Wall clock time and date at job start Sat Apr 11 2020 02:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 C 1.38239 * 119.99743 * 269.72597 * 5 4 2 7 7 C 1.38236 * 119.99796 * 179.76891 * 6 5 4 8 8 C 1.38242 * 119.99871 * 0.48508 * 7 6 5 9 9 C 1.50705 * 120.00026 * 179.76896 * 8 7 6 10 10 C 1.50695 * 109.47014 * 270.02378 * 9 8 7 11 11 O 1.21283 * 120.00320 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00123 * 179.97438 * 10 9 8 13 13 C 1.46507 * 119.99751 * 0.02562 * 12 10 9 14 14 C 1.46502 * 120.00643 * 179.97438 * 12 10 9 15 15 C 1.53946 * 113.74233 * 218.74484 * 14 12 10 16 16 N 1.47817 * 86.03058 * 222.08021 * 15 14 12 17 17 C 1.36942 * 134.45279 * 204.64400 * 16 15 14 18 18 H 1.07995 * 120.00032 * 179.87418 * 17 16 15 19 19 C 1.38814 * 120.00285 * 359.86671 * 17 16 15 20 20 N 1.31621 * 119.99680 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00159 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47298 * 90.00290 * 21 19 17 23 23 H 1.48507 * 109.47064 * 210.00282 * 21 19 17 24 24 H 1.48504 * 109.47137 * 330.00108 * 21 19 17 25 25 C 1.47574 * 91.05308 * 24.55059 * 16 15 14 26 26 C 1.38230 * 119.99757 * 359.79237 * 8 7 6 27 27 C 1.38231 * 120.00640 * 359.95396 * 26 8 7 28 28 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 31 31 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 35 35 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 36 36 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 37 37 H 1.07997 * 120.00611 * 359.97438 * 6 5 4 38 38 H 1.08001 * 120.00122 * 180.25296 * 7 6 5 39 39 H 1.09002 * 109.46631 * 30.02350 * 9 8 7 40 40 H 1.08996 * 109.46819 * 150.02234 * 9 8 7 41 41 H 1.09001 * 109.47108 * 89.99882 * 13 12 10 42 42 H 1.08998 * 109.47097 * 209.99604 * 13 12 10 43 43 H 1.08994 * 109.47227 * 329.99714 * 13 12 10 44 44 H 1.09002 * 112.93697 * 350.33907 * 14 12 10 45 45 H 1.08992 * 113.77164 * 336.34750 * 15 14 12 46 46 H 1.08998 * 113.76509 * 107.74504 * 15 14 12 47 47 H 0.96996 * 120.00024 * 180.02562 * 20 19 17 48 48 H 1.08997 * 113.77060 * 221.14628 * 25 16 15 49 49 H 1.09002 * 113.76742 * 89.75396 * 25 16 15 50 50 H 1.08007 * 119.99539 * 179.97438 * 26 8 7 51 51 H 1.08000 * 120.00464 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 6 4.3291 0.1685 -1.7323 7 6 5.7068 0.0716 -1.6726 8 6 6.2973 -1.0281 -1.0783 9 6 7.7992 -1.1363 -1.0179 10 6 8.3016 -1.8466 -2.2483 11 8 7.5172 -2.2280 -3.0912 12 7 9.6225 -2.0582 -2.4123 13 6 10.5699 -1.5980 -1.3939 14 6 10.1109 -2.7492 -3.6082 15 6 11.2778 -3.7149 -3.3328 16 7 11.8779 -3.1804 -4.5735 17 6 12.7786 -3.6595 -5.4869 18 1 13.0606 -3.0544 -6.3358 19 6 13.3293 -4.9230 -5.3216 20 7 12.9854 -5.6606 -4.2872 21 14 14.5585 -5.5763 -6.5672 22 1 15.9328 -5.1951 -6.1533 23 1 14.4547 -7.0561 -6.6358 24 1 14.2652 -4.9971 -7.9028 25 6 11.1151 -1.9248 -4.4337 26 6 5.5100 -2.0287 -0.5400 27 6 4.1324 -1.9293 -0.5949 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6054 -1.7198 -1.2951 36 1 1.7517 -0.1583 -2.1369 37 1 3.8680 1.0254 -2.2006 38 1 6.3219 0.8531 -2.0936 39 1 8.2338 -0.1377 -0.9719 40 1 8.0875 -1.6992 -0.1302 41 1 10.7207 -2.3856 -0.6556 42 1 11.5218 -1.3558 -1.8663 43 1 10.1721 -0.7104 -0.9022 44 1 9.3093 -3.1875 -4.2027 45 1 11.8433 -3.4752 -2.4325 46 1 11.0010 -4.7673 -3.3953 47 1 13.3705 -6.5433 -4.1715 48 1 10.7089 -1.5506 -5.3734 49 1 11.6330 -1.1580 -3.8574 50 1 5.9713 -2.8880 -0.0760 51 1 3.5173 -2.7109 -0.1739 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043258521.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:41:01 Heat of formation + Delta-G solvation = 12.132910 kcal Electronic energy + Delta-G solvation = -27597.997668 eV Core-core repulsion = 23883.785114 eV Total energy + Delta-G solvation = -3714.212555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.37336 -40.37556 -39.16738 -37.14641 -35.88252 -34.13802 -33.51903 -31.77907 -30.27612 -29.24993 -27.95990 -27.81598 -26.63866 -26.41911 -24.75929 -23.58280 -22.30791 -21.15724 -20.76369 -19.85793 -18.86622 -18.17732 -17.40467 -17.09607 -16.78396 -16.73725 -16.20303 -15.95922 -15.72928 -15.38274 -15.14167 -14.86287 -14.65213 -14.29776 -14.22100 -13.85748 -13.69924 -13.39876 -13.28517 -13.21385 -13.17349 -13.07500 -12.94256 -12.89199 -12.80706 -12.59171 -12.55422 -12.29731 -12.06252 -11.97537 -11.80822 -11.67507 -11.55865 -11.47645 -11.45986 -10.89170 -10.81182 -9.72220 -9.52327 -9.33612 -8.97748 -7.94566 -5.28964 0.44929 0.58852 1.44592 1.47080 1.55791 1.67838 2.04237 2.47620 2.90077 3.24798 3.40180 3.70365 3.78728 3.87737 3.90764 3.97259 4.08114 4.12345 4.21028 4.28152 4.33390 4.39647 4.43722 4.48507 4.60200 4.66170 4.68933 4.70605 4.77094 4.80706 4.84544 4.86179 4.90078 4.98823 5.00895 5.09151 5.10212 5.17857 5.19796 5.24549 5.25816 5.36474 5.44668 5.46788 5.50377 5.57868 5.71210 5.74423 5.79779 5.87487 6.19117 6.53036 6.87043 7.24800 7.55374 8.49075 9.22532 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.032908 B = 0.001902 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.650035 B =14718.598471 C =14893.605201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.149 4.149 4 C -0.074 4.074 5 C -0.086 4.086 6 C -0.122 4.122 7 C -0.117 4.117 8 C -0.084 4.084 9 C -0.090 4.090 10 C 0.508 3.492 11 O -0.586 6.586 12 N -0.602 5.602 13 C 0.071 3.929 14 C 0.115 3.885 15 C 0.162 3.838 16 N -0.638 5.638 17 C -0.237 4.237 18 H 0.086 0.914 19 C -0.066 4.066 20 N -0.953 5.953 21 Si 0.983 3.017 22 H -0.282 1.282 23 H -0.294 1.294 24 H -0.269 1.269 25 C 0.116 3.884 26 C -0.119 4.119 27 C -0.129 4.129 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.110 0.890 44 H 0.087 0.913 45 H 0.040 0.960 46 H 0.036 0.964 47 H 0.250 0.750 48 H 0.048 0.952 49 H 0.062 0.938 50 H 0.123 0.877 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.533 15.638 14.311 29.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 C -0.206 4.206 4 C -0.111 4.111 5 C -0.086 4.086 6 C -0.140 4.140 7 C -0.135 4.135 8 C -0.084 4.084 9 C -0.129 4.129 10 C 0.298 3.702 11 O -0.466 6.466 12 N -0.334 5.334 13 C -0.071 4.071 14 C 0.010 3.990 15 C 0.035 3.965 16 N -0.365 5.365 17 C -0.365 4.365 18 H 0.104 0.896 19 C -0.259 4.259 20 N -0.602 5.602 21 Si 0.810 3.190 22 H -0.209 1.209 23 H -0.221 1.221 24 H -0.194 1.194 25 C -0.010 4.010 26 C -0.137 4.137 27 C -0.147 4.147 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.143 0.857 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.128 0.872 44 H 0.105 0.895 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.080 0.920 50 H 0.141 0.859 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.718 15.233 13.733 29.153 hybrid contribution 1.099 -0.940 -0.799 1.652 sum -19.619 14.293 12.933 27.504 Atomic orbital electron populations 1.21835 0.94229 1.02040 1.02182 1.21048 0.96060 0.96394 0.97133 1.21903 1.01111 0.95684 1.01926 1.20698 0.89818 1.01600 0.98994 1.20072 0.96556 0.94318 0.97688 1.21179 0.93336 0.99285 1.00216 1.21200 0.95482 0.98184 0.98592 1.19495 0.94385 0.95316 0.99200 1.20760 0.92528 1.03711 0.95907 1.21329 0.81324 0.79013 0.88490 1.90686 1.56063 1.53257 1.46550 1.48046 1.06783 1.56958 1.21646 1.22067 0.93354 1.01120 0.90537 1.23213 0.94767 0.94170 0.86866 1.22518 0.88888 0.96370 0.88679 1.46028 1.50275 1.15077 1.25089 1.19396 1.16088 0.98981 1.02042 0.89644 1.25676 1.02653 0.97226 1.00346 1.70006 1.47716 1.11124 1.31307 0.85019 0.78521 0.76866 0.78551 1.20889 1.22066 1.19369 1.23064 0.90339 0.90156 0.97474 1.21181 0.94292 0.98137 1.00084 1.21186 0.94603 0.98434 1.00475 0.92364 0.92460 0.92161 0.91687 0.92426 0.92996 0.92358 0.90802 0.90695 0.84907 0.85348 0.85048 0.85681 0.91596 0.91377 0.87162 0.89520 0.94217 0.94564 0.94118 0.93415 0.92014 0.85852 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.19 71.98 0.66 -0.79 16 2 C -0.09 -1.09 2.91 -10.79 -0.03 -1.12 16 3 C -0.15 -1.81 8.78 71.98 0.63 -1.18 16 4 C -0.07 -1.09 4.84 29.85 0.14 -0.94 16 5 C -0.09 -1.68 4.70 -19.87 -0.09 -1.78 16 6 C -0.12 -2.45 7.98 22.27 0.18 -2.27 16 7 C -0.12 -2.55 9.70 22.27 0.22 -2.33 16 8 C -0.08 -1.92 4.37 -19.86 -0.09 -2.01 16 9 C -0.09 -1.77 4.38 29.10 0.13 -1.64 16 10 C 0.51 15.56 7.67 87.66 0.67 16.23 16 11 O -0.59 -23.73 15.51 -3.04 -0.05 -23.78 16 12 N -0.60 -18.60 3.09 -828.36 -2.56 -21.16 16 13 C 0.07 1.54 8.83 127.77 1.13 2.67 16 14 C 0.12 4.70 4.40 46.75 0.21 4.91 16 15 C 0.16 7.81 6.97 86.44 0.60 8.41 16 16 N -0.64 -33.47 3.70 -716.81 -2.65 -36.13 16 17 C -0.24 -13.53 10.70 84.03 0.90 -12.63 16 18 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 19 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 20 N -0.95 -58.09 11.39 21.65 0.25 -57.84 16 21 Si 0.98 46.14 29.55 68.60 2.03 48.17 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 C 0.12 4.80 8.46 86.49 0.73 5.54 16 26 C -0.12 -2.73 9.70 22.27 0.22 -2.52 16 27 C -0.13 -2.71 9.70 22.27 0.22 -2.49 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.05 0.74 6.28 -2.39 -0.01 0.72 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 36 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 37 H 0.13 2.15 8.05 -2.91 -0.02 2.13 16 38 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.13 1.76 7.35 -2.39 -0.02 1.74 16 40 H 0.13 1.87 8.05 -2.39 -0.02 1.85 16 41 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.65 6.35 -2.39 -0.02 1.64 16 43 H 0.11 1.43 6.44 -2.39 -0.02 1.41 16 44 H 0.09 4.04 7.22 -2.39 -0.02 4.03 16 45 H 0.04 1.84 6.83 -2.39 -0.02 1.83 16 46 H 0.04 2.02 7.16 -2.39 -0.02 2.00 16 47 H 0.25 14.76 8.31 -92.71 -0.77 13.98 16 48 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.06 2.28 6.84 -2.39 -0.02 2.26 16 50 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 51 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -75.07 405.56 4.79 -70.28 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.89 Total: 17.75 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 6.89 Total: 2.70 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -4.97 Total: -115.13 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.05 Total: -23.78 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -75.07 4.79 -70.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043258521.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.415 kcal (2) G-P(sol) polarization free energy of solvation -75.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds