 -22.76218 -21.31610 -20.20783 -19.67624 -18.42538 -17.09721 -16.66607 -16.39716 -16.00851 -15.65354 -15.29577 -15.07478 -14.81347 -14.58961 -14.55072 -13.85896 -13.70911 -13.46073 -13.44723 -13.10110 -12.68087 -12.52463 -12.47409 -12.36834 -12.20590 -12.10407 -11.87276 -11.78941 -11.61356 -11.49184 -11.29598 -11.15574 -11.02684 -10.90607 -10.87436 -10.79413 -10.69314 -10.24240 -10.07056 -9.57204 -9.48148 -8.88904 -8.81793 -8.49695 -8.11613 -6.92307 -5.79863 -3.12708 1.29148 1.42404 2.91059 3.28573 3.39038 3.43682 3.45574 3.77468 4.45267 4.48616 4.55030 4.66507 4.69886 4.78164 4.88164 4.98375 5.03799 5.10473 5.20029 5.27595 5.31050 5.35801 5.38076 5.43751 5.46125 5.48341 5.50340 5.53240 5.60455 5.61839 5.71514 5.77316 5.79153 5.87330 5.98461 6.00555 6.03989 6.08619 6.10801 6.18508 6.39187 6.43449 6.57896 6.58051 6.59893 6.80092 6.99550 7.18634 7.34460 7.50981 7.79421 7.94181 8.50504 9.01205 9.67314 10.54449 11.37389 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.032908 B = 0.001902 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.650035 B =14718.598471 C =14893.605201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.076 4.076 5 C -0.084 4.084 6 C -0.115 4.115 7 C -0.104 4.104 8 C -0.064 4.064 9 C -0.103 4.103 10 C 0.511 3.489 11 O -0.537 6.537 12 N -0.602 5.602 13 C 0.077 3.923 14 C 0.091 3.909 15 C 0.157 3.843 16 N -0.606 5.606 17 C -0.223 4.223 18 H 0.082 0.918 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.108 3.892 26 C -0.102 4.102 27 C -0.117 4.117 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.115 0.885 45 H 0.032 0.968 46 H 0.076 0.924 47 H 0.254 0.746 48 H 0.046 0.954 49 H 0.035 0.965 50 H 0.119 0.881 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.061 13.701 13.383 27.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.113 4.113 5 C -0.084 4.084 6 C -0.133 4.133 7 C -0.122 4.122 8 C -0.064 4.064 9 C -0.142 4.142 10 C 0.298 3.702 11 O -0.414 6.414 12 N -0.335 5.335 13 C -0.067 4.067 14 C -0.013 4.013 15 C 0.031 3.969 16 N -0.333 5.333 17 C -0.350 4.350 18 H 0.099 0.901 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.019 4.019 26 C -0.120 4.120 27 C -0.135 4.135 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.132 0.868 45 H 0.049 0.951 46 H 0.094 0.906 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.053 0.947 50 H 0.137 0.863 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.241 13.244 12.773 27.354 hybrid contribution 1.045 -0.384 -0.539 1.237 sum -19.196 12.860 12.234 26.145 Atomic orbital electron populations 1.21857 0.95207 1.01707 1.01740 1.21083 0.95308 0.96560 0.98012 1.21919 1.01793 0.95666 1.01385 1.20669 0.91258 1.01131 0.98253 1.19787 0.95331 0.94739 0.98524 1.20927 0.93384 0.98679 1.00297 1.20946 0.94796 0.97861 0.98571 1.19308 0.93771 0.94895 0.98464 1.20740 0.93068 1.02448 0.97984 1.20473 0.82188 0.79839 0.87682 1.90705 1.54928 1.51265 1.44478 1.48061 1.05700 1.57456 1.22277 1.21790 0.94402 0.99018 0.91459 1.24005 0.96640 0.95108 0.85500 1.22660 0.87436 0.97889 0.88931 1.45707 1.50147 1.12783 1.24669 1.18998 1.16050 0.98621 1.01370 0.90059 1.24806 1.00464 0.96859 0.98259 1.69816 1.46417 1.11069 1.29455 0.86084 0.80871 0.78111 0.80481 1.21579 1.21568 1.20545 1.22966 0.90959 0.91033 0.96937 1.20954 0.93633 0.97830 0.99591 1.20929 0.94567 0.97735 1.00261 0.92678 0.92702 0.92726 0.91140 0.93020 0.91994 0.92820 0.91109 0.91109 0.86385 0.86380 0.88236 0.88177 0.92456 0.90364 0.91646 0.86754 0.95055 0.90577 0.93556 0.93569 0.94734 0.86294 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.19 37.16 0.34 -0.52 16 2 C -0.09 -0.63 2.91 -90.62 -0.26 -0.90 16 3 C -0.15 -1.03 8.78 37.16 0.33 -0.70 16 4 C -0.08 -0.61 4.84 -27.89 -0.13 -0.74 16 5 C -0.08 -0.86 4.70 -104.62 -0.49 -1.35 16 6 C -0.11 -1.22 7.98 -39.58 -0.32 -1.53 16 7 C -0.10 -1.20 9.70 -39.58 -0.38 -1.59 16 8 C -0.06 -0.78 4.37 -104.62 -0.46 -1.24 16 9 C -0.10 -1.15 4.38 -29.03 -0.13 -1.28 16 10 C 0.51 8.14 7.67 -10.99 -0.08 8.06 16 11 O -0.54 -10.80 15.51 5.55 0.09 -10.72 16 12 N -0.60 -9.71 3.09 -175.76 -0.54 -10.25 16 13 C 0.08 0.94 8.83 59.85 0.53 1.47 16 14 C 0.09 1.84 4.40 -70.16 -0.31 1.53 16 15 C 0.16 3.70 6.97 -2.84 -0.02 3.68 16 16 N -0.61 -15.73 3.70 -177.92 -0.66 -16.38 16 17 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 18 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 20 N -0.92 -27.35 11.39 55.49 0.63 -26.72 16 21 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.11 2.28 8.46 -2.97 -0.03 2.25 16 26 C -0.10 -1.21 9.70 -39.59 -0.38 -1.60 16 27 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.48 6.28 -51.93 -0.33 0.15 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 37 H 0.12 1.04 8.05 -52.49 -0.42 0.62 16 38 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 39 H 0.10 0.88 7.35 -51.93 -0.38 0.50 16 40 H 0.10 0.93 8.05 -51.93 -0.42 0.51 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.05 6.35 -51.93 -0.33 0.72 16 43 H 0.06 0.58 6.44 -51.93 -0.33 0.24 16 44 H 0.11 2.56 7.22 -51.93 -0.37 2.18 16 45 H 0.03 0.72 6.83 -51.93 -0.35 0.37 16 46 H 0.08 2.03 7.16 -51.93 -0.37 1.65 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.04 0.68 6.84 -51.93 -0.36 0.32 16 50 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 51 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 405.56 15.07 6.11 6.11 Total: -1.00 -33.62 405.56 -10.54 -44.16 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -8.71 Total: -0.53 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -2.44 Total: -2.88 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.57 Total: -53.35 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.62 -10.54 -44.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043258521.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.100 kcal (2) G-P(sol) polarization free energy of solvation -33.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds